Wall clock time and date at job start Mon Mar 30 2020 03:36:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50704 * 1
3 3 C 1.35349 * 126.37604 * 2 1
4 4 C 1.41543 * 105.50014 * 180.14191 * 3 2 1
5 5 C 1.47617 * 126.52567 * 179.84150 * 4 3 2
6 6 O 1.21603 * 119.99711 * 4.95753 * 5 4 3
7 7 N 1.34776 * 119.99944 * 184.95162 * 5 4 3
8 8 C 1.46503 * 120.00272 * 5.14633 * 7 5 4
9 9 C 1.36906 * 119.99953 * 185.41635 * 7 5 4
10 10 H 1.07999 * 120.00009 * 322.10183 * 9 7 5
11 11 C 1.39018 * 120.00104 * 142.09238 * 9 7 5
12 12 N 1.31386 * 120.00217 * 349.79167 * 11 9 7
13 13 Si 1.86805 * 120.00186 * 169.79031 * 11 9 7
14 14 H 1.48491 * 109.47261 * 59.99892 * 13 11 9
15 15 H 1.48500 * 109.47207 * 180.02562 * 13 11 9
16 16 H 1.48507 * 109.46760 * 300.00150 * 13 11 9
17 17 N 1.31860 * 106.95409 * 359.57791 * 4 3 2
18 18 N 1.28472 * 110.06157 * 0.26736 * 17 4 3
19 19 C 1.46497 * 124.88056 * 180.02562 * 18 17 4
20 20 H 1.09003 * 109.46726 * 270.32377 * 1 2 3
21 21 H 1.08993 * 109.47019 * 30.32604 * 1 2 3
22 22 H 1.09000 * 109.46699 * 150.33114 * 1 2 3
23 23 H 1.07994 * 127.25561 * 0.02562 * 3 2 1
24 24 H 1.09000 * 109.47254 * 179.40205 * 8 7 5
25 25 H 1.09000 * 109.47106 * 299.40058 * 8 7 5
26 26 H 1.09003 * 109.46835 * 59.39798 * 8 7 5
27 27 H 0.96995 * 119.99828 * 179.97438 * 12 11 9
28 28 H 1.08999 * 109.47727 * 90.01741 * 19 18 17
29 29 H 1.09005 * 109.47277 * 210.02036 * 19 18 17
30 30 H 1.09005 * 109.47184 * 330.01946 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3098 1.0898 0.0000
4 6 3.6323 0.5854 -0.0034
5 6 4.8759 1.3807 -0.0080
6 8 4.8231 2.5922 0.0818
7 7 6.0698 0.7639 -0.1116
8 6 6.1301 -0.6830 -0.3328
9 6 7.2263 1.4888 -0.0046
10 1 7.2841 2.4793 -0.4311
11 6 8.3260 0.9500 0.6533
12 7 8.1995 -0.1612 1.3429
13 14 9.9837 1.8057 0.5569
14 1 9.8667 3.1760 1.1169
15 1 10.9847 1.0352 1.3376
16 1 10.4176 1.8859 -0.8611
17 7 3.5421 -0.7301 0.0042
18 7 2.3081 -1.0873 0.0062
19 6 1.8374 -2.4745 0.0146
20 1 -0.3633 0.0058 1.0277
21 1 -0.3633 0.8870 -0.5189
22 1 -0.3633 -0.8930 -0.5087
23 1 2.0054 2.1259 0.0004
24 1 7.1717 -0.9972 -0.3999
25 1 5.6481 -1.1981 0.4981
26 1 5.6154 -0.9304 -1.2613
27 1 8.9670 -0.5373 1.8015
28 1 1.7202 -2.8123 1.0443
29 1 0.8781 -2.5360 -0.4993
30 1 2.5638 -3.1078 -0.4949
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259557082.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:36:00
Heat of formation + Delta-G solvation = 57.209193 kcal
Electronic energy + Delta-G solvation = -15232.962948 eV
Core-core repulsion = 12644.957132 eV
Total energy + Delta-G solvation = -2588.005816 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 223.106 amu
Computer time = 1.69 seconds
Orbital eigenvalues (eV)
-42.06389 -37.94561 -34.51039 -33.09621 -32.29586 -31.41316 -27.26200 -26.85634
-25.76751 -24.46604 -21.93420 -20.21011 -18.47676 -16.69148 -16.33167 -15.96722
-15.49550 -14.66190 -13.95736 -13.79535 -13.68806 -13.19328 -12.90310 -12.55001
-12.29676 -12.28824 -11.95739 -11.55656 -11.30989 -11.17247 -10.78122 -10.36958
-10.31511 -9.86363 -8.82692 -8.52695 -8.43576 -8.40787 -7.34040 -6.24415
-3.89394 2.32072 2.77018 2.93324 3.29003 3.30406 3.34702 4.20995
4.59297 4.67891 4.84701 5.04077 5.11129 5.19747 5.25059 5.39570
5.52521 5.61085 5.81059 6.09876 6.28151 6.42201 6.79742 6.98681
7.06372 7.23678 7.45269 7.63492 8.34924 8.49728 8.70333 9.26857
9.48948 10.12799 10.81332
Molecular weight = 223.11amu
Principal moments of inertia in cm(-1)
A = 0.053541 B = 0.007415 C = 0.006677
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 522.839009 B = 3775.063252 C = 4192.223978
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 C -0.008 4.008
3 C -0.190 4.190
4 C 0.019 3.981
5 C 0.529 3.471
6 O -0.581 6.581
7 N -0.427 5.427
8 C 0.113 3.887
9 C -0.308 4.308
10 H 0.093 0.907
11 C 0.035 3.965
12 N -0.874 5.874
13 Si 0.927 3.073
14 H -0.271 1.271
15 H -0.284 1.284
16 H -0.273 1.273
17 N -0.264 5.264
18 N -0.301 5.301
19 C 0.092 3.908
20 H 0.072 0.928
21 H 0.080 0.920
22 H 0.063 0.937
23 H 0.154 0.846
24 H 0.080 0.920
25 H 0.053 0.947
26 H 0.022 0.978
27 H 0.268 0.732
28 H 0.077 0.923
29 H 0.087 0.913
30 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.367 -6.563 -2.611 14.242
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.132 4.132
3 C -0.218 4.218
4 C -0.142 4.142
5 C 0.315 3.685
6 O -0.464 6.464
7 N -0.145 5.145
8 C -0.031 4.031
9 C -0.437 4.437
10 H 0.111 0.889
11 C -0.169 4.169
12 N -0.511 5.511
13 Si 0.754 3.246
14 H -0.196 1.196
15 H -0.210 1.210
16 H -0.198 1.198
17 N -0.099 5.099
18 N -0.089 5.089
19 C -0.050 4.050
20 H 0.091 0.909
21 H 0.099 0.901
22 H 0.082 0.918
23 H 0.172 0.828
24 H 0.099 0.901
25 H 0.072 0.928
26 H 0.041 0.959
27 H 0.078 0.922
28 H 0.096 0.904
29 H 0.105 0.895
30 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -11.628 -7.229 -2.451 13.909
hybrid contribution 0.299 0.753 0.140 0.823
sum -11.329 -6.475 -2.311 13.252
Atomic orbital electron populations
1.20246 0.87502 1.03097 1.02626 1.21254 0.94829 0.87314 1.09798
1.21481 0.91222 0.98997 1.10134 1.22569 0.96000 0.89244 1.06357
1.17051 0.81736 0.86581 0.83087 1.90594 1.86277 1.13277 1.56210
1.43307 1.03976 1.07479 1.59757 1.21529 1.02235 0.81614 0.97716
1.19494 0.88315 1.01531 1.34367 0.88936 1.25508 1.00424 0.96608
0.94384 1.69941 1.31299 1.20259 1.29645 0.85997 0.80844 0.79395
0.78407 1.19642 1.20963 1.19808 1.73994 0.99894 1.15540 1.20426
1.45406 1.03458 1.06750 1.53253 1.21966 1.00922 0.78343 1.03722
0.90949 0.90083 0.91773 0.82832 0.90116 0.92800 0.95943 0.92176
0.90427 0.89481 0.88883
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.75 10.10 36.01 0.36 -0.39 16
2 C -0.01 -0.13 6.92 -82.20 -0.57 -0.70 16
3 C -0.19 -3.74 10.73 -39.35 -0.42 -4.16 16
4 C 0.02 0.46 6.87 -82.77 -0.57 -0.11 16
5 C 0.53 14.86 7.62 -12.43 -0.09 14.76 16
6 O -0.58 -17.72 16.78 5.27 0.09 -17.64 16
7 N -0.43 -12.18 2.94 -123.35 -0.36 -12.55 16
8 C 0.11 2.86 7.92 59.85 0.47 3.33 16
9 C -0.31 -9.13 8.98 -15.00 -0.13 -9.27 16
10 H 0.09 2.79 7.66 -52.49 -0.40 2.39 16
11 C 0.04 0.98 5.00 -17.45 -0.09 0.89 16
12 N -0.87 -24.74 11.35 55.50 0.63 -24.11 16
13 Si 0.93 21.41 29.57 -169.99 -5.03 16.39 16
14 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16
15 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16
16 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16
17 N -0.26 -5.57 8.70 33.42 0.29 -5.28 16
18 N -0.30 -4.92 3.70 -63.85 -0.24 -5.15 16
19 C 0.09 0.93 11.11 59.85 0.66 1.60 16
20 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16
21 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16
22 H 0.06 0.48 7.00 -51.93 -0.36 0.12 16
23 H 0.15 2.84 8.06 -52.49 -0.42 2.41 16
24 H 0.08 2.11 6.20 -51.93 -0.32 1.79 16
25 H 0.05 1.37 6.89 -51.93 -0.36 1.01 16
26 H 0.02 0.52 7.71 -51.93 -0.40 0.12 16
27 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16
28 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16
29 H 0.09 0.60 6.95 -51.93 -0.36 0.24 16
30 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16
LS Contribution 260.93 15.07 3.93 3.93
Total: -1.00 -35.42 260.93 -4.51 -39.93
By element:
Atomic # 1 Polarization: 1.97 SS G_CDS: -3.45 Total: -1.48 kcal
Atomic # 6 Polarization: 6.33 SS G_CDS: -0.37 Total: 5.96 kcal
Atomic # 7 Polarization: -47.41 SS G_CDS: 0.32 Total: -47.09 kcal
Atomic # 8 Polarization: -17.72 SS G_CDS: 0.09 Total: -17.64 kcal
Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.39 kcal
Total LS contribution 3.93 Total: 3.93 kcal
Total: -35.42 -4.51 -39.93 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259557082.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 97.142 kcal
(2) G-P(sol) polarization free energy of solvation -35.421 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.721 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.512 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.932 kcal
(6) G-S(sol) free energy of system = (1) + (5) 57.209 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.69 seconds