Wall clock time and date at job start Mon Mar 30 2020 03:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35465 * 116.99951 * 2 1 4 4 N 1.32554 * 119.63428 * 0.02562 * 3 2 1 5 5 N 1.28745 * 121.26967 * 179.97438 * 4 3 2 6 6 C 1.32199 * 120.45514 * 0.02562 * 5 4 3 7 7 C 1.50705 * 120.36687 * 180.02562 * 6 5 4 8 8 H 1.09001 * 109.46428 * 179.97438 * 7 6 5 9 9 C 1.52991 * 109.47531 * 299.99759 * 7 6 5 10 10 C 1.50698 * 109.46972 * 59.99992 * 7 6 5 11 11 H 1.08003 * 120.00550 * 359.97438 * 10 7 6 12 12 C 1.37879 * 119.99904 * 179.97438 * 10 7 6 13 13 N 1.31513 * 119.99932 * 359.97438 * 12 10 7 14 14 Si 1.86803 * 119.99990 * 180.02562 * 12 10 7 15 15 H 1.48494 * 109.47220 * 59.99716 * 14 12 10 16 16 H 1.48503 * 109.46847 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46831 * 299.99430 * 14 12 10 18 18 C 1.38688 * 119.25754 * 0.02562 * 6 5 4 19 19 C 1.50699 * 120.59424 * 180.02562 * 18 6 5 20 20 N 1.32438 * 118.81376 * 359.97438 * 18 6 5 21 21 H 1.09006 * 109.46815 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46995 * 299.99558 * 1 2 3 23 23 H 1.08997 * 109.47088 * 60.00296 * 1 2 3 24 24 H 1.09003 * 109.47116 * 59.99698 * 9 7 6 25 25 H 1.08993 * 109.47738 * 180.02562 * 9 7 6 26 26 H 1.09001 * 109.47029 * 300.00235 * 9 7 6 27 27 H 0.97001 * 120.00228 * 180.02562 * 13 12 10 28 28 H 1.09003 * 109.47257 * 269.97871 * 19 18 6 29 29 H 1.09002 * 109.47206 * 29.97713 * 19 18 6 30 30 H 1.08997 * 109.47207 * 149.97924 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2070 0.0000 4 7 1.3150 2.3141 0.0005 5 7 1.8665 3.4774 0.0010 6 6 3.1833 3.5947 0.0005 7 6 3.8268 4.9575 0.0017 8 1 4.9112 4.8471 0.0015 9 6 3.3919 5.7280 -1.2464 10 6 3.3994 5.7137 1.2332 11 1 2.7286 5.2537 1.9438 12 6 3.8648 6.9928 1.4528 13 7 4.6820 7.5528 0.5879 14 14 3.3356 7.9299 2.9797 15 1 3.7578 7.1817 4.1909 16 1 3.9706 9.2724 2.9814 17 1 1.8583 8.0806 2.9807 18 6 3.9658 2.4497 -0.0011 19 6 5.4695 2.5484 -0.0011 20 7 3.3679 1.2680 -0.0016 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 2.3074 5.8382 -1.2459 25 1 3.8576 6.7134 -1.2458 26 1 3.7010 5.1810 -2.1371 27 1 5.0098 8.4525 0.7425 28 1 5.8321 2.5731 -1.0288 29 1 5.7739 3.4597 0.5136 30 1 5.8904 1.6836 0.5118 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260323351.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:57 Heat of formation + Delta-G solvation = 32.960399 kcal Electronic energy + Delta-G solvation = -15196.077311 eV Core-core repulsion = 12607.019988 eV Total energy + Delta-G solvation = -2589.057323 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.39985 -38.50099 -35.06354 -34.80045 -32.21050 -29.83564 -28.47027 -27.33613 -25.26447 -24.55711 -22.68192 -20.67168 -18.56335 -18.13256 -16.47609 -16.13017 -15.14976 -14.65974 -14.38267 -14.00775 -13.55736 -12.88800 -12.79358 -12.40569 -11.99748 -11.83351 -11.73868 -11.41326 -11.28677 -10.92615 -10.84118 -10.47763 -10.46393 -10.20176 -9.79809 -9.28268 -8.63878 -8.48175 -8.42983 -6.10974 -4.17223 1.02362 1.45130 2.67903 3.29394 3.33430 3.37939 4.00887 4.21284 4.38244 4.60835 4.83637 5.17037 5.22137 5.29809 5.35221 5.57747 5.61350 5.81892 6.03881 6.23315 6.46372 6.73742 6.82624 7.00629 7.04363 7.50334 7.64283 7.75951 7.94576 8.21064 8.82105 9.05050 9.47288 10.94897 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.036034 B = 0.008013 C = 0.007343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.867181 B = 3493.389084 C = 3812.295936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.294 6.294 3 C 0.407 3.593 4 N -0.339 5.339 5 N -0.149 5.149 6 C 0.040 3.960 7 C 0.093 3.907 8 H 0.058 0.942 9 C -0.132 4.132 10 C -0.506 4.506 11 H 0.057 0.943 12 C 0.066 3.934 13 N -0.889 5.889 14 Si 0.897 3.103 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.275 1.275 18 C 0.181 3.819 19 C -0.107 4.107 20 N -0.490 5.490 21 H 0.101 0.899 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.038 0.962 25 H 0.092 0.908 26 H 0.007 0.993 27 H 0.264 0.736 28 H 0.089 0.911 29 H 0.106 0.894 30 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.685 -9.250 -1.873 9.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.195 6.195 3 C 0.102 3.898 4 N -0.200 5.200 5 N 0.001 4.999 6 C -0.110 4.110 7 C 0.072 3.928 8 H 0.076 0.924 9 C -0.190 4.190 10 C -0.545 4.545 11 H 0.075 0.925 12 C -0.135 4.135 13 N -0.527 5.527 14 Si 0.724 3.276 15 H -0.203 1.203 16 H -0.211 1.211 17 H -0.201 1.201 18 C 0.024 3.976 19 C -0.165 4.165 20 N -0.221 5.221 21 H 0.120 0.880 22 H 0.081 0.919 23 H 0.081 0.919 24 H 0.058 0.942 25 H 0.111 0.889 26 H 0.026 0.974 27 H 0.074 0.926 28 H 0.108 0.892 29 H 0.124 0.876 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.677 -9.606 -1.906 10.152 hybrid contribution 0.194 0.533 0.839 1.012 sum -2.483 -9.073 -1.067 9.466 Atomic orbital electron populations 1.22990 0.76008 1.03231 1.03042 1.86001 1.23023 1.22551 1.87902 1.22103 0.87729 0.86955 0.93059 1.73734 1.32672 0.95301 1.18332 1.73558 1.10613 1.11841 1.03851 1.24347 0.91864 1.00371 0.94401 1.17950 0.95454 0.83043 0.96342 0.92413 1.21769 1.00403 1.02816 0.94020 1.20895 1.28934 0.99464 1.05178 0.92519 1.24880 0.94762 0.97170 0.96731 1.69843 1.32400 1.15221 1.35258 0.86573 0.79098 0.78861 0.83058 1.20278 1.21123 1.20078 1.22515 0.99139 0.86940 0.88979 1.20938 0.86396 1.05042 1.04125 1.67897 1.08435 1.29008 1.16736 0.88035 0.91855 0.91902 0.94242 0.88904 0.97435 0.92624 0.89216 0.87560 0.90058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.38 101.05 1.05 1.58 16 2 O -0.29 -5.01 10.56 -18.09 -0.19 -5.20 16 3 C 0.41 8.09 8.57 -90.87 -0.78 7.31 16 4 N -0.34 -7.17 10.42 29.18 0.30 -6.86 16 5 N -0.15 -3.44 11.25 33.65 0.38 -3.07 16 6 C 0.04 0.88 5.47 -82.27 -0.45 0.43 16 7 C 0.09 2.19 2.38 -92.93 -0.22 1.97 16 8 H 0.06 1.33 5.59 -51.93 -0.29 1.04 16 9 C -0.13 -3.08 8.88 37.15 0.33 -2.75 16 10 C -0.51 -13.40 8.45 -34.44 -0.29 -13.69 16 11 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 12 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 13 N -0.89 -23.75 11.32 55.43 0.63 -23.12 16 14 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 18 C 0.18 3.53 6.82 -82.17 -0.56 2.97 16 19 C -0.11 -1.62 9.63 36.01 0.35 -1.28 16 20 N -0.49 -9.75 10.50 -10.80 -0.11 -9.87 16 21 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 23 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 24 H 0.04 0.94 8.06 -51.93 -0.42 0.52 16 25 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 26 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 27 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 28 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.11 1.66 6.19 -51.93 -0.32 1.34 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 261.51 15.07 3.94 3.94 Total: -1.00 -29.44 261.51 -4.16 -33.61 By element: Atomic # 1 Polarization: 0.01 SS G_CDS: -3.42 Total: -3.40 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -0.67 Total: -1.80 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: 1.20 Total: -42.92 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.19 Total: -5.20 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.44 -4.16 -33.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260323351.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.569 kcal (2) G-P(sol) polarization free energy of solvation -29.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds