Wall clock time and date at job start Mon Mar 30 2020 03:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35995 * 116.99655 * 2 1 4 4 C 1.39197 * 120.07130 * 90.00493 * 3 2 1 5 5 O 1.35994 * 120.07218 * 359.97387 * 4 3 2 6 6 C 1.38519 * 119.85368 * 180.02562 * 4 3 2 7 7 C 1.38282 * 119.99912 * 359.97438 * 6 4 3 8 8 C 1.38210 * 120.14793 * 0.02562 * 7 6 4 9 9 C 1.38284 * 120.14409 * 359.67417 * 8 7 6 10 10 C 1.50704 * 120.00122 * 180.32545 * 9 8 7 11 11 H 1.09000 * 109.47256 * 145.27623 * 10 9 8 12 12 N 1.46895 * 109.47037 * 25.27628 * 10 9 8 13 13 C 1.50699 * 109.46888 * 265.27673 * 10 9 8 14 14 H 1.07998 * 120.00449 * 359.97438 * 13 10 9 15 15 C 1.37884 * 120.00147 * 179.97438 * 13 10 9 16 16 N 1.31514 * 119.99684 * 0.02562 * 15 13 10 17 17 Si 1.86791 * 120.00300 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47207 * 90.00207 * 17 15 13 19 19 H 1.48504 * 109.47230 * 210.00344 * 17 15 13 20 20 H 1.48502 * 109.47281 * 330.00569 * 17 15 13 21 21 H 1.09005 * 109.47329 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47352 * 299.99794 * 1 2 3 23 23 H 1.08996 * 109.47452 * 60.00247 * 1 2 3 24 24 H 0.96695 * 114.00161 * 90.00261 * 5 4 3 25 25 H 1.08004 * 120.00359 * 180.02562 * 6 4 3 26 26 H 1.08004 * 119.92705 * 179.97438 * 7 6 4 27 27 H 1.07997 * 119.92856 * 179.97438 * 8 7 6 28 28 H 1.00905 * 111.00208 * 300.00014 * 12 10 9 29 29 H 1.00895 * 111.00257 * 63.95722 * 12 10 9 30 30 H 0.96998 * 119.99963 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 2.3631 1.8332 1.2046 5 8 2.0553 1.2301 2.3841 6 6 2.9914 3.0677 1.1994 7 6 3.3030 3.6797 -0.0008 8 6 2.9886 3.0627 -1.1969 9 6 2.3669 1.8275 -1.1987 10 6 2.0321 1.1543 -2.5048 11 1 2.1442 0.0754 -2.3967 12 7 2.9411 1.6384 -3.5523 13 6 0.6100 1.4760 -2.8856 14 1 0.0086 2.1046 -2.2457 15 6 0.0765 0.9677 -4.0511 16 7 0.8087 0.2017 -4.8300 17 14 -1.6865 1.3658 -4.5228 18 1 -1.7119 2.6031 -5.3436 19 1 -2.2555 0.2400 -5.3064 20 1 -2.4936 1.5709 -3.2932 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 2.7533 0.6545 2.7253 25 1 3.2386 3.5518 2.1326 26 1 3.7926 4.6424 -0.0036 27 1 3.2333 3.5441 -2.1322 28 1 2.8560 2.6368 -3.6718 29 1 3.8951 1.3782 -3.3519 30 1 0.4333 -0.1561 -5.6497 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238436890.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:54 Heat of formation + Delta-G solvation = -48.855640 kcal Electronic energy + Delta-G solvation = -15553.729011 eV Core-core repulsion = 12928.831127 eV Total energy + Delta-G solvation = -2624.897884 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.80133 -36.90819 -36.49614 -34.18048 -31.61789 -29.37294 -28.61322 -26.55321 -25.59909 -23.06991 -21.63049 -20.22607 -17.69115 -16.98013 -16.44979 -15.88742 -15.15945 -14.78302 -14.53249 -14.05534 -13.85905 -13.33898 -13.10794 -12.51584 -12.11925 -11.76663 -11.37331 -11.11021 -11.01734 -10.76860 -10.71983 -10.47128 -9.77993 -9.29205 -9.11184 -8.46509 -8.07795 -7.90222 -7.12143 -5.90478 -4.05328 1.61406 1.81673 3.30540 3.37924 3.39746 3.90194 4.44330 4.48276 4.75553 5.29633 5.34997 5.50509 5.75119 5.96441 5.99910 6.05151 6.18480 6.29064 6.44024 6.61478 6.71053 6.89538 6.96850 7.19987 7.51786 7.83045 7.84618 8.16823 8.29903 8.59931 8.97383 9.10739 9.61680 11.13587 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.031399 B = 0.010206 C = 0.008886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.545487 B = 2742.877625 C = 3150.390695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.329 6.329 3 C 0.074 3.926 4 C 0.078 3.922 5 O -0.496 6.496 6 C -0.162 4.162 7 C -0.114 4.114 8 C -0.128 4.128 9 C -0.077 4.077 10 C 0.257 3.743 11 H 0.058 0.942 12 N -0.809 5.809 13 C -0.528 4.528 14 H 0.051 0.949 15 C 0.086 3.914 16 N -0.842 5.842 17 Si 0.881 3.119 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.275 1.275 21 H 0.081 0.919 22 H 0.031 0.969 23 H 0.077 0.923 24 H 0.383 0.617 25 H 0.121 0.879 26 H 0.119 0.881 27 H 0.123 0.877 28 H 0.317 0.683 29 H 0.299 0.701 30 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.711 3.231 9.337 10.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.246 6.246 3 C 0.029 3.971 4 C 0.033 3.967 5 O -0.306 6.306 6 C -0.181 4.181 7 C -0.132 4.132 8 C -0.146 4.146 9 C -0.080 4.080 10 C 0.147 3.853 11 H 0.076 0.924 12 N -0.336 5.336 13 C -0.566 4.566 14 H 0.070 0.930 15 C -0.122 4.122 16 N -0.476 5.476 17 Si 0.709 3.291 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.200 1.200 21 H 0.099 0.901 22 H 0.049 0.951 23 H 0.096 0.904 24 H 0.238 0.762 25 H 0.139 0.861 26 H 0.137 0.863 27 H 0.141 0.859 28 H 0.130 0.870 29 H 0.110 0.890 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.842 2.753 8.579 9.447 hybrid contribution -0.273 0.785 0.629 1.042 sum 2.570 3.538 9.208 10.193 Atomic orbital electron populations 1.23086 0.78683 1.02482 1.01608 1.85847 1.20268 1.24192 1.94274 1.18950 0.99645 0.87384 0.91111 1.18923 1.00514 0.92700 0.84573 1.84775 1.45314 1.64612 1.35856 1.21080 1.02465 0.96051 0.98470 1.20926 1.00532 0.99631 0.92092 1.20974 1.00484 0.95266 0.97912 1.22154 0.93199 0.93875 0.98810 1.18157 0.92567 0.95002 0.79612 0.92448 1.59190 1.07072 1.17321 1.49987 1.20696 0.95185 1.33373 1.07355 0.93036 1.24926 0.96629 0.94452 0.96154 1.70099 1.35002 1.30706 1.11815 0.86804 0.85630 0.78049 0.78655 1.20672 1.21192 1.20003 0.90057 0.95058 0.90425 0.76219 0.86124 0.86322 0.85893 0.86991 0.89033 0.93368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 11.13 101.05 1.12 1.82 16 2 O -0.33 -7.07 9.34 -34.20 -0.32 -7.39 16 3 C 0.07 1.54 5.71 -39.12 -0.22 1.32 16 4 C 0.08 1.41 6.72 -39.12 -0.26 1.14 16 5 O -0.50 -7.97 13.29 -34.20 -0.45 -8.43 16 6 C -0.16 -2.60 9.98 -39.46 -0.39 -2.99 16 7 C -0.11 -1.80 10.04 -39.58 -0.40 -2.20 16 8 C -0.13 -2.36 9.27 -39.57 -0.37 -2.72 16 9 C -0.08 -1.65 4.99 -104.50 -0.52 -2.18 16 10 C 0.26 6.30 2.57 -70.02 -0.18 6.12 16 11 H 0.06 1.61 7.69 -51.93 -0.40 1.21 16 12 N -0.81 -18.66 8.14 -6.65 -0.05 -18.72 16 13 C -0.53 -14.05 6.92 -34.44 -0.24 -14.29 16 14 H 0.05 1.39 7.32 -52.49 -0.38 1.01 16 15 C 0.09 2.34 5.39 -17.82 -0.10 2.24 16 16 N -0.84 -24.10 12.77 55.43 0.71 -23.40 16 17 Si 0.88 20.92 29.54 -169.99 -5.02 15.90 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 22 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.08 1.70 5.70 -51.93 -0.30 1.41 16 24 H 0.38 4.32 9.06 45.56 0.41 4.73 16 25 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 26 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 27 H 0.12 2.12 6.29 -52.49 -0.33 1.79 16 28 H 0.32 6.87 7.20 -39.29 -0.28 6.59 16 29 H 0.30 6.19 9.06 -39.29 -0.36 5.84 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 260.13 15.07 3.92 3.92 Total: -1.00 -30.63 260.13 -5.24 -35.86 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -2.46 Total: 13.98 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -1.55 Total: -11.73 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: 0.65 Total: -42.11 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.77 Total: -15.82 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.63 -5.24 -35.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238436890.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.992 kcal (2) G-P(sol) polarization free energy of solvation -30.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds