Wall clock time and date at job start Mon Mar 30 2020 03:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31295 * 1 3 3 Si 1.86799 * 119.99663 * 2 1 4 4 H 1.48504 * 109.47212 * 239.99821 * 3 2 1 5 5 H 1.48500 * 109.47395 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47366 * 119.99705 * 3 2 1 7 7 C 1.38983 * 120.00249 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99740 * 180.02562 * 7 2 1 9 9 N 1.37336 * 120.00394 * 0.02562 * 7 2 1 10 10 C 1.36552 * 126.09613 * 179.97438 * 9 7 2 11 11 C 1.35508 * 107.52503 * 179.97438 * 10 9 7 12 12 O 1.36176 * 126.05088 * 180.26094 * 11 10 9 13 13 C 1.42897 * 116.99989 * 179.71629 * 12 11 10 14 14 H 1.08996 * 110.27597 * 329.36733 * 13 12 11 15 15 C 1.54592 * 110.31221 * 207.17198 * 13 12 11 16 16 C 1.54937 * 102.92414 * 219.12719 * 15 13 12 17 17 N 1.48535 * 103.22872 * 37.41240 * 16 15 13 18 18 C 1.47904 * 105.81847 * 320.79435 * 17 16 15 19 19 C 1.40505 * 107.89354 * 0.02562 * 11 10 9 20 20 N 1.30948 * 108.41205 * 0.02562 * 19 11 10 21 21 H 0.96997 * 120.00324 * 359.97438 * 1 2 3 22 22 H 1.08004 * 126.23897 * 0.02562 * 10 9 7 23 23 H 1.09006 * 110.72318 * 337.48083 * 15 13 12 24 24 H 1.08997 * 110.72984 * 100.76560 * 15 13 12 25 25 H 1.09001 * 110.66526 * 278.97416 * 16 15 13 26 26 H 1.09004 * 110.81101 * 155.91633 * 16 15 13 27 27 H 1.00899 * 111.00016 * 200.28096 * 17 16 15 28 28 H 1.08996 * 109.91583 * 265.97969 * 18 17 16 29 29 H 1.08995 * 110.08068 * 144.77041 * 18 17 16 30 30 H 1.07997 * 125.79220 * 180.02562 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2468 1.6178 0.0000 4 1 3.1007 1.6965 -1.2125 5 1 1.2818 2.7465 0.0006 6 1 3.1006 1.6966 1.2125 7 6 2.0079 -1.2036 0.0005 8 1 3.0879 -1.2035 0.0010 9 7 1.3214 -2.3930 0.0005 10 6 1.8748 -3.6414 0.0005 11 6 0.8589 -4.5381 0.0011 12 8 0.9867 -5.8939 0.0063 13 6 -0.2200 -6.6592 0.0122 14 1 -1.0090 -6.1165 0.5328 15 6 0.0191 -8.0331 0.6793 16 6 -0.8181 -8.9957 -0.1999 17 7 -0.6303 -8.4544 -1.5703 18 6 -0.6552 -6.9823 -1.4292 19 6 -0.3496 -3.8214 0.0009 20 7 -0.0715 -2.5418 -0.0004 21 1 -0.4850 0.8400 0.0004 22 1 2.9300 -3.8720 0.0009 23 1 1.0755 -8.2999 0.6451 24 1 -0.3464 -8.0323 1.7062 25 1 -1.8693 -8.9620 0.0864 26 1 -0.4349 -10.0139 -0.1326 27 1 -1.3629 -8.7709 -2.1877 28 1 -1.6642 -6.6095 -1.6049 29 1 0.0374 -6.5268 -2.1370 30 1 -1.3397 -4.2527 0.0016 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260794265.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:45 Heat of formation + Delta-G solvation = 51.077492 kcal Electronic energy + Delta-G solvation = -14928.569690 eV Core-core repulsion = 12340.297983 eV Total energy + Delta-G solvation = -2588.271707 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.72980 -38.48338 -35.95326 -33.34219 -30.26997 -29.80240 -28.55201 -27.18991 -24.85767 -21.57823 -21.33370 -20.16167 -19.36512 -17.75154 -16.75907 -15.96272 -15.40498 -14.89310 -14.07241 -13.89778 -13.69132 -13.10738 -12.85161 -12.76808 -12.16363 -12.02635 -11.63690 -11.54670 -11.20213 -11.08266 -10.90290 -10.53832 -10.38619 -10.26983 -9.26048 -8.77308 -8.50373 -8.12331 -6.72299 -6.54413 -4.21893 2.99437 3.06853 3.10272 3.60459 3.79333 4.11959 4.19953 4.29983 4.77881 4.84601 4.91431 5.03576 5.24549 5.36405 5.62351 5.69771 5.82329 5.95079 6.09186 6.22771 6.29787 6.62084 6.74742 6.83699 7.03350 7.30509 7.32138 7.58309 7.98631 8.53806 8.78459 9.38574 9.62307 10.42380 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.084518 B = 0.005669 C = 0.005535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 331.209508 B = 4938.131977 C = 5057.701823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.321 4.321 8 H 0.117 0.883 9 N -0.142 5.142 10 C -0.077 4.077 11 C -0.072 4.072 12 O -0.300 6.300 13 C 0.090 3.910 14 H 0.070 0.930 15 C -0.121 4.121 16 C 0.038 3.962 17 N -0.669 5.669 18 C 0.019 3.981 19 C -0.109 4.109 20 N -0.245 5.245 21 H 0.274 0.726 22 H 0.151 0.849 23 H 0.086 0.914 24 H 0.076 0.924 25 H 0.040 0.960 26 H 0.083 0.917 27 H 0.334 0.666 28 H 0.044 0.956 29 H 0.090 0.910 30 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.444 -9.874 -0.039 9.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.170 4.170 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.453 4.453 8 H 0.135 0.865 9 N 0.086 4.914 10 C -0.223 4.223 11 C -0.128 4.128 12 O -0.212 6.212 13 C 0.031 3.969 14 H 0.088 0.912 15 C -0.159 4.159 16 C -0.091 4.091 17 N -0.299 5.299 18 C -0.111 4.111 19 C -0.282 4.282 20 N -0.080 5.080 21 H 0.085 0.915 22 H 0.168 0.832 23 H 0.105 0.895 24 H 0.094 0.906 25 H 0.059 0.941 26 H 0.101 0.899 27 H 0.149 0.851 28 H 0.062 0.938 29 H 0.109 0.891 30 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.211 -8.761 -0.081 8.845 hybrid contribution -0.592 0.105 0.118 0.613 sum -1.803 -8.656 0.037 8.842 Atomic orbital electron populations 1.70195 1.06137 1.27991 1.36077 1.25616 0.95708 1.00205 0.95520 0.85886 0.79126 0.79560 0.79532 1.19127 1.20187 1.19143 1.19843 0.91712 0.80387 1.53347 0.86541 1.44482 1.03559 1.03302 1.40054 1.20944 0.97114 0.84415 1.19857 1.18261 0.93426 0.81969 1.19120 1.85909 1.29276 1.14354 1.91711 1.22835 0.87990 0.91762 0.94294 0.91175 1.22580 1.02093 0.92945 0.98254 1.23009 0.97924 0.99083 0.89062 1.63038 1.50744 1.06840 1.09262 1.23244 1.00495 0.88415 0.98916 1.23505 0.96729 0.92858 1.15069 1.78121 0.90766 1.14258 1.24851 0.91520 0.83194 0.89495 0.90566 0.94137 0.89909 0.85053 0.93809 0.89145 0.83462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -21.67 11.82 55.49 0.66 -21.02 16 2 C 0.05 1.19 5.50 -17.50 -0.10 1.10 16 3 Si 0.94 19.07 29.55 -169.99 -5.02 14.04 16 4 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 5 H -0.28 -5.57 7.11 56.52 0.40 -5.16 16 6 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 7 C -0.32 -8.65 10.25 -14.81 -0.15 -8.80 16 8 H 0.12 2.82 7.83 -52.49 -0.41 2.41 16 9 N -0.14 -3.98 3.74 -11.43 -0.04 -4.02 16 10 C -0.08 -1.95 11.49 -16.42 -0.19 -2.14 16 11 C -0.07 -1.75 6.96 -39.70 -0.28 -2.03 16 12 O -0.30 -6.39 9.82 -20.30 -0.20 -6.59 16 13 C 0.09 1.52 3.19 -25.37 -0.08 1.44 16 14 H 0.07 1.19 6.45 -51.93 -0.34 0.85 16 15 C -0.12 -1.64 6.80 -24.87 -0.17 -1.81 16 16 C 0.04 0.44 7.55 -1.90 -0.01 0.42 16 17 N -0.67 -8.76 7.51 -110.08 -0.83 -9.58 16 18 C 0.02 0.29 7.33 -2.75 -0.02 0.27 16 19 C -0.11 -2.72 10.92 -17.07 -0.19 -2.91 16 20 N -0.25 -7.06 10.41 30.78 0.32 -6.74 16 21 H 0.27 7.00 8.31 -40.82 -0.34 6.67 16 22 H 0.15 3.37 8.06 -52.48 -0.42 2.95 16 23 H 0.09 1.25 8.08 -51.93 -0.42 0.83 16 24 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.33 3.56 8.92 -39.29 -0.35 3.21 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 1.60 7.96 -51.93 -0.41 1.19 16 30 H 0.15 3.22 7.03 -52.49 -0.37 2.85 16 LS Contribution 259.36 15.07 3.91 3.91 Total: -1.00 -31.44 259.36 -5.94 -37.38 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -3.55 Total: 7.07 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -1.18 Total: -14.45 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 0.11 Total: -41.36 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.20 Total: -6.59 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.04 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.44 -5.94 -37.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260794265.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.461 kcal (2) G-P(sol) polarization free energy of solvation -31.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds