Wall clock time and date at job start Mon Mar 30 2020 03:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36022 * 117.00445 * 2 1 4 4 C 1.38507 * 120.87923 * 269.72337 * 3 2 1 5 5 C 1.50698 * 120.43208 * 0.28765 * 4 3 2 6 6 N 1.32583 * 119.13215 * 180.26932 * 4 3 2 7 7 C 1.31724 * 121.05032 * 359.97438 * 6 4 3 8 8 N 1.31823 * 121.93875 * 359.97438 * 7 6 4 9 9 C 1.32861 * 120.74369 * 0.02562 * 8 7 6 10 10 N 1.38778 * 120.55862 * 179.97438 * 9 8 7 11 11 C 1.46502 * 119.99396 * 0.02562 * 10 9 8 12 12 C 1.50701 * 109.46976 * 179.97438 * 11 10 9 13 13 H 1.07997 * 119.99793 * 0.02562 * 12 11 10 14 14 C 1.37872 * 119.99839 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00414 * 359.97438 * 14 12 11 16 16 Si 1.86808 * 119.99990 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46999 * 59.99736 * 16 14 12 18 18 H 1.48492 * 109.47371 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46794 * 300.00232 * 16 14 12 20 20 H 1.08996 * 109.47249 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47626 * 300.00085 * 1 2 3 22 22 H 1.09007 * 109.47129 * 59.99818 * 1 2 3 23 23 H 1.09003 * 109.47190 * 90.00624 * 5 4 3 24 24 H 1.09008 * 109.47126 * 210.00065 * 5 4 3 25 25 H 1.08996 * 109.47201 * 330.00445 * 5 4 3 26 26 H 1.08000 * 119.02990 * 180.02562 * 7 6 4 27 27 H 0.96995 * 120.00227 * 180.02562 * 10 9 8 28 28 H 1.09002 * 109.47357 * 300.00262 * 11 10 9 29 29 H 1.09007 * 109.47356 * 60.00163 * 11 10 9 30 30 H 0.97007 * 120.00431 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0466 1.2119 0.0000 4 6 2.3745 1.8427 -1.1887 5 6 2.0459 1.1982 -2.5107 6 7 2.9809 3.0210 -1.1483 7 6 3.2730 3.5957 0.0004 8 7 2.9793 3.0335 1.1560 9 6 2.3715 1.8530 1.2021 10 7 2.0646 1.2644 2.4208 11 6 2.4106 1.9456 3.6708 12 6 1.9722 1.1024 4.8404 13 1 1.4851 0.1538 4.6696 14 6 2.1941 1.5414 6.1283 15 7 2.7887 2.6959 6.3364 16 14 1.6513 0.4959 7.5781 17 1 2.3380 -0.8197 7.5242 18 1 2.0030 1.1857 8.8452 19 1 0.1819 0.2900 7.5173 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5139 -0.8900 23 1 1.0531 1.5135 -2.8318 24 1 2.7818 1.5012 -3.2556 25 1 2.0650 0.1139 -2.4011 26 1 3.7669 4.5561 -0.0047 27 1 1.6211 0.4022 2.4450 28 1 3.4891 2.0971 3.7156 29 1 1.9062 2.9111 3.7102 30 1 2.9444 3.0050 7.2426 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260093121.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:22 Heat of formation + Delta-G solvation = -16.479199 kcal Electronic energy + Delta-G solvation = -14955.937264 eV Core-core repulsion = 12364.736079 eV Total energy + Delta-G solvation = -2591.201185 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.08812 -39.05343 -37.53697 -35.11397 -34.06852 -31.93659 -29.84414 -28.70531 -27.39999 -24.91344 -24.48632 -22.63909 -19.63273 -18.81071 -18.58143 -17.82320 -16.95239 -16.71604 -15.92678 -15.47113 -15.26396 -14.99354 -14.75284 -14.10680 -13.92149 -13.75635 -13.25766 -13.04825 -12.86885 -12.79413 -12.24759 -11.97058 -11.88471 -11.60453 -11.47167 -10.76525 -10.49047 -9.85657 -8.88360 -8.31789 -6.48220 -0.04597 0.36803 1.40325 1.43945 1.52246 2.22035 2.43059 2.53936 2.96726 3.03145 3.26733 3.38811 3.84832 4.21659 4.40352 4.46841 4.50946 4.73581 4.76075 4.85786 4.99522 5.10480 5.26238 5.39439 5.47501 5.74857 5.88146 6.09927 6.47427 6.58776 6.82428 7.22704 7.39848 8.79599 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.041388 B = 0.006879 C = 0.005999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.354786 B = 4069.384971 C = 4666.695390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.325 6.325 3 C -0.094 4.094 4 C 0.180 3.820 5 C -0.095 4.095 6 N -0.567 5.567 7 C 0.330 3.670 8 N -0.603 5.603 9 C 0.405 3.595 10 N -0.686 5.686 11 C 0.282 3.718 12 C -0.565 4.565 13 H 0.074 0.926 14 C 0.011 3.989 15 N -0.924 5.924 16 Si 0.981 3.019 17 H -0.265 1.265 18 H -0.281 1.281 19 H -0.264 1.264 20 H 0.122 0.878 21 H 0.029 0.971 22 H 0.061 0.939 23 H 0.098 0.902 24 H 0.092 0.908 25 H 0.090 0.910 26 H 0.223 0.777 27 H 0.411 0.589 28 H -0.007 1.007 29 H -0.005 1.005 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.496 -4.296 -14.189 15.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.239 6.239 3 C -0.149 4.149 4 C 0.038 3.962 5 C -0.152 4.152 6 N -0.290 5.290 7 C 0.041 3.959 8 N -0.331 5.331 9 C 0.159 3.841 10 N -0.315 5.315 11 C 0.159 3.841 12 C -0.603 4.603 13 H 0.092 0.908 14 C -0.190 4.190 15 N -0.562 5.562 16 Si 0.804 3.196 17 H -0.190 1.190 18 H -0.206 1.206 19 H -0.188 1.188 20 H 0.141 0.859 21 H 0.048 0.952 22 H 0.079 0.921 23 H 0.117 0.883 24 H 0.110 0.890 25 H 0.109 0.891 26 H 0.239 0.761 27 H 0.248 0.752 28 H 0.011 0.989 29 H 0.013 0.987 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.898 -3.465 -13.829 14.780 hybrid contribution -0.690 -0.870 1.240 1.665 sum -4.588 -4.335 -12.589 14.083 Atomic orbital electron populations 1.23291 0.78369 1.04902 1.00726 1.86094 1.20988 1.22819 1.93993 1.19488 1.10899 0.92581 0.91899 1.22319 0.89116 0.88806 0.95991 1.20759 1.03739 1.00761 0.89910 1.68365 1.19244 1.11100 1.30288 1.25220 0.90564 0.98906 0.81203 1.68101 1.20645 1.11492 1.32863 1.19622 0.88612 0.88663 0.87245 1.45120 1.60866 1.22734 1.02782 1.18546 0.93869 0.91914 0.79737 1.21556 1.41100 1.06256 0.91367 0.90823 1.25954 0.94434 0.96412 1.02151 1.70101 1.42032 1.21304 1.22807 0.85266 0.79115 0.78351 0.76859 1.19013 1.20604 1.18817 0.85943 0.95192 0.92055 0.88328 0.88966 0.89122 0.76053 0.75179 0.98900 0.98688 0.92100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 11.13 113.37 1.26 1.75 16 2 O -0.32 -9.82 8.95 -93.80 -0.84 -10.66 16 3 C -0.09 -3.26 5.78 22.77 0.13 -3.13 16 4 C 0.18 5.48 6.83 42.51 0.29 5.77 16 5 C -0.09 -1.91 10.02 71.24 0.71 -1.19 16 6 N -0.57 -18.20 10.37 -188.02 -1.95 -20.15 16 7 C 0.33 11.26 12.28 180.90 2.22 13.48 16 8 N -0.60 -25.72 9.70 -197.17 -1.91 -27.64 16 9 C 0.40 17.10 7.53 133.23 1.00 18.11 16 10 N -0.69 -31.35 5.69 -347.81 -1.98 -33.33 16 11 C 0.28 15.52 5.49 85.63 0.47 15.99 16 12 C -0.57 -31.41 9.28 25.60 0.24 -31.18 16 13 H 0.07 3.81 7.60 -2.91 -0.02 3.79 16 14 C 0.01 0.60 5.46 84.65 0.46 1.07 16 15 N -0.92 -55.18 13.29 21.44 0.28 -54.89 16 16 Si 0.98 42.66 29.54 68.60 2.03 44.69 16 17 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 18 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 19 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 20 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 21 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 22 H 0.06 1.15 8.14 -2.38 -0.02 1.14 16 23 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 25 H 0.09 1.68 7.60 -2.39 -0.02 1.67 16 26 H 0.22 5.77 8.06 -2.91 -0.02 5.74 16 27 H 0.41 17.19 7.77 -92.71 -0.72 16.47 16 28 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 29 H 0.00 -0.29 8.14 -2.38 -0.02 -0.31 16 30 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16 Total: -1.00 -67.69 268.96 2.85 -64.83 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: 0.43 Total: 16.48 kcal Atomic # 6 Polarization: 13.86 SS G_CDS: 6.79 Total: 20.65 kcal Atomic # 7 Polarization: -130.44 SS G_CDS: -5.56 Total: -136.00 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: -0.84 Total: -10.66 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -67.69 2.85 -64.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260093121.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.354 kcal (2) G-P(sol) polarization free energy of solvation -67.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds