Wall clock time and date at job start Mon Mar 30 2020 03:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31295 * 1 3 3 Si 1.86799 * 119.99663 * 2 1 4 4 H 1.48504 * 109.47212 * 239.99821 * 3 2 1 5 5 H 1.48500 * 109.47395 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47366 * 119.99705 * 3 2 1 7 7 C 1.38983 * 120.00249 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99740 * 180.02562 * 7 2 1 9 9 N 1.37336 * 120.00394 * 0.02562 * 7 2 1 10 10 C 1.36552 * 126.09613 * 179.97438 * 9 7 2 11 11 C 1.35508 * 107.52503 * 179.97438 * 10 9 7 12 12 O 1.36176 * 126.05088 * 180.26094 * 11 10 9 13 13 C 1.42897 * 116.99989 * 179.71629 * 12 11 10 14 14 H 1.08996 * 110.27597 * 329.36733 * 13 12 11 15 15 C 1.54592 * 110.31221 * 207.17198 * 13 12 11 16 16 C 1.54937 * 102.92414 * 219.12719 * 15 13 12 17 17 N 1.48535 * 103.22872 * 37.41240 * 16 15 13 18 18 C 1.47904 * 105.81847 * 320.79435 * 17 16 15 19 19 C 1.40505 * 107.89354 * 0.02562 * 11 10 9 20 20 N 1.30948 * 108.41205 * 0.02562 * 19 11 10 21 21 H 0.96997 * 120.00324 * 359.97438 * 1 2 3 22 22 H 1.08004 * 126.23897 * 0.02562 * 10 9 7 23 23 H 1.09006 * 110.72318 * 337.48083 * 15 13 12 24 24 H 1.08997 * 110.72984 * 100.76560 * 15 13 12 25 25 H 1.09001 * 110.66526 * 278.97416 * 16 15 13 26 26 H 1.09004 * 110.81101 * 155.91633 * 16 15 13 27 27 H 1.00899 * 111.00016 * 200.28096 * 17 16 15 28 28 H 1.08996 * 109.91583 * 265.97969 * 18 17 16 29 29 H 1.08995 * 110.08068 * 144.77041 * 18 17 16 30 30 H 1.07997 * 125.79220 * 180.02562 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2468 1.6178 0.0000 4 1 3.1007 1.6965 -1.2125 5 1 1.2818 2.7465 0.0006 6 1 3.1006 1.6966 1.2125 7 6 2.0079 -1.2036 0.0005 8 1 3.0879 -1.2035 0.0010 9 7 1.3214 -2.3930 0.0005 10 6 1.8748 -3.6414 0.0005 11 6 0.8589 -4.5381 0.0011 12 8 0.9867 -5.8939 0.0063 13 6 -0.2200 -6.6592 0.0122 14 1 -1.0090 -6.1165 0.5328 15 6 0.0191 -8.0331 0.6793 16 6 -0.8181 -8.9957 -0.1999 17 7 -0.6303 -8.4544 -1.5703 18 6 -0.6552 -6.9823 -1.4292 19 6 -0.3496 -3.8214 0.0009 20 7 -0.0715 -2.5418 -0.0004 21 1 -0.4850 0.8400 0.0004 22 1 2.9300 -3.8720 0.0009 23 1 1.0755 -8.2999 0.6451 24 1 -0.3464 -8.0323 1.7062 25 1 -1.8693 -8.9620 0.0864 26 1 -0.4349 -10.0139 -0.1326 27 1 -1.3629 -8.7709 -2.1877 28 1 -1.6642 -6.6095 -1.6049 29 1 0.0374 -6.5268 -2.1370 30 1 -1.3397 -4.2527 0.0016 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260794265.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:45 Heat of formation + Delta-G solvation = 27.870371 kcal Electronic energy + Delta-G solvation = -14929.576026 eV Core-core repulsion = 12340.297983 eV Total energy + Delta-G solvation = -2589.278043 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.60865 -39.89603 -37.42649 -35.28553 -32.28047 -31.05282 -29.96446 -28.80820 -26.83657 -23.04923 -22.71551 -21.78889 -21.14354 -19.54645 -18.04881 -17.57268 -17.23141 -16.31866 -15.78914 -15.54411 -15.01942 -15.01051 -14.48202 -14.16802 -13.58018 -13.23118 -13.18104 -12.91420 -12.84786 -12.79760 -12.45554 -12.11995 -11.82516 -11.62011 -11.11622 -10.75561 -10.16380 -9.52071 -8.65533 -8.48353 -6.25513 1.30023 1.40365 1.56465 1.74931 2.09262 2.25719 2.50842 2.91806 3.06451 3.26960 3.70529 3.77097 4.09395 4.25839 4.30250 4.38310 4.59210 4.69818 4.83417 4.86558 4.90773 5.03408 5.07704 5.15665 5.38259 5.68798 5.74295 6.03549 6.41460 6.63280 6.96551 7.41049 7.60914 8.51451 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.084518 B = 0.005669 C = 0.005535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 331.209508 B = 4938.131977 C = 5057.701823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C -0.003 4.003 3 Si 1.019 2.981 4 H -0.255 1.255 5 H -0.274 1.274 6 H -0.255 1.255 7 C -0.355 4.355 8 H 0.135 0.865 9 N -0.164 5.164 10 C -0.094 4.094 11 C -0.061 4.061 12 O -0.310 6.310 13 C 0.075 3.925 14 H 0.069 0.931 15 C -0.118 4.118 16 C 0.045 3.955 17 N -0.677 5.677 18 C 0.025 3.975 19 C -0.111 4.111 20 N -0.293 5.293 21 H 0.278 0.722 22 H 0.173 0.827 23 H 0.076 0.924 24 H 0.094 0.906 25 H 0.061 0.939 26 H 0.104 0.896 27 H 0.350 0.650 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.197 -10.665 0.141 10.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.215 4.215 3 Si 0.838 3.162 4 H -0.179 1.179 5 H -0.198 1.198 6 H -0.179 1.179 7 C -0.487 4.487 8 H 0.153 0.847 9 N 0.063 4.937 10 C -0.241 4.241 11 C -0.117 4.117 12 O -0.223 6.223 13 C 0.017 3.983 14 H 0.087 0.913 15 C -0.156 4.156 16 C -0.084 4.084 17 N -0.309 5.309 18 C -0.105 4.105 19 C -0.284 4.284 20 N -0.128 5.128 21 H 0.088 0.912 22 H 0.190 0.810 23 H 0.095 0.905 24 H 0.113 0.887 25 H 0.080 0.920 26 H 0.122 0.878 27 H 0.167 0.833 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -0.968 -9.598 0.095 9.647 hybrid contribution -0.707 0.161 0.059 0.728 sum -1.675 -9.437 0.155 9.586 Atomic orbital electron populations 1.70350 1.08247 1.29274 1.37347 1.26822 0.96548 1.04034 0.94049 0.84652 0.77616 0.73740 0.80200 1.17913 1.19841 1.17877 1.20558 0.92927 0.80892 1.54276 0.84716 1.44755 1.03510 1.04311 1.41088 1.21498 0.98594 0.84231 1.19746 1.18319 0.92723 0.83305 1.17361 1.85910 1.31984 1.12827 1.91583 1.23260 0.86543 0.92695 0.95814 0.91253 1.22645 1.02178 0.91178 0.99591 1.23084 0.98821 0.99228 0.87247 1.62978 1.51978 1.05118 1.10795 1.23047 1.00266 0.90147 0.97078 1.23908 0.98215 0.92169 1.14132 1.78018 0.91881 1.16186 1.26676 0.91222 0.81025 0.90483 0.88715 0.92038 0.87807 0.83298 0.92627 0.92017 0.81018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.96 11.82 21.66 0.26 -46.70 16 2 C 0.00 -0.15 5.50 84.95 0.47 0.31 16 3 Si 1.02 38.79 29.55 68.60 2.03 40.82 16 4 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 5 H -0.27 -10.14 7.11 99.48 0.71 -9.44 16 6 H -0.25 -9.13 7.11 99.48 0.71 -8.42 16 7 C -0.36 -19.40 10.25 84.01 0.86 -18.53 16 8 H 0.14 6.52 7.83 -2.91 -0.02 6.49 16 9 N -0.16 -9.38 3.74 -190.08 -0.71 -10.09 16 10 C -0.09 -4.85 11.49 83.33 0.96 -3.89 16 11 C -0.06 -2.99 6.96 22.19 0.15 -2.83 16 12 O -0.31 -13.12 9.82 -95.56 -0.94 -14.05 16 13 C 0.07 2.43 3.19 31.47 0.10 2.53 16 14 H 0.07 2.26 6.45 -2.39 -0.02 2.25 16 15 C -0.12 -2.93 6.80 31.80 0.22 -2.72 16 16 C 0.04 0.87 7.55 86.65 0.65 1.52 16 17 N -0.68 -16.14 7.51 -502.19 -3.77 -19.91 16 18 C 0.02 0.73 7.33 86.45 0.63 1.36 16 19 C -0.11 -5.64 10.92 85.38 0.93 -4.70 16 20 N -0.29 -17.25 10.41 -56.54 -0.59 -17.83 16 21 H 0.28 14.49 8.31 -92.71 -0.77 13.72 16 22 H 0.17 7.73 8.06 -2.91 -0.02 7.71 16 23 H 0.08 2.08 8.08 -2.38 -0.02 2.06 16 24 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.35 6.51 8.92 -89.69 -0.80 5.71 16 28 H 0.06 1.49 8.14 -2.39 -0.02 1.48 16 29 H 0.06 2.19 7.96 -2.39 -0.02 2.17 16 30 H 0.17 7.50 7.03 -2.91 -0.02 7.48 16 Total: -1.00 -69.03 259.36 1.60 -67.42 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: 0.35 Total: 27.30 kcal Atomic # 6 Polarization: -31.93 SS G_CDS: 4.98 Total: -26.95 kcal Atomic # 7 Polarization: -89.73 SS G_CDS: -4.82 Total: -94.54 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -0.94 Total: -14.05 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 2.03 Total: 40.82 kcal Total: -69.03 1.60 -67.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260794265.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.293 kcal (2) G-P(sol) polarization free energy of solvation -69.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds