Wall clock time and date at job start Mon Mar 30 2020 02:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21573 * 119.99990 * 2 1 4 4 C 1.40392 * 119.99718 * 180.27692 * 2 1 3 5 5 C 1.38575 * 125.95165 * 179.72566 * 4 2 1 6 6 C 1.39345 * 106.76882 * 179.97438 * 5 4 2 7 7 C 1.37732 * 107.09457 * 0.02562 * 6 5 4 8 8 N 1.37748 * 125.66082 * 179.97438 * 7 6 5 9 9 C 1.46495 * 119.99896 * 0.02562 * 8 7 6 10 10 C 1.46504 * 119.99705 * 179.97438 * 8 7 6 11 11 C 1.50706 * 109.46865 * 90.00211 * 10 8 7 12 12 H 1.07998 * 120.00237 * 359.97438 * 11 10 8 13 13 C 1.37874 * 119.99771 * 179.97438 * 11 10 8 14 14 N 1.31512 * 120.00174 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00076 * 359.97438 * 13 11 10 16 16 H 1.48505 * 109.47229 * 90.00031 * 15 13 11 17 17 H 1.48500 * 109.47186 * 209.99894 * 15 13 11 18 18 H 1.48504 * 109.47104 * 330.00177 * 15 13 11 19 19 O 1.34080 * 108.67232 * 359.73177 * 7 6 5 20 20 H 1.09004 * 109.46983 * 0.02562 * 1 2 3 21 21 H 1.08994 * 109.46850 * 119.99880 * 1 2 3 22 22 H 1.08998 * 109.47115 * 239.99804 * 1 2 3 23 23 H 1.08000 * 126.61520 * 359.96526 * 5 4 2 24 24 H 1.08006 * 126.45187 * 180.02562 * 6 5 4 25 25 H 1.08993 * 109.47625 * 90.00160 * 9 8 7 26 26 H 1.09002 * 109.46810 * 209.99774 * 9 8 7 27 27 H 1.08998 * 109.47602 * 329.99193 * 9 8 7 28 28 H 1.08998 * 109.46617 * 209.99928 * 10 8 7 29 29 H 1.08996 * 109.47138 * 330.00013 * 10 8 7 30 30 H 0.96993 * 120.00164 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1149 1.0529 0.0000 4 6 2.2089 -1.2158 -0.0059 5 6 3.5872 -1.3596 -0.0119 6 6 3.8486 -2.7283 -0.0158 7 6 2.6315 -3.3730 -0.0125 8 7 2.4457 -4.7379 -0.0152 9 6 3.6040 -5.6347 -0.0214 10 6 1.0897 -5.2925 -0.0106 11 6 0.6186 -5.4791 -1.4299 12 1 1.2644 -5.2110 -2.2530 13 6 -0.6369 -5.9922 -1.6776 14 7 -1.0480 -6.1555 -2.9161 15 14 -1.7537 -6.4566 -0.2541 16 1 -2.5804 -5.2841 0.1296 17 1 -2.6408 -7.5744 -0.6651 18 1 -0.9278 -6.8805 0.9051 19 8 1.6577 -2.4514 -0.0010 20 1 -0.3633 1.0277 -0.0005 21 1 -0.3633 -0.5138 -0.8900 22 1 -0.3633 -0.5139 0.8899 23 1 4.3178 -0.5642 -0.0136 24 1 4.8223 -3.1956 -0.0204 25 1 3.8950 -5.8597 1.0046 26 1 3.3446 -6.5596 -0.5366 27 1 4.4344 -5.1524 -0.5371 28 1 1.0927 -6.2551 0.5008 29 1 0.4188 -4.6077 0.5079 30 1 -1.9311 -6.5168 -3.0904 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131531488.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:53 Heat of formation + Delta-G solvation = -34.809790 kcal Electronic energy + Delta-G solvation = -15040.609448 eV Core-core repulsion = 12416.320638 eV Total energy + Delta-G solvation = -2624.288810 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.42650 -40.02089 -38.06291 -34.86561 -33.91124 -31.94471 -30.65803 -29.26361 -27.02019 -24.75283 -22.61685 -22.06451 -20.67330 -19.18608 -18.64059 -17.43751 -17.27988 -16.61610 -16.04353 -15.72841 -15.52302 -14.69862 -14.65839 -14.24357 -14.07247 -13.82961 -13.60544 -13.25313 -13.07956 -13.05017 -12.57905 -12.46655 -12.11780 -11.78804 -11.08518 -10.93556 -10.86547 -10.61122 -8.37158 -8.18760 -6.45182 -0.12878 1.30112 1.36543 1.37033 1.46428 1.53320 2.04876 2.28881 2.66430 2.97321 3.41990 3.90813 4.20845 4.25808 4.45431 4.58652 4.59221 4.66247 4.70430 4.74223 4.81333 4.83716 4.97343 5.15724 5.36266 5.38853 5.62336 6.03997 6.32609 6.38942 6.59198 6.67928 7.20089 8.79837 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.026365 B = 0.009012 C = 0.007366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.740558 B = 3106.371224 C = 3800.390832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.435 3.565 3 O -0.509 6.509 4 C -0.226 4.226 5 C -0.041 4.041 6 C -0.323 4.323 7 C 0.341 3.659 8 N -0.573 5.573 9 C 0.099 3.901 10 C 0.222 3.778 11 C -0.548 4.548 12 H 0.029 0.971 13 C 0.016 3.984 14 N -0.942 5.942 15 Si 0.945 3.055 16 H -0.269 1.269 17 H -0.280 1.280 18 H -0.235 1.235 19 O -0.192 6.192 20 H 0.097 0.903 21 H 0.088 0.912 22 H 0.099 0.901 23 H 0.175 0.825 24 H 0.181 0.819 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.060 0.940 29 H 0.028 0.972 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.559 3.207 9.359 11.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.323 3.677 3 O -0.393 6.393 4 C -0.275 4.275 5 C -0.061 4.061 6 C -0.348 4.348 7 C 0.178 3.822 8 N -0.288 5.288 9 C -0.041 4.041 10 C 0.100 3.900 11 C -0.587 4.587 12 H 0.048 0.952 13 C -0.183 4.183 14 N -0.581 5.581 15 Si 0.768 3.232 16 H -0.194 1.194 17 H -0.205 1.205 18 H -0.158 1.158 19 O -0.086 6.086 20 H 0.116 0.884 21 H 0.106 0.894 22 H 0.118 0.882 23 H 0.192 0.808 24 H 0.198 0.802 25 H 0.102 0.898 26 H 0.096 0.904 27 H 0.104 0.896 28 H 0.078 0.922 29 H 0.046 0.954 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.340 3.472 9.260 11.747 hybrid contribution -0.791 -0.441 -0.245 0.938 sum 5.549 3.031 9.014 11.011 Atomic orbital electron populations 1.22179 0.92208 1.05400 1.05047 1.19584 0.92558 0.84624 0.70965 1.90592 1.72984 1.32558 1.43215 1.21273 0.93895 0.83813 1.28487 1.22412 0.94073 0.97287 0.92361 1.21393 0.96798 0.92750 1.23877 1.19992 0.86781 0.83239 0.92200 1.46160 1.09222 0.98855 1.74586 1.21973 0.85853 0.92967 1.03317 1.19612 0.79455 0.95366 0.95593 1.21578 1.01231 1.43550 0.92332 0.95246 1.25850 0.99257 0.94585 0.98593 1.70047 1.20388 1.46038 1.21621 0.85752 0.79118 0.78618 0.79752 1.19364 1.20529 1.15843 1.84036 1.35327 1.14961 1.74316 0.88436 0.89356 0.88231 0.80782 0.80151 0.89845 0.90427 0.89649 0.92184 0.95378 0.92126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.44 10.02 71.24 0.71 -4.73 16 2 C 0.44 15.10 7.02 26.21 0.18 15.28 16 3 O -0.51 -19.24 17.51 -3.95 -0.07 -19.31 16 4 C -0.23 -8.31 6.86 22.87 0.16 -8.15 16 5 C -0.04 -1.32 10.56 22.62 0.24 -1.08 16 6 C -0.32 -10.01 9.96 22.42 0.22 -9.78 16 7 C 0.34 12.83 7.62 83.64 0.64 13.47 16 8 N -0.57 -21.30 2.94 -845.17 -2.48 -23.78 16 9 C 0.10 2.62 10.41 127.77 1.33 3.95 16 10 C 0.22 9.61 4.39 85.63 0.38 9.98 16 11 C -0.55 -29.84 9.94 25.60 0.25 -29.59 16 12 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 13 C 0.02 0.89 5.47 84.65 0.46 1.35 16 14 N -0.94 -56.64 13.96 21.45 0.30 -56.34 16 15 Si 0.95 40.54 27.47 68.60 1.88 42.43 16 16 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 17 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 18 H -0.24 -8.90 6.54 99.48 0.65 -8.25 16 19 O -0.19 -7.87 9.88 -10.48 -0.10 -7.97 16 20 H 0.10 2.36 8.12 -2.38 -0.02 2.34 16 21 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 22 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 23 H 0.17 4.67 8.06 -2.91 -0.02 4.65 16 24 H 0.18 4.25 7.21 -2.91 -0.02 4.23 16 25 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.08 2.14 8.07 -2.39 -0.02 2.12 16 27 H 0.08 1.92 6.79 -2.39 -0.02 1.90 16 28 H 0.06 2.37 7.13 -2.39 -0.02 2.35 16 29 H 0.03 1.24 7.13 -2.39 -0.02 1.22 16 30 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -67.68 268.04 5.18 -62.49 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 1.08 Total: 11.78 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: 4.58 Total: -9.30 kcal Atomic # 7 Polarization: -77.94 SS G_CDS: -2.18 Total: -80.12 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -0.17 Total: -27.28 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 1.88 Total: 42.43 kcal Total: -67.68 5.18 -62.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131531488.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.685 kcal (2) G-P(sol) polarization free energy of solvation -67.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds