Wall clock time and date at job start Mon Mar 30 2020 03:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35517 * 116.99688 * 2 1 4 4 N 1.32757 * 120.46664 * 0.27957 * 3 2 1 5 5 C 1.32456 * 120.64493 * 180.27083 * 4 3 2 6 6 N 1.38395 * 119.19051 * 179.71655 * 5 4 3 7 7 N 1.32495 * 121.62334 * 359.44262 * 5 4 3 8 8 C 1.32439 * 120.88554 * 0.27403 * 7 5 4 9 9 C 1.50703 * 120.36703 * 179.97438 * 8 7 5 10 10 C 1.38240 * 119.26379 * 0.02562 * 8 7 5 11 11 C 1.50709 * 120.74405 * 180.02562 * 10 8 7 12 12 C 1.50693 * 109.47103 * 89.99482 * 11 10 8 13 13 H 1.08002 * 120.00514 * 359.97438 * 12 11 10 14 14 C 1.37883 * 119.99929 * 180.02562 * 12 11 10 15 15 N 1.31509 * 119.99925 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00043 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47143 * 59.99845 * 16 14 12 18 18 H 1.48499 * 109.46782 * 179.97438 * 16 14 12 19 19 H 1.48490 * 109.46976 * 299.99916 * 16 14 12 20 20 H 1.09004 * 109.47165 * 299.99272 * 1 2 3 21 21 H 1.08994 * 109.47927 * 59.99360 * 1 2 3 22 22 H 1.09001 * 109.47205 * 180.02562 * 1 2 3 23 23 H 0.96999 * 120.00085 * 179.73378 * 6 5 4 24 24 H 0.97005 * 119.99806 * 359.73200 * 6 5 4 25 25 H 1.09003 * 109.46439 * 90.00157 * 9 8 7 26 26 H 1.08994 * 109.47171 * 210.00094 * 9 8 7 27 27 H 1.08999 * 109.46586 * 330.00278 * 9 8 7 28 28 H 1.08998 * 109.47106 * 209.99828 * 11 10 8 29 29 H 1.09005 * 109.46705 * 329.99417 * 11 10 8 30 30 H 0.96999 * 120.00249 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 7 1.3302 2.3267 0.0056 5 6 1.9277 3.5088 0.0002 6 7 1.1540 4.6563 0.0003 7 7 3.2480 3.6198 0.0002 8 6 4.0207 2.5442 0.0001 9 6 5.5212 2.6841 -0.0006 10 6 3.4355 1.2918 -0.0005 11 6 4.2829 0.0454 -0.0001 12 6 4.5644 -0.3700 1.4208 13 1 4.1696 0.2105 2.2416 14 6 5.3269 -1.4908 1.6732 15 7 5.8080 -2.1974 0.6739 16 14 5.6753 -2.0063 3.4346 17 1 4.3936 -2.2796 4.1331 18 1 6.5103 -3.2343 3.4349 19 1 6.3983 -0.9152 4.1358 20 1 -0.3634 0.5137 0.8901 21 1 -0.3635 0.5139 -0.8898 22 1 -0.3634 -1.0277 0.0005 23 1 1.5793 5.5280 0.0003 24 1 0.1863 4.5887 0.0003 25 1 5.8833 2.7179 1.0270 26 1 5.9654 1.8316 -0.5144 27 1 5.8001 3.6038 -0.5147 28 1 3.7515 -0.7553 -0.5143 29 1 5.2235 0.2455 -0.5133 30 1 6.3441 -2.9861 0.8513 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259949800.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:35 Heat of formation + Delta-G solvation = -16.503895 kcal Electronic energy + Delta-G solvation = -15244.563906 eV Core-core repulsion = 12653.361650 eV Total energy + Delta-G solvation = -2591.202256 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.09034 -39.44897 -36.77363 -34.96601 -34.19236 -32.68686 -30.03785 -28.90216 -27.45859 -25.25608 -23.58644 -22.56552 -19.74221 -18.80647 -18.48952 -17.08445 -17.02168 -16.77345 -16.62024 -15.55796 -15.18524 -15.04423 -14.36013 -14.11681 -13.86030 -13.43927 -13.15254 -12.88645 -12.78227 -12.60450 -12.38331 -12.29484 -11.63079 -11.23681 -11.09054 -10.65432 -10.55673 -10.15516 -8.89773 -8.09783 -6.22171 0.25644 0.42908 1.42290 1.44139 1.52236 2.00898 2.39313 2.44974 2.97507 3.18077 3.21895 4.01585 4.12451 4.38624 4.41155 4.49539 4.59960 4.68709 4.82922 4.92959 5.09730 5.34098 5.57597 5.71554 5.81399 6.00012 6.12867 6.26993 6.51908 6.54332 6.86844 7.44059 7.52096 8.97512 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.028672 B = 0.009326 C = 0.007965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.316100 B = 3001.559318 C = 3514.552068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.309 6.309 3 C 0.383 3.617 4 N -0.630 5.630 5 C 0.569 3.431 6 N -0.803 5.803 7 N -0.595 5.595 8 C 0.224 3.776 9 C -0.092 4.092 10 C -0.247 4.247 11 C 0.090 3.910 12 C -0.515 4.515 13 H 0.042 0.958 14 C 0.011 3.989 15 N -0.926 5.926 16 Si 0.955 3.045 17 H -0.276 1.276 18 H -0.279 1.279 19 H -0.266 1.266 20 H 0.058 0.942 21 H 0.064 0.936 22 H 0.118 0.882 23 H 0.423 0.577 24 H 0.421 0.579 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.096 0.904 28 H -0.002 1.002 29 H 0.023 0.977 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.165 10.364 -1.249 13.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.212 6.212 3 C 0.196 3.804 4 N -0.371 5.371 5 C 0.208 3.792 6 N -0.356 5.356 7 N -0.324 5.324 8 C 0.081 3.919 9 C -0.149 4.149 10 C -0.255 4.255 11 C 0.052 3.948 12 C -0.553 4.553 13 H 0.060 0.940 14 C -0.187 4.187 15 N -0.566 5.566 16 Si 0.780 3.220 17 H -0.201 1.201 18 H -0.204 1.204 19 H -0.191 1.191 20 H 0.077 0.923 21 H 0.083 0.917 22 H 0.136 0.864 23 H 0.257 0.743 24 H 0.253 0.747 25 H 0.105 0.895 26 H 0.097 0.903 27 H 0.114 0.886 28 H 0.017 0.983 29 H 0.041 0.959 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.521 10.671 -1.285 13.716 hybrid contribution 0.070 -1.000 0.774 1.267 sum -8.451 9.670 -0.511 12.853 Atomic orbital electron populations 1.23111 0.75876 1.04568 1.02440 1.86402 1.24452 1.23955 1.86408 1.19714 0.89060 0.84168 0.87487 1.67332 1.40974 0.97830 1.30936 1.19220 0.85787 0.86114 0.88030 1.41466 1.08694 1.03382 1.82055 1.67760 1.04121 1.33364 1.27193 1.21346 0.97834 0.85765 0.86992 1.20713 0.86281 1.03858 1.04003 1.20886 0.92311 0.99268 1.12987 1.17650 0.92752 0.88230 0.96185 1.21196 1.31594 1.10322 0.92232 0.94007 1.25750 0.95638 0.96263 1.01040 1.70048 1.36002 1.17929 1.32667 0.85660 0.78176 0.77938 0.80230 1.20143 1.20445 1.19135 0.92283 0.91712 0.86369 0.74346 0.74680 0.89543 0.90291 0.88556 0.98320 0.95861 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.04 10.41 113.37 1.18 2.22 16 2 O -0.31 -13.32 9.66 -88.20 -0.85 -14.17 16 3 C 0.38 16.94 7.50 84.83 0.64 17.58 16 4 N -0.63 -24.03 9.40 -310.88 -2.92 -26.95 16 5 C 0.57 19.78 8.67 261.51 2.27 22.04 16 6 N -0.80 -18.36 9.07 -59.78 -0.54 -18.90 16 7 N -0.60 -22.33 10.39 -186.24 -1.94 -24.27 16 8 C 0.22 9.24 6.82 42.47 0.29 9.53 16 9 C -0.09 -3.24 9.83 71.24 0.70 -2.54 16 10 C -0.25 -11.62 5.12 -19.58 -0.10 -11.72 16 11 C 0.09 4.85 4.55 29.10 0.13 4.99 16 12 C -0.52 -29.61 9.09 25.60 0.23 -29.38 16 13 H 0.04 2.42 7.74 -2.91 -0.02 2.40 16 14 C 0.01 0.65 5.46 84.66 0.46 1.11 16 15 N -0.93 -55.40 13.29 21.45 0.28 -55.11 16 16 Si 0.95 44.54 29.54 68.60 2.03 46.57 16 17 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 20 H 0.06 1.70 8.12 -2.39 -0.02 1.68 16 21 H 0.06 1.77 8.12 -2.39 -0.02 1.75 16 22 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 23 H 0.42 7.62 8.94 -92.71 -0.83 6.79 16 24 H 0.42 7.57 8.94 -92.70 -0.83 6.74 16 25 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 26 H 0.08 2.98 6.06 -2.39 -0.01 2.97 16 27 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 28 H 0.00 -0.09 7.62 -2.39 -0.02 -0.11 16 29 H 0.02 1.28 6.06 -2.38 -0.01 1.26 16 30 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -69.24 264.46 1.39 -67.85 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -0.47 Total: 11.14 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: 5.80 Total: 13.85 kcal Atomic # 7 Polarization: -120.12 SS G_CDS: -5.11 Total: -125.23 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.85 Total: -14.17 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -69.24 1.39 -67.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259949800.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.350 kcal (2) G-P(sol) polarization free energy of solvation -69.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds