Wall clock time and date at job start Mon Mar 30 2020 03:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37953 * 120.00117 * 2 1 4 4 N 1.32837 * 118.86811 * 180.02562 * 3 2 1 5 5 C 1.31865 * 121.17029 * 180.02562 * 4 3 2 6 6 C 1.50698 * 120.53591 * 179.97438 * 5 4 3 7 7 C 1.41004 * 118.92630 * 0.02562 * 5 4 3 8 8 C 1.41061 * 121.00222 * 179.97438 * 7 5 4 9 9 H 1.07994 * 120.00431 * 322.52849 * 8 7 5 10 10 C 1.39875 * 119.99698 * 142.25268 * 8 7 5 11 11 N 1.30942 * 119.99732 * 340.28616 * 10 8 7 12 12 Si 1.86793 * 119.99887 * 160.28352 * 10 8 7 13 13 H 1.48494 * 109.47326 * 0.02562 * 12 10 8 14 14 H 1.48507 * 109.46777 * 120.00443 * 12 10 8 15 15 H 1.48501 * 109.47338 * 240.00030 * 12 10 8 16 16 C 1.41951 * 117.98502 * 0.25055 * 7 5 4 17 17 O 1.35286 * 120.63305 * 179.72861 * 16 7 5 18 18 C 1.42896 * 117.00514 * 180.02562 * 17 16 7 19 19 N 1.32380 * 118.73537 * 359.48940 * 16 7 5 20 20 H 1.09001 * 109.46393 * 299.99275 * 1 2 3 21 21 H 1.09000 * 109.47197 * 59.99502 * 1 2 3 22 22 H 1.08996 * 109.47266 * 179.97438 * 1 2 3 23 23 H 0.97007 * 119.99676 * 180.02562 * 2 1 3 24 24 H 1.08995 * 109.47182 * 270.02170 * 6 5 4 25 25 H 1.08997 * 109.47305 * 30.02883 * 6 5 4 26 26 H 1.09004 * 109.47060 * 150.02107 * 6 5 4 27 27 H 0.96998 * 119.99598 * 179.97438 * 11 10 8 28 28 H 1.08998 * 109.47403 * 59.98928 * 18 17 16 29 29 H 1.08997 * 109.47900 * 179.97438 * 18 17 16 30 30 H 1.09008 * 109.46742 * 299.99997 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1548 1.1947 0.0000 4 7 3.4829 1.1684 -0.0005 5 6 4.1876 2.2830 0.0000 6 6 5.6939 2.2365 -0.0001 7 6 3.5089 3.5190 0.0016 8 6 4.2191 4.7378 0.0027 9 1 5.1325 4.8301 0.5714 10 6 3.7433 5.8251 -0.7375 11 7 2.8926 5.6304 -1.7137 12 14 4.3213 7.5547 -0.3333 13 1 5.2751 7.5048 0.8038 14 1 4.9959 8.1409 -1.5193 15 1 3.1529 8.3934 0.0365 16 6 2.0896 3.4995 0.0081 17 8 1.3844 4.6540 0.0155 18 6 -0.0403 4.5440 0.0223 19 7 1.4691 2.3302 0.0020 20 1 -0.3632 0.5137 0.8901 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 1.9500 -0.8401 -0.0004 24 1 6.0570 2.2245 1.0275 25 1 6.0296 1.3363 -0.5147 26 1 6.0845 3.1153 -0.5132 27 1 2.5623 6.3844 -2.2267 28 1 -0.3586 4.0007 0.9120 29 1 -0.4817 5.5406 0.0283 30 1 -0.3675 4.0067 -0.8679 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260025708.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:28 Heat of formation + Delta-G solvation = -7.662567 kcal Electronic energy + Delta-G solvation = -15592.524634 eV Core-core repulsion = 13001.705767 eV Total energy + Delta-G solvation = -2590.818867 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.30081 -38.89420 -36.77708 -35.17207 -33.85378 -32.03235 -29.50522 -28.06805 -27.43734 -25.66235 -23.58902 -22.13759 -19.58089 -19.07385 -17.95688 -16.91979 -16.76617 -16.48636 -15.60398 -15.40451 -15.13187 -14.75523 -14.37777 -13.75040 -13.57257 -13.34847 -13.01263 -12.79799 -12.77817 -12.71920 -12.52824 -12.17992 -12.09082 -11.25038 -10.95500 -10.51806 -9.98313 -9.70940 -8.72009 -8.41644 -6.07249 0.79458 0.97773 1.46297 1.53055 1.59771 2.32499 2.42583 2.73009 2.95347 3.65127 3.79996 4.38665 4.46586 4.49719 4.57133 4.61520 4.73961 4.77623 4.93534 4.99994 5.00911 5.16818 5.37445 5.44893 5.71953 6.26799 6.36770 6.46961 6.67305 6.92660 7.03729 7.26675 7.99063 8.53645 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.031518 B = 0.011313 C = 0.008711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.177238 B = 2474.339324 C = 3213.533212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.718 5.718 3 C 0.475 3.525 4 N -0.579 5.579 5 C 0.082 3.918 6 C -0.062 4.062 7 C -0.054 4.054 8 C -0.480 4.480 9 H 0.084 0.916 10 C 0.047 3.953 11 N -0.817 5.817 12 Si 0.971 3.029 13 H -0.257 1.257 14 H -0.271 1.271 15 H -0.274 1.274 16 C 0.311 3.689 17 O -0.283 6.283 18 C 0.044 3.956 19 N -0.615 5.615 20 H 0.036 0.964 21 H 0.031 0.969 22 H 0.106 0.894 23 H 0.413 0.587 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.281 0.719 28 H 0.046 0.954 29 H 0.105 0.895 30 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.794 -3.020 2.302 4.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.361 5.361 3 C 0.119 3.881 4 N -0.305 5.305 5 C -0.062 4.062 6 C -0.119 4.119 7 C -0.062 4.062 8 C -0.511 4.511 9 H 0.102 0.898 10 C -0.168 4.168 11 N -0.443 5.443 12 Si 0.794 3.206 13 H -0.180 1.180 14 H -0.196 1.196 15 H -0.199 1.199 16 C 0.121 3.879 17 O -0.186 6.186 18 C -0.052 4.052 19 N -0.354 5.354 20 H 0.054 0.946 21 H 0.050 0.950 22 H 0.124 0.876 23 H 0.249 0.751 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.065 0.935 29 H 0.124 0.876 30 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.522 -3.379 2.115 5.320 hybrid contribution 0.178 1.122 -0.113 1.142 sum -3.344 -2.257 2.002 4.504 Atomic orbital electron populations 1.21282 0.78143 1.02616 0.99977 1.43278 1.06126 1.02750 1.83969 1.18788 0.85158 0.86050 0.98090 1.67165 1.06262 1.32817 1.24244 1.21748 0.97288 0.86161 1.00970 1.20267 0.87078 1.02389 1.02188 1.18388 0.89611 0.96034 1.02171 1.19104 1.09655 0.95087 1.27267 0.89769 1.26408 0.93718 1.04135 0.92574 1.69836 1.25704 1.34488 1.14290 0.85318 0.78750 0.77368 0.79196 1.18030 1.19595 1.19924 1.20481 0.89550 0.83322 0.94525 1.86342 1.19421 1.25918 1.86963 1.22721 0.79318 1.02643 1.00508 1.66888 1.42174 0.98133 1.28169 0.94553 0.95043 0.87588 0.75094 0.90820 0.91205 0.90872 0.90917 0.93519 0.87646 0.94441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 3.67 10.65 127.77 1.36 5.03 16 2 N -0.72 -26.46 5.84 -372.60 -2.18 -28.64 16 3 C 0.47 22.75 8.41 261.49 2.20 24.94 16 4 N -0.58 -28.50 10.36 -184.46 -1.91 -30.41 16 5 C 0.08 4.13 6.89 43.23 0.30 4.43 16 6 C -0.06 -2.51 9.72 71.24 0.69 -1.81 16 7 C -0.05 -2.96 5.39 -20.99 -0.11 -3.07 16 8 C -0.48 -25.56 7.75 23.36 0.18 -25.38 16 9 H 0.08 4.25 7.52 -2.91 -0.02 4.23 16 10 C 0.05 2.40 4.50 85.22 0.38 2.78 16 11 N -0.82 -43.84 11.18 21.82 0.24 -43.60 16 12 Si 0.97 39.24 29.60 68.60 2.03 41.27 16 13 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 14 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 15 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 16 C 0.31 16.93 7.03 85.53 0.60 17.53 16 17 O -0.28 -14.59 7.46 -85.71 -0.64 -15.23 16 18 C 0.04 1.78 10.41 113.37 1.18 2.96 16 19 N -0.61 -31.19 8.47 -309.48 -2.62 -33.81 16 20 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 21 H 0.03 1.00 8.14 -2.39 -0.02 0.99 16 22 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 23 H 0.41 13.09 8.94 -92.70 -0.83 12.27 16 24 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 25 H 0.07 2.55 8.14 -2.39 -0.02 2.54 16 26 H 0.07 2.98 7.09 -2.38 -0.02 2.96 16 27 H 0.28 13.86 8.30 -92.71 -0.77 13.09 16 28 H 0.05 1.78 8.12 -2.39 -0.02 1.76 16 29 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 30 H 0.04 1.53 8.12 -2.38 -0.02 1.51 16 Total: -1.00 -65.67 261.92 2.04 -63.64 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.33 Total: 19.37 kcal Atomic # 6 Polarization: 20.64 SS G_CDS: 6.78 Total: 27.42 kcal Atomic # 7 Polarization: -129.99 SS G_CDS: -6.46 Total: -136.46 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.64 Total: -15.23 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 2.03 Total: 41.27 kcal Total: -65.67 2.04 -63.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260025708.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.975 kcal (2) G-P(sol) polarization free energy of solvation -65.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds