Wall clock time and date at job start Mon Mar 30 2020 02:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36007 * 116.99969 * 2 1 4 4 C 1.38718 * 119.98063 * 0.02562 * 3 2 1 5 5 C 1.38087 * 120.02098 * 180.02562 * 4 3 2 6 6 C 1.38882 * 119.98040 * 359.68524 * 5 4 3 7 7 N 1.39937 * 120.02359 * 180.31753 * 6 5 4 8 8 C 1.38843 * 119.95812 * 0.55070 * 6 5 4 9 9 C 1.50701 * 120.00894 * 179.77082 * 8 6 5 10 10 H 1.09002 * 109.47060 * 324.72136 * 9 8 6 11 11 O 1.42903 * 109.46878 * 204.72006 * 9 8 6 12 12 C 1.50699 * 109.47269 * 84.71989 * 9 8 6 13 13 H 1.08000 * 119.99792 * 0.02562 * 12 9 8 14 14 C 1.37878 * 119.99902 * 179.97438 * 12 9 8 15 15 N 1.31522 * 119.99730 * 179.97438 * 14 12 9 16 16 Si 1.86801 * 120.00223 * 0.02562 * 14 12 9 17 17 H 1.48501 * 109.46854 * 89.99533 * 16 14 12 18 18 H 1.48495 * 109.46995 * 209.99565 * 16 14 12 19 19 H 1.48503 * 109.46814 * 329.99605 * 16 14 12 20 20 C 1.38131 * 119.98027 * 359.49156 * 8 6 5 21 21 H 1.09001 * 109.46844 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46897 * 299.99215 * 1 2 3 23 23 H 1.08992 * 109.47165 * 59.99678 * 1 2 3 24 24 H 1.08000 * 119.99288 * 0.02562 * 4 3 2 25 25 H 1.08000 * 120.00815 * 180.02562 * 5 4 3 26 26 H 0.97000 * 120.00115 * 180.23247 * 7 6 5 27 27 H 0.97001 * 119.99859 * 0.23031 * 7 6 5 28 28 H 0.96700 * 114.00234 * 299.99722 * 11 9 8 29 29 H 0.96999 * 119.99784 * 180.02562 * 15 14 12 30 30 H 1.08001 * 119.99125 * 180.25741 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2905 2.3750 0.0005 5 6 1.9166 3.6058 0.0000 6 6 3.3034 3.6790 0.0055 7 7 3.9388 4.9258 0.0117 8 6 4.0592 2.5143 0.0000 9 6 5.5642 2.5924 0.0008 10 1 5.8837 3.4520 -0.5884 11 8 6.1035 1.3977 -0.5683 12 6 6.0588 2.7421 1.4165 13 1 5.3538 2.7768 2.2339 14 6 7.4113 2.8338 1.6681 15 7 7.8428 2.9649 2.9036 16 14 8.6307 2.7732 0.2543 17 1 8.8819 4.1500 -0.2420 18 1 9.9061 2.1765 0.7260 19 1 8.0732 1.9447 -0.8449 20 6 3.4313 1.2840 -0.0003 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 0.2120 2.3179 0.0014 25 1 1.3278 4.5112 0.0008 26 1 4.9074 4.9765 0.0122 27 1 3.4105 5.7393 0.0155 28 1 5.8594 0.5911 -0.0940 29 1 8.7943 3.0298 3.0806 30 1 4.0191 0.3779 -0.0004 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260693700.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:40 Heat of formation + Delta-G solvation = -57.164780 kcal Electronic energy + Delta-G solvation = -15229.426372 eV Core-core repulsion = 12604.168176 eV Total energy + Delta-G solvation = -2625.258195 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.68037 -37.76201 -35.61608 -33.26547 -32.25749 -30.60810 -28.51808 -26.83992 -26.33517 -23.10370 -21.54474 -20.11421 -17.77347 -17.03195 -16.70762 -16.22420 -15.32861 -14.90181 -14.71595 -14.52027 -13.58214 -13.41071 -12.83261 -12.68047 -12.47691 -12.09544 -11.91400 -11.62925 -11.24750 -11.01315 -10.64626 -10.47867 -10.01444 -9.36637 -9.17859 -8.70576 -8.49011 -8.04951 -6.56078 -6.14983 -4.26952 1.95623 2.24457 3.34631 3.45958 3.72137 3.74072 4.41808 4.49622 4.58575 5.16342 5.20009 5.32294 5.35087 5.41783 5.59172 5.73982 5.95701 6.00049 6.19227 6.53024 6.59338 6.77224 6.91187 7.19383 7.39839 7.49301 7.87012 8.16618 8.28546 8.44132 8.80686 8.99415 9.47621 10.95005 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.036775 B = 0.008600 C = 0.007831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.194154 B = 3255.073329 C = 3574.564444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.324 6.324 3 C 0.061 3.939 4 C -0.176 4.176 5 C -0.173 4.173 6 C 0.193 3.807 7 N -0.875 5.875 8 C -0.103 4.103 9 C 0.234 3.766 10 H 0.061 0.939 11 O -0.577 6.577 12 C -0.553 4.553 13 H 0.075 0.925 14 C 0.084 3.916 15 N -0.889 5.889 16 Si 0.866 3.134 17 H -0.287 1.287 18 H -0.294 1.294 19 H -0.217 1.217 20 C -0.099 4.099 21 H 0.090 0.910 22 H 0.048 0.952 23 H 0.047 0.953 24 H 0.117 0.883 25 H 0.114 0.886 26 H 0.405 0.595 27 H 0.388 0.612 28 H 0.359 0.641 29 H 0.265 0.735 30 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.771 -0.573 -6.524 13.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.239 6.239 3 C 0.016 3.984 4 C -0.196 4.196 5 C -0.196 4.196 6 C 0.089 3.911 7 N -0.416 5.416 8 C -0.107 4.107 9 C 0.176 3.824 10 H 0.078 0.922 11 O -0.384 6.384 12 C -0.591 4.591 13 H 0.093 0.907 14 C -0.120 4.120 15 N -0.525 5.525 16 Si 0.692 3.308 17 H -0.213 1.213 18 H -0.221 1.221 19 H -0.139 1.139 20 C -0.118 4.118 21 H 0.109 0.891 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.134 0.866 25 H 0.132 0.868 26 H 0.235 0.765 27 H 0.215 0.785 28 H 0.207 0.793 29 H 0.075 0.925 30 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -11.298 -0.377 -6.840 13.213 hybrid contribution 0.263 0.274 0.093 0.391 sum -11.036 -0.103 -6.747 12.935 Atomic orbital electron populations 1.22868 0.79848 1.02860 1.00691 1.86033 1.20117 1.27511 1.90206 1.18675 0.92093 0.83610 1.04059 1.20711 0.98738 0.91977 1.08146 1.20197 0.92340 0.97055 1.10005 1.17490 0.90972 0.86233 0.96369 1.42461 1.09767 1.03857 1.85541 1.20270 0.98274 0.90692 1.01503 1.18637 0.84016 0.85235 0.94465 0.92192 1.86691 1.76056 1.17128 1.58504 1.21398 0.93080 1.53249 0.91345 0.90714 1.25009 0.98606 0.92643 0.95787 1.69954 1.15103 1.47918 1.19553 0.87103 0.79676 0.78927 0.85071 1.21340 1.22060 1.13920 1.19892 0.90671 0.97921 1.03317 0.89118 0.93309 0.93408 0.86551 0.86815 0.76478 0.78524 0.79348 0.92512 0.85588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.37 16 2 O -0.32 -5.36 10.50 -19.76 -0.21 -5.57 16 3 C 0.06 1.11 6.69 -39.24 -0.26 0.85 16 4 C -0.18 -2.89 9.03 -39.46 -0.36 -3.25 16 5 C -0.17 -2.90 9.89 -39.40 -0.39 -3.29 16 6 C 0.19 3.69 6.74 -83.70 -0.56 3.13 16 7 N -0.88 -14.79 9.00 32.44 0.29 -14.50 16 8 C -0.10 -2.18 5.02 -104.44 -0.52 -2.70 16 9 C 0.23 5.46 1.98 -29.03 -0.06 5.41 16 10 H 0.06 1.40 6.25 -51.93 -0.32 1.07 16 11 O -0.58 -13.21 9.79 -35.23 -0.35 -13.56 16 12 C -0.55 -15.08 9.32 -34.44 -0.32 -15.40 16 13 H 0.07 2.28 7.98 -52.49 -0.42 1.86 16 14 C 0.08 2.37 5.47 -17.82 -0.10 2.27 16 15 N -0.89 -26.67 13.96 55.43 0.77 -25.90 16 16 Si 0.87 21.22 26.99 -169.99 -4.59 16.63 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 19 H -0.22 -5.23 5.31 56.52 0.30 -4.93 16 20 C -0.10 -1.98 9.24 -39.46 -0.36 -2.34 16 21 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 23 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 24 H 0.12 1.55 6.29 -52.49 -0.33 1.22 16 25 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 26 H 0.40 7.33 6.94 -40.82 -0.28 7.05 16 27 H 0.39 5.21 8.84 -40.82 -0.36 4.85 16 28 H 0.36 7.38 7.32 45.56 0.33 7.72 16 29 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.13 2.41 6.40 -52.49 -0.34 2.08 16 LS Contribution 252.79 15.07 3.81 3.81 Total: -1.00 -31.83 252.79 -4.81 -36.64 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -2.60 Total: 16.40 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -1.95 Total: -13.96 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: 1.07 Total: -40.40 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.55 Total: -19.13 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.59 Total: 16.63 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -31.83 -4.81 -36.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260693700.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.522 kcal (2) G-P(sol) polarization free energy of solvation -31.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds