Wall clock time and date at job start Mon Mar 30 2020 03:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35517 * 116.99688 * 2 1 4 4 N 1.32757 * 120.46664 * 0.27957 * 3 2 1 5 5 C 1.32456 * 120.64493 * 180.27083 * 4 3 2 6 6 N 1.38395 * 119.19051 * 179.71655 * 5 4 3 7 7 N 1.32495 * 121.62334 * 359.44262 * 5 4 3 8 8 C 1.32439 * 120.88554 * 0.27403 * 7 5 4 9 9 C 1.50703 * 120.36703 * 179.97438 * 8 7 5 10 10 C 1.38240 * 119.26379 * 0.02562 * 8 7 5 11 11 C 1.50709 * 120.74405 * 180.02562 * 10 8 7 12 12 C 1.50693 * 109.47103 * 89.99482 * 11 10 8 13 13 H 1.08002 * 120.00514 * 359.97438 * 12 11 10 14 14 C 1.37883 * 119.99929 * 180.02562 * 12 11 10 15 15 N 1.31509 * 119.99925 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00043 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47143 * 59.99845 * 16 14 12 18 18 H 1.48499 * 109.46782 * 179.97438 * 16 14 12 19 19 H 1.48490 * 109.46976 * 299.99916 * 16 14 12 20 20 H 1.09004 * 109.47165 * 299.99272 * 1 2 3 21 21 H 1.08994 * 109.47927 * 59.99360 * 1 2 3 22 22 H 1.09001 * 109.47205 * 180.02562 * 1 2 3 23 23 H 0.96999 * 120.00085 * 179.73378 * 6 5 4 24 24 H 0.97005 * 119.99806 * 359.73200 * 6 5 4 25 25 H 1.09003 * 109.46439 * 90.00157 * 9 8 7 26 26 H 1.08994 * 109.47171 * 210.00094 * 9 8 7 27 27 H 1.08999 * 109.46586 * 330.00278 * 9 8 7 28 28 H 1.08998 * 109.47106 * 209.99828 * 11 10 8 29 29 H 1.09005 * 109.46705 * 329.99417 * 11 10 8 30 30 H 0.96999 * 120.00249 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 7 1.3302 2.3267 0.0056 5 6 1.9277 3.5088 0.0002 6 7 1.1540 4.6563 0.0003 7 7 3.2480 3.6198 0.0002 8 6 4.0207 2.5442 0.0001 9 6 5.5212 2.6841 -0.0006 10 6 3.4355 1.2918 -0.0005 11 6 4.2829 0.0454 -0.0001 12 6 4.5644 -0.3700 1.4208 13 1 4.1696 0.2105 2.2416 14 6 5.3269 -1.4908 1.6732 15 7 5.8080 -2.1974 0.6739 16 14 5.6753 -2.0063 3.4346 17 1 4.3936 -2.2796 4.1331 18 1 6.5103 -3.2343 3.4349 19 1 6.3983 -0.9152 4.1358 20 1 -0.3634 0.5137 0.8901 21 1 -0.3635 0.5139 -0.8898 22 1 -0.3634 -1.0277 0.0005 23 1 1.5793 5.5280 0.0003 24 1 0.1863 4.5887 0.0003 25 1 5.8833 2.7179 1.0270 26 1 5.9654 1.8316 -0.5144 27 1 5.8001 3.6038 -0.5147 28 1 3.7515 -0.7553 -0.5143 29 1 5.2235 0.2455 -0.5133 30 1 6.3441 -2.9861 0.8513 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259949800.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:35 Heat of formation + Delta-G solvation = 6.208359 kcal Electronic energy + Delta-G solvation = -15243.579028 eV Core-core repulsion = 12653.361650 eV Total energy + Delta-G solvation = -2590.217378 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.54676 -37.92769 -35.21712 -33.03326 -32.70878 -30.95467 -28.50412 -27.27411 -25.86398 -23.42531 -21.99181 -20.87931 -18.27813 -17.34081 -16.36794 -15.61360 -15.52915 -15.48641 -14.62320 -14.09565 -13.78403 -13.24295 -12.63011 -12.51634 -12.15305 -11.80202 -11.58118 -11.33761 -11.09022 -10.95929 -10.50014 -10.41052 -9.91812 -9.40280 -9.29487 -9.18677 -8.67704 -8.29429 -7.31239 -5.96238 -3.99048 1.84715 2.02491 3.35584 3.39630 3.41655 3.43258 3.74411 4.44702 4.58524 4.70901 5.37341 5.49143 5.53464 5.61593 5.64448 5.88908 6.01646 6.21501 6.27140 6.41640 6.66077 6.97088 7.40321 7.45450 7.63608 7.69846 7.83652 7.97590 8.03802 8.40518 8.94000 9.03658 9.63246 11.13003 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.028672 B = 0.009326 C = 0.007965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.316100 B = 3001.559318 C = 3514.552068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.280 6.280 3 C 0.388 3.612 4 N -0.632 5.632 5 C 0.572 3.428 6 N -0.833 5.833 7 N -0.593 5.593 8 C 0.219 3.781 9 C -0.096 4.096 10 C -0.203 4.203 11 C 0.073 3.927 12 C -0.503 4.503 13 H 0.050 0.950 14 C 0.060 3.940 15 N -0.894 5.894 16 Si 0.891 3.109 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.277 1.277 20 H 0.054 0.946 21 H 0.052 0.948 22 H 0.092 0.908 23 H 0.409 0.591 24 H 0.406 0.594 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.066 0.934 28 H 0.033 0.967 29 H 0.034 0.966 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.404 8.955 -2.061 11.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.183 6.183 3 C 0.201 3.799 4 N -0.372 5.372 5 C 0.213 3.787 6 N -0.384 5.384 7 N -0.321 5.321 8 C 0.077 3.923 9 C -0.153 4.153 10 C -0.211 4.211 11 C 0.035 3.965 12 C -0.542 4.542 13 H 0.069 0.931 14 C -0.141 4.141 15 N -0.534 5.534 16 Si 0.719 3.281 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.203 1.203 20 H 0.072 0.928 21 H 0.071 0.929 22 H 0.111 0.889 23 H 0.239 0.761 24 H 0.236 0.764 25 H 0.102 0.898 26 H 0.110 0.890 27 H 0.085 0.915 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.709 9.206 -2.096 12.189 hybrid contribution -0.043 -0.659 1.074 1.261 sum -7.752 8.547 -1.022 11.584 Atomic orbital electron populations 1.22796 0.78610 1.02532 1.01667 1.86442 1.21522 1.23707 1.86612 1.19619 0.89082 0.83318 0.87848 1.67224 1.41691 0.98056 1.30217 1.18673 0.85486 0.85118 0.89428 1.41481 1.08147 1.04327 1.84427 1.67634 1.03686 1.34409 1.26384 1.21021 0.96533 0.86191 0.88573 1.20698 0.87937 1.02942 1.03698 1.21062 0.91694 0.99629 1.08703 1.18023 0.93180 0.87639 0.97666 1.20968 1.31631 1.10123 0.91432 0.93127 1.24945 0.95915 0.96323 0.96887 1.69933 1.35396 1.17477 1.30548 0.86672 0.78253 0.77933 0.85255 1.20363 1.21251 1.20253 0.92771 0.92915 0.88918 0.76058 0.76380 0.89777 0.89046 0.91507 0.94919 0.94805 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 10.41 101.05 1.05 1.67 16 2 O -0.28 -5.96 9.66 -18.25 -0.18 -6.14 16 3 C 0.39 8.55 7.50 -16.72 -0.13 8.42 16 4 N -0.63 -12.46 9.40 -13.99 -0.13 -12.59 16 5 C 0.57 10.55 8.67 -322.87 -2.80 7.75 16 6 N -0.83 -10.86 9.07 29.75 0.27 -10.59 16 7 N -0.59 -11.63 10.39 -10.22 -0.11 -11.73 16 8 C 0.22 4.57 6.82 -82.33 -0.56 4.00 16 9 C -0.10 -1.72 9.83 36.01 0.35 -1.36 16 10 C -0.20 -4.71 5.12 -104.19 -0.53 -5.24 16 11 C 0.07 1.89 4.55 -29.03 -0.13 1.76 16 12 C -0.50 -14.15 9.09 -34.44 -0.31 -14.46 16 13 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 16 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 21 H 0.05 0.76 8.12 -51.93 -0.42 0.33 16 22 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 23 H 0.41 4.42 8.94 -40.82 -0.37 4.05 16 24 H 0.41 4.37 8.94 -40.82 -0.37 4.01 16 25 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 26 H 0.09 1.70 6.06 -51.93 -0.31 1.38 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.03 0.92 7.62 -51.93 -0.40 0.52 16 29 H 0.03 0.88 6.06 -51.93 -0.31 0.57 16 30 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 264.46 15.07 3.99 3.99 Total: -1.00 -32.10 264.46 -7.01 -39.11 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -3.41 Total: 2.66 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -3.16 Total: 4.16 kcal Atomic # 7 Polarization: -61.20 SS G_CDS: 0.77 Total: -60.43 kcal Atomic # 8 Polarization: -5.96 SS G_CDS: -0.18 Total: -6.14 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -32.10 -7.01 -39.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259949800.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.317 kcal (2) G-P(sol) polarization free energy of solvation -32.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds