Wall clock time and date at job start Mon Mar 30 2020 03:19:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31295 * 1
3 3 Si 1.86799 * 119.99663 * 2 1
4 4 H 1.48504 * 109.47212 * 239.99821 * 3 2 1
5 5 H 1.48500 * 109.47395 * 0.02562 * 3 2 1
6 6 H 1.48502 * 109.47366 * 119.99705 * 3 2 1
7 7 C 1.38983 * 120.00249 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99740 * 180.02562 * 7 2 1
9 9 N 1.37336 * 120.00394 * 0.02562 * 7 2 1
10 10 C 1.36552 * 126.09613 * 179.97438 * 9 7 2
11 11 C 1.35508 * 107.52503 * 179.97438 * 10 9 7
12 12 O 1.36176 * 126.05088 * 180.26094 * 11 10 9
13 13 C 1.42897 * 116.99989 * 179.71629 * 12 11 10
14 14 H 1.08996 * 110.27597 * 329.36733 * 13 12 11
15 15 C 1.54592 * 110.31221 * 207.17198 * 13 12 11
16 16 C 1.54937 * 102.92414 * 219.12719 * 15 13 12
17 17 N 1.48535 * 103.22872 * 37.41240 * 16 15 13
18 18 C 1.47904 * 105.81847 * 320.79435 * 17 16 15
19 19 C 1.40505 * 107.89354 * 0.02562 * 11 10 9
20 20 N 1.30948 * 108.41205 * 0.02562 * 19 11 10
21 21 H 0.96997 * 120.00324 * 359.97438 * 1 2 3
22 22 H 1.08004 * 126.23897 * 0.02562 * 10 9 7
23 23 H 1.09006 * 110.72318 * 337.48083 * 15 13 12
24 24 H 1.08997 * 110.72984 * 100.76560 * 15 13 12
25 25 H 1.09001 * 110.66526 * 278.97416 * 16 15 13
26 26 H 1.09004 * 110.81101 * 155.91633 * 16 15 13
27 27 H 1.00899 * 111.00016 * 200.28096 * 17 16 15
28 28 H 1.08996 * 109.91583 * 265.97969 * 18 17 16
29 29 H 1.08995 * 110.08068 * 144.77041 * 18 17 16
30 30 H 1.07997 * 125.79220 * 180.02562 * 19 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3129 0.0000 0.0000
3 14 2.2468 1.6178 0.0000
4 1 3.1007 1.6965 -1.2125
5 1 1.2818 2.7465 0.0006
6 1 3.1006 1.6966 1.2125
7 6 2.0079 -1.2036 0.0005
8 1 3.0879 -1.2035 0.0010
9 7 1.3214 -2.3930 0.0005
10 6 1.8748 -3.6414 0.0005
11 6 0.8589 -4.5381 0.0011
12 8 0.9867 -5.8939 0.0063
13 6 -0.2200 -6.6592 0.0122
14 1 -1.0090 -6.1165 0.5328
15 6 0.0191 -8.0331 0.6793
16 6 -0.8181 -8.9957 -0.1999
17 7 -0.6303 -8.4544 -1.5703
18 6 -0.6552 -6.9823 -1.4292
19 6 -0.3496 -3.8214 0.0009
20 7 -0.0715 -2.5418 -0.0004
21 1 -0.4850 0.8400 0.0004
22 1 2.9300 -3.8720 0.0009
23 1 1.0755 -8.2999 0.6451
24 1 -0.3464 -8.0323 1.7062
25 1 -1.8693 -8.9620 0.0864
26 1 -0.4349 -10.0139 -0.1326
27 1 -1.3629 -8.7709 -2.1877
28 1 -1.6642 -6.6095 -1.6049
29 1 0.0374 -6.5268 -2.1370
30 1 -1.3397 -4.2527 0.0016
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260794265.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:19:45
Heat of formation + Delta-G solvation = 51.077492 kcal
Electronic energy + Delta-G solvation = -14928.569690 eV
Core-core repulsion = 12340.297983 eV
Total energy + Delta-G solvation = -2588.271707 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 223.106 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-39.72980 -38.48338 -35.95326 -33.34219 -30.26997 -29.80240 -28.55201 -27.18991
-24.85767 -21.57823 -21.33370 -20.16167 -19.36512 -17.75154 -16.75907 -15.96272
-15.40498 -14.89310 -14.07241 -13.89778 -13.69132 -13.10738 -12.85161 -12.76808
-12.16363 -12.02635 -11.63690 -11.54670 -11.20213 -11.08266 -10.90290 -10.53832
-10.38619 -10.26983 -9.26048 -8.77308 -8.50373 -8.12331 -6.72299 -6.54413
-4.21893 2.99437 3.06853 3.10272 3.60459 3.79333 4.11959 4.19953
4.29983 4.77881 4.84601 4.91431 5.03576 5.24549 5.36405 5.62351
5.69771 5.82329 5.95079 6.09186 6.22771 6.29787 6.62084 6.74742
6.83699 7.03350 7.30509 7.32138 7.58309 7.98631 8.53806 8.78459
9.38574 9.62307 10.42380
Molecular weight = 223.11amu
Principal moments of inertia in cm(-1)
A = 0.084518 B = 0.005669 C = 0.005535
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 331.209508 B = 4938.131977 C = 5057.701823
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.777 5.777
2 C 0.046 3.954
3 Si 0.935 3.065
4 H -0.266 1.266
5 H -0.277 1.277
6 H -0.267 1.267
7 C -0.321 4.321
8 H 0.117 0.883
9 N -0.142 5.142
10 C -0.077 4.077
11 C -0.072 4.072
12 O -0.300 6.300
13 C 0.090 3.910
14 H 0.070 0.930
15 C -0.121 4.121
16 C 0.038 3.962
17 N -0.669 5.669
18 C 0.019 3.981
19 C -0.109 4.109
20 N -0.245 5.245
21 H 0.274 0.726
22 H 0.151 0.849
23 H 0.086 0.914
24 H 0.076 0.924
25 H 0.040 0.960
26 H 0.083 0.917
27 H 0.334 0.666
28 H 0.044 0.956
29 H 0.090 0.910
30 H 0.148 0.852
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.444 -9.874 -0.039 9.979
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.404 5.404
2 C -0.170 4.170
3 Si 0.759 3.241
4 H -0.191 1.191
5 H -0.202 1.202
6 H -0.191 1.191
7 C -0.453 4.453
8 H 0.135 0.865
9 N 0.086 4.914
10 C -0.223 4.223
11 C -0.128 4.128
12 O -0.212 6.212
13 C 0.031 3.969
14 H 0.088 0.912
15 C -0.159 4.159
16 C -0.091 4.091
17 N -0.299 5.299
18 C -0.111 4.111
19 C -0.282 4.282
20 N -0.080 5.080
21 H 0.085 0.915
22 H 0.168 0.832
23 H 0.105 0.895
24 H 0.094 0.906
25 H 0.059 0.941
26 H 0.101 0.899
27 H 0.149 0.851
28 H 0.062 0.938
29 H 0.109 0.891
30 H 0.165 0.835
Dipole moment (debyes) X Y Z Total
from point charges -1.211 -8.761 -0.081 8.845
hybrid contribution -0.592 0.105 0.118 0.613
sum -1.803 -8.656 0.037 8.842
Atomic orbital electron populations
1.70195 1.06137 1.27991 1.36077 1.25616 0.95708 1.00205 0.95520
0.85886 0.79126 0.79560 0.79532 1.19127 1.20187 1.19143 1.19843
0.91712 0.80387 1.53347 0.86541 1.44482 1.03559 1.03302 1.40054
1.20944 0.97114 0.84415 1.19857 1.18261 0.93426 0.81969 1.19120
1.85909 1.29276 1.14354 1.91711 1.22835 0.87990 0.91762 0.94294
0.91175 1.22580 1.02093 0.92945 0.98254 1.23009 0.97924 0.99083
0.89062 1.63038 1.50744 1.06840 1.09262 1.23244 1.00495 0.88415
0.98916 1.23505 0.96729 0.92858 1.15069 1.78121 0.90766 1.14258
1.24851 0.91520 0.83194 0.89495 0.90566 0.94137 0.89909 0.85053
0.93809 0.89145 0.83462
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.78 -21.67 11.82 55.49 0.66 -21.02 16
2 C 0.05 1.19 5.50 -17.50 -0.10 1.10 16
3 Si 0.94 19.07 29.55 -169.99 -5.02 14.04 16
4 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16
5 H -0.28 -5.57 7.11 56.52 0.40 -5.16 16
6 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16
7 C -0.32 -8.65 10.25 -14.81 -0.15 -8.80 16
8 H 0.12 2.82 7.83 -52.49 -0.41 2.41 16
9 N -0.14 -3.98 3.74 -11.43 -0.04 -4.02 16
10 C -0.08 -1.95 11.49 -16.42 -0.19 -2.14 16
11 C -0.07 -1.75 6.96 -39.70 -0.28 -2.03 16
12 O -0.30 -6.39 9.82 -20.30 -0.20 -6.59 16
13 C 0.09 1.52 3.19 -25.37 -0.08 1.44 16
14 H 0.07 1.19 6.45 -51.93 -0.34 0.85 16
15 C -0.12 -1.64 6.80 -24.87 -0.17 -1.81 16
16 C 0.04 0.44 7.55 -1.90 -0.01 0.42 16
17 N -0.67 -8.76 7.51 -110.08 -0.83 -9.58 16
18 C 0.02 0.29 7.33 -2.75 -0.02 0.27 16
19 C -0.11 -2.72 10.92 -17.07 -0.19 -2.91 16
20 N -0.25 -7.06 10.41 30.78 0.32 -6.74 16
21 H 0.27 7.00 8.31 -40.82 -0.34 6.67 16
22 H 0.15 3.37 8.06 -52.48 -0.42 2.95 16
23 H 0.09 1.25 8.08 -51.93 -0.42 0.83 16
24 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16
25 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16
26 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16
27 H 0.33 3.56 8.92 -39.29 -0.35 3.21 16
28 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16
29 H 0.09 1.60 7.96 -51.93 -0.41 1.19 16
30 H 0.15 3.22 7.03 -52.49 -0.37 2.85 16
LS Contribution 259.36 15.07 3.91 3.91
Total: -1.00 -31.44 259.36 -5.94 -37.38
By element:
Atomic # 1 Polarization: 10.62 SS G_CDS: -3.55 Total: 7.07 kcal
Atomic # 6 Polarization: -13.27 SS G_CDS: -1.18 Total: -14.45 kcal
Atomic # 7 Polarization: -41.47 SS G_CDS: 0.11 Total: -41.36 kcal
Atomic # 8 Polarization: -6.39 SS G_CDS: -0.20 Total: -6.59 kcal
Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.04 kcal
Total LS contribution 3.91 Total: 3.91 kcal
Total: -31.44 -5.94 -37.38 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260794265.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 88.461 kcal
(2) G-P(sol) polarization free energy of solvation -31.445 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.016 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.939 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.384 kcal
(6) G-S(sol) free energy of system = (1) + (5) 51.077 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds