Wall clock time and date at job start Mon Mar 30 2020 03:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35349 * 126.37604 * 2 1 4 4 C 1.41543 * 105.50014 * 180.14191 * 3 2 1 5 5 C 1.47617 * 126.52567 * 179.84150 * 4 3 2 6 6 O 1.21603 * 119.99711 * 4.95753 * 5 4 3 7 7 N 1.34776 * 119.99944 * 184.95162 * 5 4 3 8 8 C 1.46503 * 120.00272 * 5.14633 * 7 5 4 9 9 C 1.36906 * 119.99953 * 185.41635 * 7 5 4 10 10 H 1.07999 * 120.00009 * 322.10183 * 9 7 5 11 11 C 1.39018 * 120.00104 * 142.09238 * 9 7 5 12 12 N 1.31386 * 120.00217 * 349.79167 * 11 9 7 13 13 Si 1.86805 * 120.00186 * 169.79031 * 11 9 7 14 14 H 1.48491 * 109.47261 * 59.99892 * 13 11 9 15 15 H 1.48500 * 109.47207 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.46760 * 300.00150 * 13 11 9 17 17 N 1.31860 * 106.95409 * 359.57791 * 4 3 2 18 18 N 1.28472 * 110.06157 * 0.26736 * 17 4 3 19 19 C 1.46497 * 124.88056 * 180.02562 * 18 17 4 20 20 H 1.09003 * 109.46726 * 270.32377 * 1 2 3 21 21 H 1.08993 * 109.47019 * 30.32604 * 1 2 3 22 22 H 1.09000 * 109.46699 * 150.33114 * 1 2 3 23 23 H 1.07994 * 127.25561 * 0.02562 * 3 2 1 24 24 H 1.09000 * 109.47254 * 179.40205 * 8 7 5 25 25 H 1.09000 * 109.47106 * 299.40058 * 8 7 5 26 26 H 1.09003 * 109.46835 * 59.39798 * 8 7 5 27 27 H 0.96995 * 119.99828 * 179.97438 * 12 11 9 28 28 H 1.08999 * 109.47727 * 90.01741 * 19 18 17 29 29 H 1.09005 * 109.47277 * 210.02036 * 19 18 17 30 30 H 1.09005 * 109.47184 * 330.01946 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0898 0.0000 4 6 3.6323 0.5854 -0.0034 5 6 4.8759 1.3807 -0.0080 6 8 4.8231 2.5922 0.0818 7 7 6.0698 0.7639 -0.1116 8 6 6.1301 -0.6830 -0.3328 9 6 7.2263 1.4888 -0.0046 10 1 7.2841 2.4793 -0.4311 11 6 8.3260 0.9500 0.6533 12 7 8.1995 -0.1612 1.3429 13 14 9.9837 1.8057 0.5569 14 1 9.8667 3.1760 1.1169 15 1 10.9847 1.0352 1.3376 16 1 10.4176 1.8859 -0.8611 17 7 3.5421 -0.7301 0.0042 18 7 2.3081 -1.0873 0.0062 19 6 1.8374 -2.4745 0.0146 20 1 -0.3633 0.0058 1.0277 21 1 -0.3633 0.8870 -0.5189 22 1 -0.3633 -0.8930 -0.5087 23 1 2.0054 2.1259 0.0004 24 1 7.1717 -0.9972 -0.3999 25 1 5.6481 -1.1981 0.4981 26 1 5.6154 -0.9304 -1.2613 27 1 8.9670 -0.5373 1.8015 28 1 1.7202 -2.8123 1.0443 29 1 0.8781 -2.5360 -0.4993 30 1 2.5638 -3.1078 -0.4949 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259557082.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:00 Heat of formation + Delta-G solvation = 57.209193 kcal Electronic energy + Delta-G solvation = -15232.962948 eV Core-core repulsion = 12644.957132 eV Total energy + Delta-G solvation = -2588.005816 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -42.06389 -37.94561 -34.51039 -33.09621 -32.29586 -31.41316 -27.26200 -26.85634 -25.76751 -24.46604 -21.93420 -20.21011 -18.47676 -16.69148 -16.33167 -15.96722 -15.49550 -14.66190 -13.95736 -13.79535 -13.68806 -13.19328 -12.90310 -12.55001 -12.29676 -12.28824 -11.95739 -11.55656 -11.30989 -11.17247 -10.78122 -10.36958 -10.31511 -9.86363 -8.82692 -8.52695 -8.43576 -8.40787 -7.34040 -6.24415 -3.89394 2.32072 2.77018 2.93324 3.29003 3.30406 3.34702 4.20995 4.59297 4.67891 4.84701 5.04077 5.11129 5.19747 5.25059 5.39570 5.52521 5.61085 5.81059 6.09876 6.28151 6.42201 6.79742 6.98681 7.06372 7.23678 7.45269 7.63492 8.34924 8.49728 8.70333 9.26857 9.48948 10.12799 10.81332 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.053541 B = 0.007415 C = 0.006677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.839009 B = 3775.063252 C = 4192.223978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.008 4.008 3 C -0.190 4.190 4 C 0.019 3.981 5 C 0.529 3.471 6 O -0.581 6.581 7 N -0.427 5.427 8 C 0.113 3.887 9 C -0.308 4.308 10 H 0.093 0.907 11 C 0.035 3.965 12 N -0.874 5.874 13 Si 0.927 3.073 14 H -0.271 1.271 15 H -0.284 1.284 16 H -0.273 1.273 17 N -0.264 5.264 18 N -0.301 5.301 19 C 0.092 3.908 20 H 0.072 0.928 21 H 0.080 0.920 22 H 0.063 0.937 23 H 0.154 0.846 24 H 0.080 0.920 25 H 0.053 0.947 26 H 0.022 0.978 27 H 0.268 0.732 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.367 -6.563 -2.611 14.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.132 4.132 3 C -0.218 4.218 4 C -0.142 4.142 5 C 0.315 3.685 6 O -0.464 6.464 7 N -0.145 5.145 8 C -0.031 4.031 9 C -0.437 4.437 10 H 0.111 0.889 11 C -0.169 4.169 12 N -0.511 5.511 13 Si 0.754 3.246 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.198 1.198 17 N -0.099 5.099 18 N -0.089 5.089 19 C -0.050 4.050 20 H 0.091 0.909 21 H 0.099 0.901 22 H 0.082 0.918 23 H 0.172 0.828 24 H 0.099 0.901 25 H 0.072 0.928 26 H 0.041 0.959 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.628 -7.229 -2.451 13.909 hybrid contribution 0.299 0.753 0.140 0.823 sum -11.329 -6.475 -2.311 13.252 Atomic orbital electron populations 1.20246 0.87502 1.03097 1.02626 1.21254 0.94829 0.87314 1.09798 1.21481 0.91222 0.98997 1.10134 1.22569 0.96000 0.89244 1.06357 1.17051 0.81736 0.86581 0.83087 1.90594 1.86277 1.13277 1.56210 1.43307 1.03976 1.07479 1.59757 1.21529 1.02235 0.81614 0.97716 1.19494 0.88315 1.01531 1.34367 0.88936 1.25508 1.00424 0.96608 0.94384 1.69941 1.31299 1.20259 1.29645 0.85997 0.80844 0.79395 0.78407 1.19642 1.20963 1.19808 1.73994 0.99894 1.15540 1.20426 1.45406 1.03458 1.06750 1.53253 1.21966 1.00922 0.78343 1.03722 0.90949 0.90083 0.91773 0.82832 0.90116 0.92800 0.95943 0.92176 0.90427 0.89481 0.88883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.10 36.01 0.36 -0.39 16 2 C -0.01 -0.13 6.92 -82.20 -0.57 -0.70 16 3 C -0.19 -3.74 10.73 -39.35 -0.42 -4.16 16 4 C 0.02 0.46 6.87 -82.77 -0.57 -0.11 16 5 C 0.53 14.86 7.62 -12.43 -0.09 14.76 16 6 O -0.58 -17.72 16.78 5.27 0.09 -17.64 16 7 N -0.43 -12.18 2.94 -123.35 -0.36 -12.55 16 8 C 0.11 2.86 7.92 59.85 0.47 3.33 16 9 C -0.31 -9.13 8.98 -15.00 -0.13 -9.27 16 10 H 0.09 2.79 7.66 -52.49 -0.40 2.39 16 11 C 0.04 0.98 5.00 -17.45 -0.09 0.89 16 12 N -0.87 -24.74 11.35 55.50 0.63 -24.11 16 13 Si 0.93 21.41 29.57 -169.99 -5.03 16.39 16 14 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 15 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 17 N -0.26 -5.57 8.70 33.42 0.29 -5.28 16 18 N -0.30 -4.92 3.70 -63.85 -0.24 -5.15 16 19 C 0.09 0.93 11.11 59.85 0.66 1.60 16 20 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 21 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.06 0.48 7.00 -51.93 -0.36 0.12 16 23 H 0.15 2.84 8.06 -52.49 -0.42 2.41 16 24 H 0.08 2.11 6.20 -51.93 -0.32 1.79 16 25 H 0.05 1.37 6.89 -51.93 -0.36 1.01 16 26 H 0.02 0.52 7.71 -51.93 -0.40 0.12 16 27 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.09 0.60 6.95 -51.93 -0.36 0.24 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 260.93 15.07 3.93 3.93 Total: -1.00 -35.42 260.93 -4.51 -39.93 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: -3.45 Total: -1.48 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -0.37 Total: 5.96 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: 0.32 Total: -47.09 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: 0.09 Total: -17.64 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -35.42 -4.51 -39.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259557082.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.142 kcal (2) G-P(sol) polarization free energy of solvation -35.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds