Wall clock time and date at job start Mon Mar 30 2020 03:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36022 * 117.00445 * 2 1 4 4 C 1.38507 * 120.87923 * 269.72337 * 3 2 1 5 5 C 1.50698 * 120.43208 * 0.28765 * 4 3 2 6 6 N 1.32583 * 119.13215 * 180.26932 * 4 3 2 7 7 C 1.31724 * 121.05032 * 359.97438 * 6 4 3 8 8 N 1.31823 * 121.93875 * 359.97438 * 7 6 4 9 9 C 1.32861 * 120.74369 * 0.02562 * 8 7 6 10 10 N 1.38778 * 120.55862 * 179.97438 * 9 8 7 11 11 C 1.46502 * 119.99396 * 0.02562 * 10 9 8 12 12 C 1.50701 * 109.46976 * 179.97438 * 11 10 9 13 13 H 1.07997 * 119.99793 * 0.02562 * 12 11 10 14 14 C 1.37872 * 119.99839 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00414 * 359.97438 * 14 12 11 16 16 Si 1.86808 * 119.99990 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46999 * 59.99736 * 16 14 12 18 18 H 1.48492 * 109.47371 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46794 * 300.00232 * 16 14 12 20 20 H 1.08996 * 109.47249 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47626 * 300.00085 * 1 2 3 22 22 H 1.09007 * 109.47129 * 59.99818 * 1 2 3 23 23 H 1.09003 * 109.47190 * 90.00624 * 5 4 3 24 24 H 1.09008 * 109.47126 * 210.00065 * 5 4 3 25 25 H 1.08996 * 109.47201 * 330.00445 * 5 4 3 26 26 H 1.08000 * 119.02990 * 180.02562 * 7 6 4 27 27 H 0.96995 * 120.00227 * 180.02562 * 10 9 8 28 28 H 1.09002 * 109.47357 * 300.00262 * 11 10 9 29 29 H 1.09007 * 109.47356 * 60.00163 * 11 10 9 30 30 H 0.97007 * 120.00431 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0466 1.2119 0.0000 4 6 2.3745 1.8427 -1.1887 5 6 2.0459 1.1982 -2.5107 6 7 2.9809 3.0210 -1.1483 7 6 3.2730 3.5957 0.0004 8 7 2.9793 3.0335 1.1560 9 6 2.3715 1.8530 1.2021 10 7 2.0646 1.2644 2.4208 11 6 2.4106 1.9456 3.6708 12 6 1.9722 1.1024 4.8404 13 1 1.4851 0.1538 4.6696 14 6 2.1941 1.5414 6.1283 15 7 2.7887 2.6959 6.3364 16 14 1.6513 0.4959 7.5781 17 1 2.3380 -0.8197 7.5242 18 1 2.0030 1.1857 8.8452 19 1 0.1819 0.2900 7.5173 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5139 -0.8900 23 1 1.0531 1.5135 -2.8318 24 1 2.7818 1.5012 -3.2556 25 1 2.0650 0.1139 -2.4011 26 1 3.7669 4.5561 -0.0047 27 1 1.6211 0.4022 2.4450 28 1 3.4891 2.0971 3.7156 29 1 1.9062 2.9111 3.7102 30 1 2.9444 3.0050 7.2426 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260093121.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:23 Heat of formation + Delta-G solvation = 3.951346 kcal Electronic energy + Delta-G solvation = -14955.051329 eV Core-core repulsion = 12364.736079 eV Total energy + Delta-G solvation = -2590.315250 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.68543 -37.78660 -35.87352 -33.33631 -32.42040 -30.44423 -28.49324 -27.14986 -26.04921 -23.29564 -22.84571 -21.08067 -18.01028 -17.42569 -17.11255 -16.00668 -15.68243 -14.80446 -14.57544 -14.11820 -13.87688 -13.41201 -13.24390 -12.66983 -12.35269 -12.24215 -12.09012 -11.98853 -11.02688 -10.99072 -10.59893 -10.37422 -10.32687 -10.28594 -9.45140 -9.15732 -8.61784 -8.43071 -7.24235 -6.21532 -4.28753 1.29541 1.84324 3.22669 3.27494 3.28977 3.79677 3.86358 4.30652 4.36335 4.49033 4.73786 5.14789 5.25699 5.35935 5.40363 5.49448 5.58799 5.62614 5.74287 6.01126 6.07974 6.64433 6.99123 7.36163 7.45293 7.48262 7.65372 7.89019 8.04371 8.38682 8.70364 8.91507 9.37128 10.88393 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.041388 B = 0.006879 C = 0.005999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.354786 B = 4069.384971 C = 4666.695390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.317 6.317 3 C -0.098 4.098 4 C 0.181 3.819 5 C -0.099 4.099 6 N -0.574 5.574 7 C 0.335 3.665 8 N -0.565 5.565 9 C 0.430 3.570 10 N -0.677 5.677 11 C 0.255 3.745 12 C -0.548 4.548 13 H 0.062 0.938 14 C 0.066 3.934 15 N -0.884 5.884 16 Si 0.904 3.096 17 H -0.275 1.275 18 H -0.284 1.284 19 H -0.275 1.275 20 H 0.092 0.908 21 H 0.045 0.955 22 H 0.042 0.958 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.192 0.808 27 H 0.405 0.595 28 H 0.031 0.969 29 H 0.030 0.970 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.509 -2.920 -12.902 13.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.231 6.231 3 C -0.154 4.154 4 C 0.039 3.961 5 C -0.157 4.157 6 N -0.297 5.297 7 C 0.045 3.955 8 N -0.293 5.293 9 C 0.182 3.818 10 N -0.302 5.302 11 C 0.135 3.865 12 C -0.586 4.586 13 H 0.080 0.920 14 C -0.138 4.138 15 N -0.521 5.521 16 Si 0.731 3.269 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.201 1.201 20 H 0.110 0.890 21 H 0.064 0.936 22 H 0.060 0.940 23 H 0.094 0.906 24 H 0.097 0.903 25 H 0.098 0.902 26 H 0.209 0.791 27 H 0.242 0.758 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.906 -2.089 -12.472 12.976 hybrid contribution -0.998 -1.330 1.023 1.952 sum -3.904 -3.420 -11.450 12.571 Atomic orbital electron populations 1.23054 0.80547 1.02798 1.00554 1.86126 1.19035 1.23912 1.94060 1.19452 1.11021 0.92275 0.92614 1.21591 0.90554 0.89263 0.94643 1.20625 1.02188 1.00522 0.92350 1.68226 1.19825 1.10806 1.30865 1.24581 0.90957 0.97991 0.81923 1.68125 1.19597 1.10765 1.30803 1.19272 0.87692 0.88006 0.86866 1.45552 1.58890 1.22325 1.03434 1.19211 0.96779 0.92941 0.77612 1.21175 1.41003 1.05710 0.90736 0.92029 1.24913 0.94719 0.95194 0.98936 1.69955 1.40864 1.19359 1.21948 0.86463 0.79097 0.80202 0.81110 1.20013 1.20966 1.20064 0.88965 0.93638 0.93969 0.90632 0.90291 0.90163 0.79145 0.75842 0.95133 0.95217 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.13 101.05 1.13 1.44 16 2 O -0.32 -5.07 8.95 -19.81 -0.18 -5.25 16 3 C -0.10 -1.75 5.78 -38.80 -0.22 -1.98 16 4 C 0.18 2.94 6.83 -82.17 -0.56 2.38 16 5 C -0.10 -1.18 10.02 36.00 0.36 -0.82 16 6 N -0.57 -9.68 10.37 -10.78 -0.11 -9.79 16 7 C 0.34 5.80 12.28 -92.19 -1.13 4.66 16 8 N -0.57 -11.74 9.70 -13.67 -0.13 -11.87 16 9 C 0.43 8.91 7.53 -154.50 -1.16 7.74 16 10 N -0.68 -14.91 5.69 -61.29 -0.35 -15.26 16 11 C 0.26 6.67 5.49 -5.19 -0.03 6.64 16 12 C -0.55 -14.90 9.28 -34.44 -0.32 -15.22 16 13 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 14 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 15 N -0.88 -25.67 13.29 55.43 0.74 -24.94 16 16 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 17 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 20 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 21 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.08 0.86 8.14 -51.92 -0.42 0.44 16 25 H 0.08 0.90 7.60 -51.93 -0.39 0.50 16 26 H 0.19 2.57 8.06 -52.49 -0.42 2.14 16 27 H 0.41 8.28 7.77 -40.82 -0.32 7.97 16 28 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 268.96 15.07 4.05 4.05 Total: -1.00 -30.57 268.96 -6.67 -37.23 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -3.63 Total: 3.42 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: -2.04 Total: 6.59 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: 0.14 Total: -61.85 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: -0.18 Total: -5.25 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.57 -6.67 -37.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260093121.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.186 kcal (2) G-P(sol) polarization free energy of solvation -30.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds