Wall clock time and date at job start Mon Mar 30 2020 03:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86798 * 120.00046 * 2 1 4 4 H 1.48502 * 109.47258 * 270.00298 * 3 2 1 5 5 H 1.48499 * 109.47306 * 29.99818 * 3 2 1 6 6 H 1.48493 * 109.47402 * 150.00039 * 3 2 1 7 7 C 1.37872 * 119.99808 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00400 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99779 * 179.97438 * 7 2 1 10 10 C 1.50707 * 109.47138 * 179.97438 * 9 7 2 11 11 N 1.30514 * 126.34565 * 305.03011 * 10 9 7 12 12 N 1.28597 * 109.66888 * 179.97438 * 11 10 9 13 13 C 1.30518 * 109.67673 * 0.02562 * 12 11 10 14 14 C 1.50699 * 126.34790 * 179.97438 * 13 12 11 15 15 H 1.09002 * 110.43730 * 25.72130 * 14 13 12 16 16 C 1.54816 * 110.59947 * 263.09693 * 14 13 12 17 17 C 1.54989 * 102.09401 * 220.38810 * 16 14 13 18 18 O 1.44383 * 103.48976 * 37.02246 * 17 16 14 19 19 C 1.43739 * 106.97729 * 319.94114 * 18 17 16 20 20 N 1.35490 * 126.34314 * 125.29377 * 10 9 7 21 21 H 0.96998 * 126.98203 * 0.02562 * 20 10 9 22 22 H 0.97004 * 119.99586 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47252 * 59.99934 * 9 7 2 24 24 H 1.09002 * 109.47311 * 299.99795 * 9 7 2 25 25 H 1.08999 * 110.90817 * 338.58804 * 16 14 13 26 26 H 1.09005 * 110.90433 * 102.19132 * 16 14 13 27 27 H 1.08999 * 110.62077 * 278.52724 * 17 16 14 28 28 H 1.08999 * 110.75439 * 155.59172 * 17 16 14 29 29 H 1.09005 * 109.87679 * 267.08788 * 19 18 17 30 30 H 1.08998 * 110.00208 * 146.00696 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0139 -2.6149 -0.0010 11 7 3.7032 -3.5451 0.8601 12 7 4.3130 -4.6361 0.5576 13 6 5.0409 -4.4513 -0.5099 14 6 5.9086 -5.4798 -1.1883 15 1 5.5382 -6.4845 -0.9844 16 6 7.3800 -5.3407 -0.7272 17 6 8.1571 -5.5634 -2.0496 18 8 7.3276 -4.9191 -3.0403 19 6 5.9628 -5.2228 -2.7067 20 7 4.8757 -3.1619 -0.8920 21 1 5.2891 -2.7206 -1.6504 22 1 -0.4850 0.8401 0.0004 23 1 3.8753 -0.6804 0.8888 24 1 3.8746 -0.6800 -0.8912 25 1 7.5698 -4.3446 -0.3275 26 1 7.6320 -6.1071 0.0058 27 1 8.2537 -6.6278 -2.2635 28 1 9.1386 -5.0914 -2.0050 29 1 5.6390 -6.1135 -3.2452 30 1 5.3200 -4.3807 -2.9633 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260138471.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:58 Heat of formation + Delta-G solvation = 22.131110 kcal Electronic energy + Delta-G solvation = -14907.613712 eV Core-core repulsion = 12318.086796 eV Total energy + Delta-G solvation = -2589.526916 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.61113 -39.48825 -33.81613 -33.58602 -32.57846 -30.87137 -29.49164 -27.59593 -23.75235 -22.96844 -22.43105 -20.90382 -20.12017 -17.57342 -16.89780 -16.57474 -16.17329 -15.31632 -15.22461 -14.46395 -14.13395 -13.36168 -13.17660 -12.39720 -12.32335 -12.31469 -11.78894 -11.68805 -11.21517 -10.99583 -10.76841 -10.63875 -10.29907 -10.18964 -10.02185 -9.74754 -9.42759 -8.68336 -8.30346 -6.13851 -4.14959 2.31984 3.17994 3.21037 3.29703 3.31039 3.49573 3.63991 4.19404 4.32360 4.42736 4.55200 4.82997 4.90537 5.13833 5.19733 5.36338 5.41060 5.43246 5.52997 5.63082 5.76090 5.86286 6.14277 6.52733 6.54767 6.77519 6.90973 7.45203 7.61498 8.39761 8.94197 9.38815 9.42223 10.98940 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.047379 B = 0.006295 C = 0.005992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.833854 B = 4446.870348 C = 4672.093439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.073 3.927 3 Si 0.876 3.124 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.514 4.514 8 H 0.082 0.918 9 C 0.064 3.936 10 C 0.239 3.761 11 N -0.293 5.293 12 N -0.292 5.292 13 C 0.147 3.853 14 C -0.028 4.028 15 H 0.116 0.884 16 C -0.146 4.146 17 C 0.046 3.954 18 O -0.377 6.377 19 C 0.047 3.953 20 N -0.586 5.586 21 H 0.422 0.578 22 H 0.266 0.734 23 H 0.053 0.947 24 H 0.031 0.969 25 H 0.079 0.921 26 H 0.091 0.909 27 H 0.065 0.935 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.319 -8.350 -5.654 19.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.129 4.129 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.553 4.553 8 H 0.100 0.900 9 C 0.024 3.976 10 C -0.029 4.029 11 N -0.133 5.133 12 N -0.133 5.133 13 C -0.121 4.121 14 C -0.049 4.049 15 H 0.134 0.866 16 C -0.184 4.184 17 C -0.030 4.030 18 O -0.296 6.296 19 C -0.030 4.030 20 N -0.200 5.200 21 H 0.261 0.739 22 H 0.076 0.924 23 H 0.071 0.929 24 H 0.049 0.951 25 H 0.098 0.902 26 H 0.110 0.890 27 H 0.083 0.917 28 H 0.114 0.886 29 H 0.091 0.909 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 15.485 -8.870 -4.480 18.399 hybrid contribution 0.942 1.634 -1.309 2.296 sum 16.427 -7.237 -5.789 18.861 Atomic orbital electron populations 1.69886 1.06187 1.27115 1.49784 1.24926 0.94808 0.98805 0.94395 0.86855 0.80464 0.83871 0.78590 1.20102 1.20832 1.18933 1.20782 0.87159 0.95382 1.51965 0.90027 1.18342 0.98549 0.82298 0.98377 1.25569 0.90112 0.99930 0.87274 1.74327 1.20091 0.95490 1.23368 1.74185 1.08226 1.19809 1.11061 1.24023 1.04109 0.85566 0.98420 1.20854 0.93385 0.97059 0.93585 0.86629 1.23236 0.92655 1.04005 0.98540 1.23614 0.95180 0.97945 0.86311 1.88897 1.16010 1.73988 1.50671 1.23300 0.84528 1.02027 0.93191 1.44037 1.38064 1.10926 1.26941 0.73861 0.92357 0.92923 0.95088 0.90224 0.89045 0.91671 0.88636 0.90874 0.89752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.03 13.96 55.43 0.77 -26.25 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 20.46 27.47 -169.99 -4.67 15.79 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.26 -5.85 6.54 56.52 0.37 -5.48 16 7 C -0.51 -14.53 9.63 -34.44 -0.33 -14.86 16 8 H 0.08 2.60 7.98 -52.49 -0.42 2.18 16 9 C 0.06 1.48 4.67 -29.03 -0.14 1.35 16 10 C 0.24 5.22 7.50 -154.99 -1.16 4.06 16 11 N -0.29 -7.05 12.19 32.80 0.40 -6.65 16 12 N -0.29 -6.16 12.21 32.79 0.40 -5.76 16 13 C 0.15 2.46 6.89 -154.99 -1.07 1.39 16 14 C -0.03 -0.32 3.57 -90.24 -0.32 -0.64 16 15 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 16 C -0.15 -1.38 6.70 -24.72 -0.17 -1.55 16 17 C 0.05 0.38 7.72 38.21 0.29 0.67 16 18 O -0.38 -4.18 11.52 -35.23 -0.41 -4.59 16 19 C 0.05 0.50 7.27 37.73 0.27 0.77 16 20 N -0.59 -10.01 5.70 -7.60 -0.04 -10.05 16 21 H 0.42 5.76 8.22 -40.82 -0.34 5.42 16 22 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 23 H 0.05 1.22 7.20 -51.93 -0.37 0.85 16 24 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 25 H 0.08 0.86 7.87 -51.93 -0.41 0.45 16 26 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.95 6.68 -51.93 -0.35 0.60 16 LS Contribution 257.77 15.07 3.88 3.88 Total: -1.00 -33.57 257.77 -5.93 -39.51 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -3.56 Total: 0.95 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -2.72 Total: -6.83 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: 1.53 Total: -48.71 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: -0.41 Total: -4.59 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.67 Total: 15.79 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -33.57 -5.93 -39.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260138471.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.636 kcal (2) G-P(sol) polarization free energy of solvation -33.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds