Wall clock time and date at job start Mon Mar 30 2020 03:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35349 * 126.37604 * 2 1 4 4 C 1.41543 * 105.50014 * 180.14191 * 3 2 1 5 5 C 1.47617 * 126.52567 * 179.84150 * 4 3 2 6 6 O 1.21603 * 119.99711 * 4.95753 * 5 4 3 7 7 N 1.34776 * 119.99944 * 184.95162 * 5 4 3 8 8 C 1.46503 * 120.00272 * 5.14633 * 7 5 4 9 9 C 1.36906 * 119.99953 * 185.41635 * 7 5 4 10 10 H 1.07999 * 120.00009 * 322.10183 * 9 7 5 11 11 C 1.39018 * 120.00104 * 142.09238 * 9 7 5 12 12 N 1.31386 * 120.00217 * 349.79167 * 11 9 7 13 13 Si 1.86805 * 120.00186 * 169.79031 * 11 9 7 14 14 H 1.48491 * 109.47261 * 59.99892 * 13 11 9 15 15 H 1.48500 * 109.47207 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.46760 * 300.00150 * 13 11 9 17 17 N 1.31860 * 106.95409 * 359.57791 * 4 3 2 18 18 N 1.28472 * 110.06157 * 0.26736 * 17 4 3 19 19 C 1.46497 * 124.88056 * 180.02562 * 18 17 4 20 20 H 1.09003 * 109.46726 * 270.32377 * 1 2 3 21 21 H 1.08993 * 109.47019 * 30.32604 * 1 2 3 22 22 H 1.09000 * 109.46699 * 150.33114 * 1 2 3 23 23 H 1.07994 * 127.25561 * 0.02562 * 3 2 1 24 24 H 1.09000 * 109.47254 * 179.40205 * 8 7 5 25 25 H 1.09000 * 109.47106 * 299.40058 * 8 7 5 26 26 H 1.09003 * 109.46835 * 59.39798 * 8 7 5 27 27 H 0.96995 * 119.99828 * 179.97438 * 12 11 9 28 28 H 1.08999 * 109.47727 * 90.01741 * 19 18 17 29 29 H 1.09005 * 109.47277 * 210.02036 * 19 18 17 30 30 H 1.09005 * 109.47184 * 330.01946 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0898 0.0000 4 6 3.6323 0.5854 -0.0034 5 6 4.8759 1.3807 -0.0080 6 8 4.8231 2.5922 0.0818 7 7 6.0698 0.7639 -0.1116 8 6 6.1301 -0.6830 -0.3328 9 6 7.2263 1.4888 -0.0046 10 1 7.2841 2.4793 -0.4311 11 6 8.3260 0.9500 0.6533 12 7 8.1995 -0.1612 1.3429 13 14 9.9837 1.8057 0.5569 14 1 9.8667 3.1760 1.1169 15 1 10.9847 1.0352 1.3376 16 1 10.4176 1.8859 -0.8611 17 7 3.5421 -0.7301 0.0042 18 7 2.3081 -1.0873 0.0062 19 6 1.8374 -2.4745 0.0146 20 1 -0.3633 0.0058 1.0277 21 1 -0.3633 0.8870 -0.5189 22 1 -0.3633 -0.8930 -0.5087 23 1 2.0054 2.1259 0.0004 24 1 7.1717 -0.9972 -0.3999 25 1 5.6481 -1.1981 0.4981 26 1 5.6154 -0.9304 -1.2613 27 1 8.9670 -0.5373 1.8015 28 1 1.7202 -2.8123 1.0443 29 1 0.8781 -2.5360 -0.4993 30 1 2.5638 -3.1078 -0.4949 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259557082.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:00 Heat of formation + Delta-G solvation = 31.631101 kcal Electronic energy + Delta-G solvation = -15234.072098 eV Core-core repulsion = 12644.957132 eV Total energy + Delta-G solvation = -2589.114966 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.50326 -40.05635 -36.68662 -34.49290 -33.64637 -33.32472 -28.79638 -28.21544 -27.50047 -26.37910 -23.65368 -21.65900 -20.24543 -18.86155 -17.68599 -17.49659 -17.20270 -16.62867 -15.90951 -15.67323 -14.95916 -14.52720 -14.02583 -13.87954 -13.75323 -13.41828 -13.32217 -13.25799 -13.21357 -12.88157 -12.67296 -12.47521 -12.13014 -11.50911 -10.93075 -10.69592 -9.94077 -9.79322 -9.50805 -8.38389 -6.14452 0.76413 1.23063 1.40388 1.47527 1.53187 1.77312 2.28225 2.56582 3.02273 3.10753 3.57561 3.86425 4.14913 4.32315 4.41198 4.62993 4.66562 4.79586 4.80315 4.84851 4.94248 5.12214 5.13455 5.27355 5.40162 5.48953 6.05850 6.17452 6.47763 7.00536 7.15018 7.34941 7.97520 8.67312 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.053541 B = 0.007415 C = 0.006677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.839009 B = 3775.063252 C = 4192.223978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.023 3.977 3 C -0.222 4.222 4 C -0.028 4.028 5 C 0.515 3.485 6 O -0.624 6.624 7 N -0.444 5.444 8 C 0.133 3.867 9 C -0.353 4.353 10 H 0.072 0.928 11 C 0.000 4.000 12 N -0.895 5.895 13 Si 1.000 3.000 14 H -0.274 1.274 15 H -0.267 1.267 16 H -0.261 1.261 17 N -0.281 5.281 18 N -0.288 5.288 19 C 0.075 3.925 20 H 0.092 0.908 21 H 0.092 0.908 22 H 0.099 0.901 23 H 0.153 0.847 24 H 0.067 0.933 25 H 0.049 0.951 26 H 0.038 0.962 27 H 0.277 0.723 28 H 0.097 0.903 29 H 0.132 0.868 30 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.021 -8.379 -2.658 16.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.102 4.102 3 C -0.250 4.250 4 C -0.186 4.186 5 C 0.304 3.696 6 O -0.510 6.510 7 N -0.162 5.162 8 C -0.010 4.010 9 C -0.481 4.481 10 H 0.089 0.911 11 C -0.203 4.203 12 N -0.532 5.532 13 Si 0.821 3.179 14 H -0.200 1.200 15 H -0.191 1.191 16 H -0.185 1.185 17 N -0.118 5.118 18 N -0.077 5.077 19 C -0.063 4.063 20 H 0.111 0.889 21 H 0.111 0.889 22 H 0.118 0.882 23 H 0.170 0.830 24 H 0.086 0.914 25 H 0.068 0.932 26 H 0.056 0.944 27 H 0.086 0.914 28 H 0.116 0.884 29 H 0.150 0.850 30 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.287 -9.096 -2.502 16.295 hybrid contribution 0.637 1.186 0.174 1.358 sum -12.650 -7.909 -2.328 15.100 Atomic orbital electron populations 1.20509 0.82577 1.05517 1.04603 1.21979 0.97239 0.85467 1.05538 1.21658 0.90409 1.00542 1.12423 1.22026 0.95381 0.90495 1.10701 1.17724 0.83209 0.86693 0.81960 1.90517 1.87351 1.15198 1.57971 1.43571 1.04095 1.08463 1.60064 1.21354 1.01347 0.80074 0.98212 1.19584 0.90052 1.01692 1.36768 0.91064 1.26408 1.03706 0.97160 0.93023 1.70015 1.32752 1.21042 1.29353 0.84933 0.75846 0.77958 0.79140 1.19951 1.19103 1.18526 1.73826 1.02770 1.14246 1.20945 1.46002 1.02195 1.09263 1.50245 1.22574 1.02972 0.74898 1.05856 0.88944 0.88888 0.88200 0.82963 0.91401 0.93210 0.94369 0.91393 0.88432 0.84971 0.88495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.09 10.10 71.24 0.72 -0.37 16 2 C 0.02 0.67 6.92 41.40 0.29 0.95 16 3 C -0.22 -8.78 10.73 22.42 0.24 -8.54 16 4 C -0.03 -1.34 6.87 42.43 0.29 -1.05 16 5 C 0.52 30.61 7.62 86.72 0.66 31.27 16 6 O -0.62 -40.64 16.78 -4.04 -0.07 -40.70 16 7 N -0.44 -26.56 2.94 -662.44 -1.95 -28.51 16 8 C 0.13 6.95 7.92 127.77 1.01 7.96 16 9 C -0.35 -21.88 8.98 84.09 0.75 -21.12 16 10 H 0.07 4.58 7.66 -2.91 -0.02 4.56 16 11 C 0.00 -0.02 5.00 84.95 0.42 0.40 16 12 N -0.89 -51.27 11.35 21.68 0.25 -51.03 16 13 Si 1.00 44.36 29.57 68.60 2.03 46.39 16 14 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 15 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 16 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 17 N -0.28 -11.79 8.70 -48.19 -0.42 -12.21 16 18 N -0.29 -8.68 3.70 -355.92 -1.32 -10.00 16 19 C 0.08 1.20 11.11 127.77 1.42 2.62 16 20 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 21 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 22 H 0.10 0.82 7.00 -2.39 -0.02 0.81 16 23 H 0.15 5.82 8.06 -2.91 -0.02 5.79 16 24 H 0.07 3.64 6.20 -2.39 -0.01 3.63 16 25 H 0.05 2.59 6.89 -2.39 -0.02 2.57 16 26 H 0.04 1.81 7.71 -2.39 -0.02 1.79 16 27 H 0.28 14.61 8.31 -92.71 -0.77 13.84 16 28 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.13 0.98 6.95 -2.38 -0.02 0.96 16 30 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 Total: -1.00 -82.51 260.93 5.48 -77.03 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: 1.14 Total: 6.89 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: 5.81 Total: 12.13 kcal Atomic # 7 Polarization: -98.31 SS G_CDS: -3.43 Total: -101.74 kcal Atomic # 8 Polarization: -40.64 SS G_CDS: -0.07 Total: -40.70 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -82.51 5.48 -77.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259557082.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.666 kcal (2) G-P(sol) polarization free energy of solvation -82.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds