Wall clock time and date at job start Mon Mar 30 2020 03:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99682 * 2 1 4 4 H 1.48504 * 109.46795 * 240.00188 * 3 2 1 5 5 H 1.48495 * 109.47168 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47040 * 120.00378 * 3 2 1 7 7 C 1.37877 * 119.99917 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99509 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00335 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47499 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47327 * 179.97438 * 10 9 7 12 12 N 1.46507 * 109.46793 * 179.97438 * 11 10 9 13 13 N 1.39965 * 119.88795 * 269.99980 * 12 11 10 14 14 C 1.31078 * 120.72640 * 179.72501 * 13 12 11 15 15 N 1.39423 * 119.76755 * 179.97438 * 14 13 12 16 16 C 1.40891 * 120.46896 * 0.02562 * 14 13 12 17 17 C 1.35962 * 119.72154 * 0.02562 * 16 14 13 18 18 C 1.34817 * 119.88478 * 89.72793 * 12 11 10 19 19 O 1.22103 * 120.22568 * 0.25556 * 18 12 11 20 20 H 0.96998 * 119.99988 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.46992 * 59.99855 * 9 7 2 22 22 H 1.09008 * 109.46921 * 300.00409 * 9 7 2 23 23 H 1.09006 * 109.47265 * 59.99306 * 10 9 7 24 24 H 1.09000 * 109.47028 * 300.00239 * 10 9 7 25 25 H 1.09000 * 109.47226 * 60.00431 * 11 10 9 26 26 H 1.08996 * 109.47105 * 299.99482 * 11 10 9 27 27 H 0.96993 * 119.99671 * 359.97438 * 15 14 13 28 28 H 0.97003 * 119.99904 * 180.02562 * 15 14 13 29 29 H 1.07993 * 120.14209 * 179.97438 * 16 14 13 30 30 H 1.08007 * 120.34268 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9871 0.0001 12 7 2.4325 -6.1006 -0.0005 13 7 2.8849 -6.6307 -1.2143 14 6 3.7407 -7.6233 -1.2340 15 7 4.1776 -8.1364 -2.4546 16 6 4.2215 -8.1762 -0.0306 17 6 3.7936 -7.6762 1.1592 18 6 2.8741 -6.6074 1.1681 19 8 2.4797 -6.1447 2.2270 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6248 -2.5570 0.8897 23 1 2.8721 -3.6043 0.8894 24 1 2.8720 -3.6043 -0.8905 25 1 0.8534 -5.0451 -0.8897 26 1 0.8541 -5.0446 0.8903 27 1 3.8480 -7.7591 -3.2851 28 1 4.8106 -8.8712 -2.4731 29 1 4.9262 -8.9942 -0.0530 30 1 4.1559 -8.0921 2.0878 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161161973.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:41 Heat of formation + Delta-G solvation = -4.604429 kcal Electronic energy + Delta-G solvation = -14611.156672 eV Core-core repulsion = 12020.470416 eV Total energy + Delta-G solvation = -2590.686256 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.87258 -38.72621 -37.01856 -35.49865 -34.27276 -33.15947 -31.01255 -28.65363 -26.20940 -24.64760 -23.60478 -22.17398 -19.52861 -18.94988 -18.26836 -17.60095 -16.86043 -16.68086 -16.49133 -16.06685 -15.68728 -14.53370 -14.43745 -14.34695 -14.29166 -14.01659 -13.28678 -12.93426 -12.68319 -12.56119 -12.19572 -11.72639 -11.66059 -11.44819 -11.05372 -10.71141 -10.65818 -10.57537 -8.92395 -8.21931 -6.33952 -0.43850 1.03773 1.13776 1.38146 1.42238 1.50346 2.39619 2.47988 2.65265 3.10527 3.39827 3.76875 3.96156 4.13378 4.19465 4.44727 4.61042 4.66138 4.78975 4.90664 5.06888 5.10198 5.22779 5.44367 5.64706 5.78563 6.20290 6.29334 6.54861 6.79806 6.86680 7.31878 7.34684 8.89799 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.041790 B = 0.005558 C = 0.005304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.849667 B = 5036.374887 C = 5277.704343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.549 4.549 8 H 0.054 0.946 9 C 0.030 3.970 10 C -0.098 4.098 11 C 0.139 3.861 12 N -0.398 5.398 13 N -0.345 5.345 14 C 0.353 3.647 15 N -0.815 5.815 16 C -0.075 4.075 17 C -0.158 4.158 18 C 0.465 3.535 19 O -0.600 6.600 20 H 0.266 0.734 21 H 0.005 0.995 22 H -0.007 1.007 23 H 0.034 0.966 24 H 0.054 0.946 25 H 0.097 0.903 26 H 0.080 0.920 27 H 0.413 0.587 28 H 0.431 0.569 29 H 0.206 0.794 30 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.184 -20.522 -5.332 23.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.587 4.587 8 H 0.073 0.927 9 C -0.007 4.007 10 C -0.136 4.136 11 C 0.018 3.982 12 N -0.215 5.215 13 N -0.175 5.175 14 C 0.083 3.917 15 N -0.371 5.371 16 C -0.099 4.099 17 C -0.186 4.186 18 C 0.261 3.739 19 O -0.483 6.483 20 H 0.074 0.926 21 H 0.024 0.976 22 H 0.012 0.988 23 H 0.053 0.947 24 H 0.073 0.927 25 H 0.116 0.884 26 H 0.099 0.901 27 H 0.243 0.757 28 H 0.266 0.734 29 H 0.223 0.777 30 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 10.264 -19.545 -5.201 22.681 hybrid contribution 0.419 0.585 0.412 0.829 sum 10.683 -18.960 -4.789 22.284 Atomic orbital electron populations 1.70085 1.07731 1.28025 1.51170 1.25984 0.95855 1.03344 0.94415 0.85458 0.78306 0.77885 0.79137 1.18950 1.20275 1.19502 1.21574 0.93322 0.92393 1.51383 0.92725 1.18899 0.94109 0.92277 0.95439 1.21647 0.98614 0.93425 0.99938 1.21583 0.90123 0.82985 1.03520 1.49193 1.39658 1.30607 1.02007 1.75039 1.19885 1.16337 1.06222 1.19528 0.91641 0.90733 0.89840 1.41888 1.51676 1.40887 1.02646 1.22249 0.98485 1.00093 0.89099 1.22741 0.97688 0.95864 1.02323 1.18510 0.85077 0.86655 0.83635 1.90969 1.61988 1.64854 1.30493 0.92551 0.97648 0.98843 0.94728 0.92726 0.88435 0.90149 0.75692 0.73396 0.77744 0.79502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.48 13.29 21.45 0.28 -58.19 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.97 46.03 29.54 68.60 2.03 48.06 16 4 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 6 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.55 -33.38 9.11 25.60 0.23 -33.15 16 8 H 0.05 3.22 7.74 -2.91 -0.02 3.20 16 9 C 0.03 1.74 4.97 29.84 0.15 1.88 16 10 C -0.10 -4.67 5.48 30.59 0.17 -4.50 16 11 C 0.14 5.75 5.70 86.38 0.49 6.25 16 12 N -0.40 -14.45 3.51 -472.30 -1.66 -16.11 16 13 N -0.34 -10.21 11.59 -54.68 -0.63 -10.84 16 14 C 0.35 6.67 7.87 133.74 1.05 7.72 16 15 N -0.82 -7.41 9.10 -54.75 -0.50 -7.91 16 16 C -0.07 -1.04 9.90 22.39 0.22 -0.82 16 17 C -0.16 -3.50 10.00 22.42 0.22 -3.28 16 18 C 0.47 16.66 7.50 84.91 0.64 17.29 16 19 O -0.60 -27.01 16.71 -5.65 -0.09 -27.11 16 20 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 21 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 22 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 23 H 0.03 1.74 8.14 -2.38 -0.02 1.72 16 24 H 0.05 2.55 8.14 -2.39 -0.02 2.53 16 25 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 26 H 0.08 3.51 7.43 -2.39 -0.02 3.49 16 27 H 0.41 3.76 8.95 -92.71 -0.83 2.93 16 28 H 0.43 0.39 8.84 -92.71 -0.82 -0.43 16 29 H 0.21 0.40 8.06 -2.91 -0.02 0.38 16 30 H 0.19 3.01 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -82.52 269.14 2.58 -79.94 By element: Atomic # 1 Polarization: 0.66 SS G_CDS: -0.48 Total: 0.18 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: 3.64 Total: -8.01 kcal Atomic # 7 Polarization: -90.55 SS G_CDS: -2.50 Total: -93.05 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.09 Total: -27.11 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -82.52 2.58 -79.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161161973.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.335 kcal (2) G-P(sol) polarization free energy of solvation -82.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds