Wall clock time and date at job start Mon Mar 30 2020 03:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35465 * 116.99951 * 2 1 4 4 N 1.32554 * 119.63428 * 0.02562 * 3 2 1 5 5 N 1.28745 * 121.26967 * 179.97438 * 4 3 2 6 6 C 1.32199 * 120.45514 * 0.02562 * 5 4 3 7 7 C 1.50705 * 120.36687 * 180.02562 * 6 5 4 8 8 H 1.09001 * 109.46428 * 179.97438 * 7 6 5 9 9 C 1.52991 * 109.47531 * 299.99759 * 7 6 5 10 10 C 1.50698 * 109.46972 * 59.99992 * 7 6 5 11 11 H 1.08003 * 120.00550 * 359.97438 * 10 7 6 12 12 C 1.37879 * 119.99904 * 179.97438 * 10 7 6 13 13 N 1.31513 * 119.99932 * 359.97438 * 12 10 7 14 14 Si 1.86803 * 119.99990 * 180.02562 * 12 10 7 15 15 H 1.48494 * 109.47220 * 59.99716 * 14 12 10 16 16 H 1.48503 * 109.46847 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46831 * 299.99430 * 14 12 10 18 18 C 1.38688 * 119.25754 * 0.02562 * 6 5 4 19 19 C 1.50699 * 120.59424 * 180.02562 * 18 6 5 20 20 N 1.32438 * 118.81376 * 359.97438 * 18 6 5 21 21 H 1.09006 * 109.46815 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46995 * 299.99558 * 1 2 3 23 23 H 1.08997 * 109.47088 * 60.00296 * 1 2 3 24 24 H 1.09003 * 109.47116 * 59.99698 * 9 7 6 25 25 H 1.08993 * 109.47738 * 180.02562 * 9 7 6 26 26 H 1.09001 * 109.47029 * 300.00235 * 9 7 6 27 27 H 0.97001 * 120.00228 * 180.02562 * 13 12 10 28 28 H 1.09003 * 109.47257 * 269.97871 * 19 18 6 29 29 H 1.09002 * 109.47206 * 29.97713 * 19 18 6 30 30 H 1.08997 * 109.47207 * 149.97924 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2070 0.0000 4 7 1.3150 2.3141 0.0005 5 7 1.8665 3.4774 0.0010 6 6 3.1833 3.5947 0.0005 7 6 3.8268 4.9575 0.0017 8 1 4.9112 4.8471 0.0015 9 6 3.3919 5.7280 -1.2464 10 6 3.3994 5.7137 1.2332 11 1 2.7286 5.2537 1.9438 12 6 3.8648 6.9928 1.4528 13 7 4.6820 7.5528 0.5879 14 14 3.3356 7.9299 2.9797 15 1 3.7578 7.1817 4.1909 16 1 3.9706 9.2724 2.9814 17 1 1.8583 8.0806 2.9807 18 6 3.9658 2.4497 -0.0011 19 6 5.4695 2.5484 -0.0011 20 7 3.3679 1.2680 -0.0016 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 2.3074 5.8382 -1.2459 25 1 3.8576 6.7134 -1.2458 26 1 3.7010 5.1810 -2.1371 27 1 5.0098 8.4525 0.7425 28 1 5.8321 2.5731 -1.0288 29 1 5.7739 3.4597 0.5136 30 1 5.8904 1.6836 0.5118 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260323351.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:56 Heat of formation + Delta-G solvation = 11.003008 kcal Electronic energy + Delta-G solvation = -15197.029455 eV Core-core repulsion = 12607.019988 eV Total energy + Delta-G solvation = -2590.009467 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.96026 -39.86559 -36.80051 -36.39491 -34.01424 -31.48478 -29.98424 -28.46120 -27.23620 -26.21508 -24.11098 -22.47060 -20.14872 -19.51509 -18.24093 -17.74183 -17.03074 -15.90701 -15.78258 -15.72068 -14.99013 -14.63364 -14.10787 -13.98235 -13.44123 -13.36102 -13.09752 -13.01295 -12.89397 -12.78277 -12.58498 -12.26441 -12.12469 -11.82298 -11.60660 -11.13097 -10.46703 -10.17726 -10.13122 -8.11086 -6.22589 -0.52253 -0.15751 1.33751 1.43996 1.46061 1.53030 2.38112 2.49619 2.67872 3.06974 3.18233 3.46528 3.82237 4.04554 4.31091 4.37522 4.61312 4.68595 4.70505 4.78559 4.90350 5.04232 5.15263 5.30610 5.41659 5.56638 5.83217 5.96370 6.15805 6.27958 6.78404 7.41806 7.46556 8.93363 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.036034 B = 0.008013 C = 0.007343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.867181 B = 3493.389084 C = 3812.295936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.296 6.296 3 C 0.407 3.593 4 N -0.352 5.352 5 N -0.179 5.179 6 C 0.021 3.979 7 C 0.094 3.906 8 H 0.065 0.935 9 C -0.122 4.122 10 C -0.523 4.523 11 H 0.037 0.963 12 C 0.030 3.970 13 N -0.905 5.905 14 Si 0.947 3.053 15 H -0.274 1.274 16 H -0.276 1.276 17 H -0.281 1.281 18 C 0.191 3.809 19 C -0.105 4.105 20 N -0.495 5.495 21 H 0.145 0.855 22 H 0.060 0.940 23 H 0.063 0.937 24 H 0.023 0.977 25 H 0.074 0.926 26 H 0.028 0.972 27 H 0.266 0.734 28 H 0.116 0.884 29 H 0.100 0.900 30 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.257 -10.333 -1.797 10.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.196 6.196 3 C 0.102 3.898 4 N -0.213 5.213 5 N -0.027 5.027 6 C -0.130 4.130 7 C 0.074 3.926 8 H 0.083 0.917 9 C -0.180 4.180 10 C -0.562 4.562 11 H 0.056 0.944 12 C -0.170 4.170 13 N -0.543 5.543 14 Si 0.773 3.227 15 H -0.199 1.199 16 H -0.201 1.201 17 H -0.207 1.207 18 C 0.033 3.967 19 C -0.162 4.162 20 N -0.227 5.227 21 H 0.163 0.837 22 H 0.079 0.921 23 H 0.082 0.918 24 H 0.042 0.958 25 H 0.093 0.907 26 H 0.048 0.952 27 H 0.076 0.924 28 H 0.134 0.866 29 H 0.118 0.882 30 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.269 -10.710 -1.831 11.100 hybrid contribution 0.001 0.767 0.797 1.106 sum -2.268 -9.943 -1.034 10.251 Atomic orbital electron populations 1.23392 0.73552 1.06094 1.02949 1.86048 1.25406 1.20968 1.87206 1.22406 0.88067 0.87602 0.91689 1.73676 1.32718 0.95200 1.19736 1.73420 1.11540 1.13179 1.04609 1.24188 0.91984 1.00591 0.96216 1.17838 0.95869 0.83743 0.95174 0.91696 1.21617 0.99106 1.02166 0.95154 1.21058 1.28830 1.00179 1.06109 0.94423 1.25447 0.94877 0.97766 0.98942 1.69912 1.32781 1.15467 1.36156 0.85791 0.78279 0.78167 0.80489 1.19915 1.20141 1.20702 1.23064 1.00864 0.85933 0.86803 1.21090 0.83377 1.05738 1.05975 1.68076 1.08424 1.28788 1.17399 0.83675 0.92123 0.91823 0.95789 0.90712 0.95249 0.92430 0.86554 0.88154 0.87724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 10.38 113.37 1.18 1.96 16 2 O -0.30 -9.57 10.56 -87.63 -0.92 -10.49 16 3 C 0.41 15.78 8.57 180.43 1.55 17.33 16 4 N -0.35 -14.79 10.42 -174.42 -1.82 -16.61 16 5 N -0.18 -8.32 11.25 -47.44 -0.53 -8.85 16 6 C 0.02 0.94 5.47 42.61 0.23 1.17 16 7 C 0.09 4.44 2.38 -12.29 -0.03 4.41 16 8 H 0.07 2.95 5.59 -2.39 -0.01 2.93 16 9 C -0.12 -5.71 8.88 71.98 0.64 -5.07 16 10 C -0.52 -27.92 8.45 25.60 0.22 -27.70 16 11 H 0.04 2.10 7.74 -2.91 -0.02 2.08 16 12 C 0.03 1.58 5.30 84.66 0.45 2.02 16 13 N -0.90 -48.08 11.32 21.45 0.24 -47.84 16 14 Si 0.95 42.50 29.54 68.60 2.03 44.53 16 15 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 16 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 17 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 18 C 0.19 7.15 6.82 42.57 0.29 7.44 16 19 C -0.10 -2.90 9.63 71.24 0.69 -2.21 16 20 N -0.50 -18.96 10.50 -300.92 -3.16 -22.13 16 21 H 0.15 1.99 8.14 -2.38 -0.02 1.97 16 22 H 0.06 1.42 8.10 -2.39 -0.02 1.40 16 23 H 0.06 1.44 8.10 -2.39 -0.02 1.42 16 24 H 0.02 1.14 8.06 -2.39 -0.02 1.12 16 25 H 0.07 3.75 6.07 -2.39 -0.01 3.74 16 26 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.27 13.51 8.31 -92.71 -0.77 12.73 16 28 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 29 H 0.10 2.96 6.19 -2.39 -0.01 2.94 16 30 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -62.33 261.51 2.19 -60.14 By element: Atomic # 1 Polarization: 0.74 SS G_CDS: 1.15 Total: 1.89 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: 5.21 Total: -0.65 kcal Atomic # 7 Polarization: -90.15 SS G_CDS: -5.27 Total: -95.42 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -0.92 Total: -10.49 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -62.33 2.19 -60.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260323351.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.146 kcal (2) G-P(sol) polarization free energy of solvation -62.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds