Wall clock time and date at job start Mon Mar 30 2020 04:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47149 * 2 1 4 4 H 1.08997 * 109.46818 * 305.56298 * 3 2 1 5 5 C 1.50700 * 109.47187 * 65.56106 * 3 2 1 6 6 H 1.07997 * 119.99766 * 27.38725 * 5 3 2 7 7 C 1.37876 * 120.00073 * 207.37931 * 5 3 2 8 8 N 1.31522 * 119.99962 * 353.38662 * 7 5 3 9 9 Si 1.86798 * 119.99994 * 173.38431 * 7 5 3 10 10 H 1.48494 * 109.47457 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47270 * 120.00316 * 9 7 5 12 12 H 1.48510 * 109.46855 * 240.00077 * 9 7 5 13 13 C 1.50696 * 109.47335 * 185.56496 * 3 2 1 14 14 O 1.21258 * 120.00423 * 269.99933 * 13 3 2 15 15 C 1.47125 * 119.99954 * 89.99380 * 13 3 2 16 16 C 1.41180 * 127.27322 * 179.70594 * 15 13 3 17 17 N 1.31079 * 105.74686 * 179.87481 * 16 15 13 18 18 N 1.28500 * 109.13291 * 0.40383 * 17 16 15 19 19 C 1.46497 * 124.40550 * 179.75669 * 18 17 16 20 20 N 1.28584 * 111.18339 * 359.73034 * 18 17 16 21 21 H 1.08995 * 109.47304 * 54.28323 * 1 2 3 22 22 H 1.08999 * 109.47101 * 174.28805 * 1 2 3 23 23 H 1.09007 * 109.46929 * 294.28405 * 1 2 3 24 24 H 1.08995 * 109.47196 * 239.99803 * 2 1 3 25 25 H 1.09006 * 109.47096 * 119.99637 * 2 1 3 26 26 H 0.96998 * 119.99780 * 354.63633 * 8 7 5 27 27 H 1.07993 * 127.12659 * 0.03289 * 16 15 13 28 28 H 1.09002 * 109.47179 * 269.97376 * 19 18 17 29 29 H 1.08996 * 109.47767 * 29.97178 * 19 18 17 30 30 H 1.09006 * 109.47190 * 149.97265 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5976 1.9842 -0.8360 5 6 1.6533 2.1121 1.2935 6 1 1.5150 1.5214 2.1870 7 6 1.4761 3.4787 1.3363 8 7 1.7697 4.2131 0.2854 9 14 0.8190 4.2873 2.8867 10 1 0.5688 3.2491 3.9185 11 1 1.8161 5.2620 3.3975 12 1 -0.4500 4.9938 2.5768 13 6 3.5407 1.4448 -0.1378 14 8 4.2405 1.4118 0.8519 15 6 4.1567 1.4870 -1.4732 16 6 5.5349 1.5006 -1.7789 17 7 5.6087 1.5374 -3.0871 18 7 4.4203 1.5553 -3.5757 19 6 4.1147 1.6020 -5.0076 20 7 3.5345 1.5262 -2.6441 21 1 -0.3634 0.5999 -0.8343 22 1 -0.3633 -1.0226 -0.1023 23 1 -0.3633 0.4227 0.9368 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 2.1833 3.8049 -0.4912 27 1 6.3579 1.4817 -1.0799 28 1 4.0402 2.6408 -5.3296 29 1 4.9085 1.1050 -5.5652 30 1 3.1678 1.0951 -5.1938 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308522399.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:02 Heat of formation + Delta-G solvation = 58.888197 kcal Electronic energy + Delta-G solvation = -15279.376892 eV Core-core repulsion = 12691.443883 eV Total energy + Delta-G solvation = -2587.933009 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.20272 -38.28633 -34.49380 -33.48775 -32.27417 -31.82421 -28.10769 -27.07100 -24.44945 -22.99514 -21.67778 -20.79997 -18.94515 -17.09743 -16.64577 -16.59166 -15.41357 -14.51424 -14.13894 -13.80767 -13.62511 -13.48190 -12.91085 -12.84886 -12.09365 -11.92612 -11.48084 -11.11469 -10.92881 -10.74169 -10.60612 -10.22694 -10.09003 -10.01172 -9.59951 -9.01665 -8.91821 -8.56566 -8.23789 -6.38748 -4.09864 1.73268 2.27353 2.47933 3.46044 3.50441 3.64381 3.81042 4.24676 4.53614 4.82354 4.98508 5.14531 5.22710 5.39313 5.52867 5.99760 6.00645 6.09130 6.18807 6.34535 6.60158 6.71088 6.79998 6.86944 6.98835 7.14396 7.30792 8.05580 8.39831 8.47240 8.69648 8.83172 9.60217 10.99141 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.030329 B = 0.008903 C = 0.008279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.988461 B = 3144.305769 C = 3381.080433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.093 4.093 3 C -0.001 4.001 4 H 0.063 0.937 5 C -0.572 4.572 6 H 0.058 0.942 7 C 0.020 3.980 8 N -0.907 5.907 9 Si 1.074 2.926 10 H -0.287 1.287 11 H -0.288 1.288 12 H -0.286 1.286 13 C 0.438 3.562 14 O -0.448 6.448 15 C -0.059 4.059 16 C 0.015 3.985 17 N -0.304 5.304 18 N -0.157 5.157 19 C 0.108 3.892 20 N -0.234 5.234 21 H 0.046 0.954 22 H 0.033 0.967 23 H 0.064 0.936 24 H 0.035 0.965 25 H 0.051 0.949 26 H 0.268 0.732 27 H 0.201 0.799 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.354 -5.827 -8.652 10.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.131 4.131 3 C -0.020 4.020 4 H 0.081 0.919 5 C -0.609 4.609 6 H 0.076 0.924 7 C -0.184 4.184 8 N -0.542 5.542 9 Si 0.902 3.098 10 H -0.212 1.212 11 H -0.215 1.215 12 H -0.212 1.212 13 C 0.311 3.689 14 O -0.317 6.317 15 C -0.221 4.221 16 C -0.169 4.169 17 N -0.144 5.144 18 N -0.059 5.059 19 C -0.032 4.032 20 N -0.083 5.083 21 H 0.066 0.934 22 H 0.052 0.948 23 H 0.083 0.917 24 H 0.054 0.946 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.218 0.782 28 H 0.108 0.892 29 H 0.119 0.881 30 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.963 -4.352 -8.803 10.015 hybrid contribution 0.938 -1.309 -0.044 1.611 sum 2.901 -5.661 -8.847 10.897 Atomic orbital electron populations 1.21572 0.95716 0.98903 1.02644 1.21233 0.96252 0.96365 0.99288 1.19407 0.87325 0.94695 1.00620 0.91871 1.21779 1.50063 0.94371 0.94707 0.92391 1.25916 0.95139 0.94458 1.02912 1.70747 1.38998 1.39033 1.05464 0.83480 0.76510 0.75394 0.74415 1.21243 1.21460 1.21224 1.23244 0.94116 0.69323 0.82260 1.90370 1.66186 1.36262 1.38839 1.24808 0.92509 1.08716 0.96057 1.24978 0.97876 1.03010 0.90995 1.73812 1.08130 1.20510 1.11980 1.48108 1.00035 1.49168 1.08631 1.22110 1.04150 1.04945 0.72037 1.74568 1.21078 1.15750 0.96883 0.93437 0.94758 0.91673 0.94600 0.92982 0.92095 0.78201 0.89223 0.88122 0.87867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 9.64 37.16 0.36 -2.16 16 2 C -0.09 -2.00 5.37 -26.73 -0.14 -2.14 16 3 C 0.00 -0.02 1.59 -92.92 -0.15 -0.17 16 4 H 0.06 1.68 6.86 -51.93 -0.36 1.32 16 5 C -0.57 -15.94 6.86 -34.44 -0.24 -16.18 16 6 H 0.06 1.63 7.82 -52.49 -0.41 1.22 16 7 C 0.02 0.58 5.45 -17.82 -0.10 0.49 16 8 N -0.91 -27.44 13.56 55.43 0.75 -26.68 16 9 Si 1.07 25.58 29.91 -169.99 -5.08 20.50 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.44 10.82 5.91 -30.71 -0.18 10.64 16 14 O -0.45 -11.93 16.95 5.58 0.09 -11.83 16 15 C -0.06 -1.28 7.12 -82.79 -0.59 -1.87 16 16 C 0.01 0.27 12.05 -16.76 -0.20 0.07 16 17 N -0.30 -5.29 12.00 30.94 0.37 -4.92 16 18 N -0.16 -2.59 4.34 -16.64 -0.07 -2.66 16 19 C 0.11 1.06 11.55 59.85 0.69 1.75 16 20 N -0.23 -4.66 11.86 33.35 0.40 -4.26 16 21 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 22 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 1.32 7.59 -51.92 -0.39 0.93 16 24 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 26 H 0.27 8.13 6.70 -40.82 -0.27 7.86 16 27 H 0.20 3.23 8.06 -52.49 -0.42 2.81 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 269.49 15.07 4.06 4.06 Total: -1.00 -33.68 269.49 -3.64 -37.33 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: -3.61 Total: -1.95 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: -0.55 Total: -9.58 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 1.45 Total: -38.52 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.09 Total: -11.83 kcal Atomic # 14 Polarization: 25.58 SS G_CDS: -5.08 Total: 20.50 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -33.68 -3.64 -37.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308522399.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.214 kcal (2) G-P(sol) polarization free energy of solvation -33.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds