Wall clock time and date at job start Mon Mar 30 2020 03:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00174 * 2 1 4 4 H 1.48498 * 109.47244 * 239.99584 * 3 2 1 5 5 H 1.48500 * 109.47274 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46970 * 119.99999 * 3 2 1 7 7 C 1.37878 * 119.99864 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00070 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99924 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47317 * 59.99992 * 9 7 2 11 11 N 1.46899 * 109.47067 * 299.99798 * 9 7 2 12 12 C 1.50699 * 109.46995 * 179.97438 * 9 7 2 13 13 C 1.38074 * 120.33449 * 80.22940 * 12 9 7 14 14 N 1.31939 * 120.85509 * 180.26072 * 13 12 9 15 15 C 1.32434 * 121.62312 * 359.74082 * 14 13 12 16 16 N 1.39003 * 119.70816 * 179.97438 * 15 14 13 17 17 C 1.39096 * 120.58578 * 0.02562 * 15 14 13 18 18 C 1.50705 * 120.44662 * 179.97438 * 17 15 14 19 19 O 1.42901 * 109.46732 * 179.97438 * 18 17 15 20 20 C 1.38343 * 119.10211 * 359.97438 * 17 15 14 21 21 H 0.97002 * 120.00035 * 0.02562 * 1 2 3 22 22 H 1.00897 * 110.99494 * 300.00133 * 11 9 7 23 23 H 1.00896 * 111.00019 * 63.95378 * 11 9 7 24 24 H 1.07994 * 119.57184 * 0.02738 * 13 12 9 25 25 H 0.96995 * 119.99947 * 180.02562 * 16 15 14 26 26 H 0.96999 * 119.99590 * 0.02944 * 16 15 14 27 27 H 1.08997 * 109.47208 * 299.98186 * 18 17 15 28 28 H 1.08994 * 109.46937 * 59.98120 * 18 17 15 29 29 H 0.96706 * 113.99586 * 180.02562 * 19 18 17 30 30 H 1.08002 * 120.74485 * 179.97438 * 20 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6246 -2.5571 -0.8896 11 7 0.4059 -2.5767 1.1997 12 6 2.2302 -3.6446 0.0005 13 6 2.8370 -4.0433 1.1750 14 7 3.6998 -5.0414 1.1859 15 6 4.0132 -5.7005 0.0808 16 7 4.9278 -6.7457 0.1380 17 6 3.4361 -5.3554 -1.1368 18 6 3.7954 -6.1072 -2.3926 19 8 3.0713 -5.5624 -3.4975 20 6 2.5277 -4.3128 -1.1795 21 1 -0.4850 0.8401 -0.0004 22 1 0.9637 -2.5251 2.0389 23 1 -0.3013 -1.8572 1.1908 24 1 2.6054 -3.5289 2.0958 25 1 5.1607 -7.2310 -0.6689 26 1 5.3330 -6.9897 0.9848 27 1 4.8655 -6.0143 -2.5780 28 1 3.5375 -7.1594 -2.2725 29 1 3.2534 -5.9992 -4.3409 30 1 2.0640 -4.0223 -2.1106 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238623601.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:35 Heat of formation + Delta-G solvation = -45.736236 kcal Electronic energy + Delta-G solvation = -15014.104713 eV Core-core repulsion = 12421.634848 eV Total energy + Delta-G solvation = -2592.469865 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -41.23980 -37.84364 -37.10934 -35.15962 -33.52870 -32.98703 -30.09031 -27.82179 -27.18105 -24.46560 -23.64779 -21.30226 -19.06754 -18.55032 -18.21280 -17.38083 -17.00491 -16.24739 -16.04867 -15.66170 -15.30441 -14.92220 -14.65753 -14.48069 -13.97450 -13.36693 -13.24231 -12.93491 -12.77799 -12.38759 -12.07216 -11.63237 -11.39669 -11.27770 -10.74493 -10.27600 -10.21009 -9.21129 -8.52548 -8.06478 -6.36663 0.39885 0.71241 1.38720 1.38893 1.47737 2.37339 2.71899 3.04040 3.10150 3.33926 3.81579 4.10052 4.21299 4.32632 4.52527 4.57916 4.72560 4.81923 4.86522 5.29039 5.34930 5.64357 5.77263 5.87428 6.10225 6.47965 6.63045 6.68962 6.93687 7.01047 7.13076 7.38845 7.45810 8.83683 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.032265 B = 0.007782 C = 0.007292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.598982 B = 3597.272541 C = 3838.703807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.023 3.977 3 Si 0.958 3.042 4 H -0.276 1.276 5 H -0.279 1.279 6 H -0.272 1.272 7 C -0.558 4.558 8 H 0.043 0.957 9 C 0.258 3.742 10 H 0.008 0.992 11 N -0.842 5.842 12 C -0.156 4.156 13 C 0.139 3.861 14 N -0.555 5.555 15 C 0.381 3.619 16 N -0.838 5.838 17 C -0.216 4.216 18 C 0.138 3.862 19 O -0.589 6.589 20 C -0.036 4.036 21 H 0.268 0.732 22 H 0.318 0.682 23 H 0.346 0.654 24 H 0.149 0.851 25 H 0.417 0.583 26 H 0.408 0.592 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.401 0.599 30 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.116 -12.422 -3.655 15.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.177 4.177 3 Si 0.784 3.216 4 H -0.202 1.202 5 H -0.204 1.204 6 H -0.197 1.197 7 C -0.598 4.598 8 H 0.061 0.939 9 C 0.147 3.853 10 H 0.026 0.974 11 N -0.371 5.371 12 C -0.161 4.161 13 C -0.017 4.017 14 N -0.273 5.273 15 C 0.143 3.857 16 N -0.386 5.386 17 C -0.223 4.223 18 C 0.060 3.940 19 O -0.398 6.398 20 C -0.062 4.062 21 H 0.078 0.922 22 H 0.128 0.872 23 H 0.160 0.840 24 H 0.166 0.834 25 H 0.250 0.750 26 H 0.239 0.761 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.252 0.748 30 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 8.866 -12.864 -2.701 15.855 hybrid contribution 0.496 1.820 -0.976 2.124 sum 9.361 -11.043 -3.677 14.937 Atomic orbital electron populations 1.69835 1.06892 1.28084 1.50682 1.25737 0.95761 1.02260 0.93973 0.85615 0.78426 0.78940 0.78656 1.20192 1.20384 1.19697 1.22009 0.93123 0.92500 1.52170 0.93883 1.17561 0.88588 0.88721 0.90448 0.97406 1.59493 1.18187 1.55359 1.04043 1.20942 1.01495 0.99247 0.94381 1.22026 0.90542 0.91483 0.97644 1.67167 1.19427 1.11286 1.29450 1.18176 0.89994 0.89369 0.88184 1.41921 1.47038 1.35131 1.14483 1.20265 1.04018 1.02387 0.95652 1.20672 0.95395 0.95228 0.82722 1.86503 1.69823 1.63399 1.20081 1.21054 0.94801 0.92835 0.97529 0.92230 0.87171 0.83965 0.83361 0.75041 0.76145 0.90585 0.90304 0.74797 0.86028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.84 11.54 21.45 0.25 -51.59 16 2 C 0.02 1.27 5.38 84.66 0.46 1.72 16 3 Si 0.96 43.88 29.54 68.60 2.03 45.91 16 4 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 7 C -0.56 -31.39 8.71 25.60 0.22 -31.17 16 8 H 0.04 2.46 7.74 -2.91 -0.02 2.44 16 9 C 0.26 13.70 2.96 43.42 0.13 13.82 16 10 H 0.01 0.47 8.03 -2.39 -0.02 0.45 16 11 N -0.84 -42.15 9.02 -174.95 -1.58 -43.73 16 12 C -0.16 -7.29 4.91 -19.76 -0.10 -7.39 16 13 C 0.14 5.98 10.45 84.64 0.88 6.86 16 14 N -0.56 -21.44 10.39 -193.26 -2.01 -23.45 16 15 C 0.38 12.46 7.73 133.04 1.03 13.49 16 16 N -0.84 -17.54 9.01 -55.44 -0.50 -18.04 16 17 C -0.22 -7.31 5.92 -19.63 -0.12 -7.43 16 18 C 0.14 3.12 6.19 71.24 0.44 3.56 16 19 O -0.59 -14.71 12.22 -148.98 -1.82 -16.53 16 20 C -0.04 -1.53 9.12 22.44 0.20 -1.32 16 21 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 22 H 0.32 14.92 7.35 -89.70 -0.66 14.26 16 23 H 0.35 18.41 7.08 -89.70 -0.63 17.77 16 24 H 0.15 6.23 6.66 -2.91 -0.02 6.21 16 25 H 0.42 5.75 7.50 -92.71 -0.70 5.06 16 26 H 0.41 7.53 8.95 -92.71 -0.83 6.70 16 27 H 0.08 1.33 8.06 -2.39 -0.02 1.31 16 28 H 0.08 1.33 8.06 -2.39 -0.02 1.31 16 29 H 0.40 5.09 9.12 -74.05 -0.68 4.42 16 30 H 0.12 5.38 7.11 -2.91 -0.02 5.36 16 Total: -1.00 -68.55 258.37 -2.74 -71.29 By element: Atomic # 1 Polarization: 46.24 SS G_CDS: -2.27 Total: 43.98 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: 3.15 Total: -7.85 kcal Atomic # 7 Polarization: -132.97 SS G_CDS: -3.84 Total: -136.81 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -1.82 Total: -16.53 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -68.55 -2.74 -71.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238623601.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.556 kcal (2) G-P(sol) polarization free energy of solvation -68.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds