Wall clock time and date at job start Mon Mar 30 2020 03:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.35972 * 126.22117 * 2 1 4 4 H 0.96997 * 126.07185 * 0.06723 * 3 2 1 5 5 N 1.40069 * 107.85486 * 180.26183 * 3 2 1 6 6 C 1.30862 * 108.36368 * 359.77196 * 5 3 2 7 7 C 1.35705 * 126.22650 * 179.87653 * 2 1 3 8 8 N 1.40796 * 126.06601 * 0.02562 * 7 2 1 9 9 C 1.46493 * 120.00008 * 174.37689 * 8 7 2 10 10 C 1.50701 * 112.99922 * 298.21818 * 9 8 7 11 11 H 1.08005 * 120.00010 * 103.49675 * 10 9 8 12 12 C 1.37879 * 119.99933 * 283.49056 * 10 9 8 13 13 N 1.31521 * 119.99598 * 185.81416 * 12 10 9 14 14 Si 1.86794 * 120.00195 * 6.08936 * 12 10 9 15 15 H 1.48500 * 109.47523 * 274.95693 * 14 12 10 16 16 H 1.48501 * 109.47055 * 34.95820 * 14 12 10 17 17 H 1.48497 * 109.47137 * 154.95509 * 14 12 10 18 18 C 1.54033 * 113.92902 * 70.15278 * 9 8 7 19 19 O 1.44168 * 85.52130 * 91.65829 * 18 9 8 20 20 C 1.44180 * 93.33999 * 24.19539 * 19 18 9 21 21 H 1.09000 * 109.47378 * 270.12044 * 1 2 3 22 22 H 1.08996 * 109.47397 * 30.12280 * 1 2 3 23 23 H 1.09003 * 109.46979 * 150.12004 * 1 2 3 24 24 H 1.07999 * 125.82016 * 179.97438 * 6 5 3 25 25 H 0.97008 * 119.99983 * 354.37705 * 8 7 2 26 26 H 0.97003 * 119.99702 * 180.27441 * 13 12 10 27 27 H 1.09002 * 113.87027 * 205.81423 * 18 9 8 28 28 H 1.09007 * 113.85870 * 337.51208 * 18 9 8 29 29 H 1.08998 * 113.86442 * 221.65860 * 20 19 18 30 30 H 1.08997 * 113.86623 * 89.95296 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3105 1.0969 0.0000 4 1 2.0155 2.0210 0.0009 5 7 3.6398 0.6556 -0.0061 6 6 3.6398 -0.6530 -0.0047 7 6 2.3090 -1.0947 0.0024 8 7 1.8808 -2.4360 0.0047 9 6 2.8608 -3.5180 -0.1172 10 6 3.6247 -3.4770 -1.4155 11 1 4.6412 -3.1122 -1.4328 12 6 3.0261 -3.9053 -2.5814 13 7 3.7268 -3.9776 -3.6921 14 14 1.2183 -4.3754 -2.5851 15 1 1.0740 -5.7909 -2.1599 16 1 0.4767 -3.4978 -1.6443 17 1 0.6670 -4.2112 -3.9541 18 6 3.7544 -3.6944 1.1250 19 8 2.7576 -4.6369 1.5686 20 6 2.2977 -4.9092 0.2295 21 1 -0.3634 0.0022 1.0276 22 1 -0.3634 0.8888 -0.5157 23 1 -0.3633 -0.8911 -0.5120 24 1 4.5155 -1.2851 -0.0087 25 1 0.9368 -2.6436 0.0871 26 1 3.3046 -4.2752 -4.5133 27 1 4.7234 -4.1453 0.9108 28 1 3.8256 -2.8023 1.7473 29 1 1.2136 -4.9806 0.1415 30 1 2.8218 -5.7311 -0.2582 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261127869.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:23 Heat of formation + Delta-G solvation = 77.087239 kcal Electronic energy + Delta-G solvation = -15775.444385 eV Core-core repulsion = 13188.300545 eV Total energy + Delta-G solvation = -2587.143840 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -40.46698 -39.41560 -34.05789 -32.46511 -31.81391 -29.53560 -27.78357 -26.01736 -25.49210 -24.14279 -21.15783 -19.69798 -18.87337 -17.23665 -16.25760 -15.46749 -15.44226 -15.04175 -14.36116 -14.30023 -13.64654 -13.43640 -12.70287 -12.54012 -12.41178 -12.17709 -11.78965 -11.44563 -11.02526 -10.87750 -10.32983 -10.28578 -10.09049 -9.24566 -9.22121 -8.74236 -8.73110 -8.55172 -6.23935 -6.13835 -4.28549 2.52158 3.15475 3.25646 3.28197 3.50055 3.76043 4.27752 4.38081 4.69607 5.21501 5.35323 5.47071 5.51237 5.77447 5.80041 5.99524 6.12170 6.19962 6.23073 6.29144 6.47142 6.62738 6.87871 6.95073 7.15235 7.47733 7.97285 8.19821 8.30240 8.50305 8.78734 8.87821 9.39238 10.87692 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.024330 B = 0.012800 C = 0.011505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.557892 B = 2187.032120 C = 2433.100828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.043 4.043 3 N -0.488 5.488 4 H 0.430 0.570 5 N -0.291 5.291 6 C 0.038 3.962 7 C 0.113 3.887 8 N -0.718 5.718 9 C 0.224 3.776 10 C -0.520 4.520 11 H 0.082 0.918 12 C 0.087 3.913 13 N -0.884 5.884 14 Si 0.875 3.125 15 H -0.276 1.276 16 H -0.257 1.257 17 H -0.292 1.292 18 C 0.029 3.971 19 O -0.394 6.394 20 C 0.025 3.975 21 H 0.062 0.938 22 H 0.059 0.941 23 H 0.071 0.929 24 H 0.180 0.820 25 H 0.379 0.621 26 H 0.266 0.734 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.111 4.354 6.461 9.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.172 4.172 3 N -0.204 5.204 4 H 0.272 0.728 5 N -0.114 5.114 6 C -0.151 4.151 7 C 0.003 3.997 8 N -0.354 5.354 9 C 0.138 3.862 10 C -0.559 4.559 11 H 0.100 0.900 12 C -0.118 4.118 13 N -0.521 5.521 14 Si 0.702 3.298 15 H -0.202 1.202 16 H -0.182 1.182 17 H -0.219 1.219 18 C -0.050 4.050 19 O -0.313 6.313 20 C -0.053 4.053 21 H 0.081 0.919 22 H 0.078 0.922 23 H 0.090 0.910 24 H 0.197 0.803 25 H 0.214 0.786 26 H 0.076 0.924 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.292 5.092 6.499 9.806 hybrid contribution -1.930 -0.569 -0.519 2.078 sum -7.221 4.523 5.981 10.410 Atomic orbital electron populations 1.20066 0.88544 1.02530 1.01597 1.20018 0.93277 0.87149 1.16721 1.45618 1.03490 1.06926 1.64378 0.72790 1.77052 0.97464 1.12819 1.24089 1.23565 0.97317 0.91249 1.03000 1.17346 0.91789 0.85373 1.05150 1.44701 1.07230 1.00198 1.83298 1.20803 0.86795 0.83975 0.94589 1.21061 1.00459 1.44024 0.90338 0.90033 1.24922 0.97574 0.94069 0.95221 1.69914 1.36432 1.45542 1.00169 0.87064 0.86316 0.78911 0.77477 1.20230 1.18165 1.21901 1.24409 0.93068 0.91703 0.95785 1.89491 1.52233 1.63620 1.25929 1.24457 0.98831 0.99340 0.82659 0.91920 0.92202 0.91032 0.80289 0.78571 0.92417 0.90066 0.90648 0.91445 0.89157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.92 10.23 36.01 0.37 -0.56 16 2 C -0.04 -0.75 7.26 -81.66 -0.59 -1.34 16 3 N -0.49 -8.11 7.41 33.72 0.25 -7.86 16 4 H 0.43 5.47 8.96 -182.62 -1.64 3.83 16 5 N -0.29 -5.69 12.69 30.70 0.39 -5.30 16 6 C 0.04 0.78 10.17 -17.22 -0.18 0.61 16 7 C 0.11 2.28 6.56 -83.90 -0.55 1.73 16 8 N -0.72 -14.74 4.40 -53.40 -0.24 -14.97 16 9 C 0.22 4.86 0.16 -131.89 -0.02 4.84 16 10 C -0.52 -13.30 7.96 -34.44 -0.27 -13.58 16 11 H 0.08 2.27 7.84 -52.48 -0.41 1.86 16 12 C 0.09 2.34 5.45 -17.82 -0.10 2.24 16 13 N -0.88 -25.59 13.96 55.43 0.77 -24.81 16 14 Si 0.87 20.10 24.60 -169.99 -4.18 15.92 16 15 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 16 H -0.26 -5.47 5.41 56.52 0.31 -5.17 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 C 0.03 0.57 7.76 37.61 0.29 0.86 16 19 O -0.39 -8.21 12.45 -35.23 -0.44 -8.65 16 20 C 0.02 0.51 6.12 37.61 0.23 0.74 16 21 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.07 1.00 7.69 -51.93 -0.40 0.60 16 24 H 0.18 3.67 6.91 -52.49 -0.36 3.31 16 25 H 0.38 7.34 6.94 -40.82 -0.28 7.06 16 26 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.08 1.56 8.09 -51.93 -0.42 1.14 16 28 H 0.08 1.43 7.65 -51.92 -0.40 1.03 16 29 H 0.07 1.31 6.91 -51.93 -0.36 0.95 16 30 H 0.09 1.88 8.05 -51.93 -0.42 1.47 16 LS Contribution 250.43 15.07 3.77 3.77 Total: -1.00 -29.78 250.43 -5.25 -35.03 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -4.76 Total: 11.33 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -0.82 Total: -4.46 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: 1.18 Total: -52.95 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: -0.44 Total: -8.65 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.18 Total: 15.92 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -29.78 -5.25 -35.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261127869.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.121 kcal (2) G-P(sol) polarization free energy of solvation -29.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds