Wall clock time and date at job start Mon Mar 30 2020 04:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47149 * 2 1 4 4 H 1.08997 * 109.46818 * 305.56298 * 3 2 1 5 5 C 1.50700 * 109.47187 * 65.56106 * 3 2 1 6 6 H 1.07997 * 119.99766 * 27.38725 * 5 3 2 7 7 C 1.37876 * 120.00073 * 207.37931 * 5 3 2 8 8 N 1.31522 * 119.99962 * 353.38662 * 7 5 3 9 9 Si 1.86798 * 119.99994 * 173.38431 * 7 5 3 10 10 H 1.48494 * 109.47457 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47270 * 120.00316 * 9 7 5 12 12 H 1.48510 * 109.46855 * 240.00077 * 9 7 5 13 13 C 1.50696 * 109.47335 * 185.56496 * 3 2 1 14 14 O 1.21258 * 120.00423 * 269.99933 * 13 3 2 15 15 C 1.47125 * 119.99954 * 89.99380 * 13 3 2 16 16 C 1.41180 * 127.27322 * 179.70594 * 15 13 3 17 17 N 1.31079 * 105.74686 * 179.87481 * 16 15 13 18 18 N 1.28500 * 109.13291 * 0.40383 * 17 16 15 19 19 C 1.46497 * 124.40550 * 179.75669 * 18 17 16 20 20 N 1.28584 * 111.18339 * 359.73034 * 18 17 16 21 21 H 1.08995 * 109.47304 * 54.28323 * 1 2 3 22 22 H 1.08999 * 109.47101 * 174.28805 * 1 2 3 23 23 H 1.09007 * 109.46929 * 294.28405 * 1 2 3 24 24 H 1.08995 * 109.47196 * 239.99803 * 2 1 3 25 25 H 1.09006 * 109.47096 * 119.99637 * 2 1 3 26 26 H 0.96998 * 119.99780 * 354.63633 * 8 7 5 27 27 H 1.07993 * 127.12659 * 0.03289 * 16 15 13 28 28 H 1.09002 * 109.47179 * 269.97376 * 19 18 17 29 29 H 1.08996 * 109.47767 * 29.97178 * 19 18 17 30 30 H 1.09006 * 109.47190 * 149.97265 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5976 1.9842 -0.8360 5 6 1.6533 2.1121 1.2935 6 1 1.5150 1.5214 2.1870 7 6 1.4761 3.4787 1.3363 8 7 1.7697 4.2131 0.2854 9 14 0.8190 4.2873 2.8867 10 1 0.5688 3.2491 3.9185 11 1 1.8161 5.2620 3.3975 12 1 -0.4500 4.9938 2.5768 13 6 3.5407 1.4448 -0.1378 14 8 4.2405 1.4118 0.8519 15 6 4.1567 1.4870 -1.4732 16 6 5.5349 1.5006 -1.7789 17 7 5.6087 1.5374 -3.0871 18 7 4.4203 1.5553 -3.5757 19 6 4.1147 1.6020 -5.0076 20 7 3.5345 1.5262 -2.6441 21 1 -0.3634 0.5999 -0.8343 22 1 -0.3633 -1.0226 -0.1023 23 1 -0.3633 0.4227 0.9368 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 2.1833 3.8049 -0.4912 27 1 6.3579 1.4817 -1.0799 28 1 4.0402 2.6408 -5.3296 29 1 4.9085 1.1050 -5.5652 30 1 3.1678 1.0951 -5.1938 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308522399.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:01 Heat of formation + Delta-G solvation = 35.523002 kcal Electronic energy + Delta-G solvation = -15280.390083 eV Core-core repulsion = 12691.443883 eV Total energy + Delta-G solvation = -2588.946200 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = -1.20 seconds Orbital eigenvalues (eV) -44.64680 -40.21270 -36.44020 -34.76671 -33.93004 -33.65175 -29.59829 -28.63410 -26.38019 -24.70610 -23.04352 -22.52500 -20.76689 -18.74443 -18.43730 -17.98602 -17.14621 -16.02392 -15.90725 -15.70466 -15.45768 -15.20396 -14.12781 -13.84420 -13.71480 -13.64769 -13.05395 -12.88033 -12.70864 -12.63771 -12.09739 -11.94820 -11.91209 -11.52248 -11.48088 -10.90103 -10.65218 -10.43836 -10.27423 -8.64151 -6.34412 0.08854 0.79728 1.33697 1.53250 1.62035 1.79075 2.01111 2.56360 2.79686 3.10266 3.47731 3.97001 4.24885 4.27791 4.28467 4.37295 4.46174 4.50810 4.64373 4.77925 4.89612 5.00614 5.11356 5.22334 5.39349 5.55255 5.55593 5.96279 6.18654 6.56355 6.71386 7.06737 7.42269 8.74374 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.030329 B = 0.008903 C = 0.008279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.988461 B = 3144.305769 C = 3381.080433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.090 4.090 3 C -0.006 4.006 4 H 0.045 0.955 5 C -0.577 4.577 6 H 0.049 0.951 7 C -0.030 4.030 8 N -0.933 5.933 9 Si 1.115 2.885 10 H -0.270 1.270 11 H -0.288 1.288 12 H -0.273 1.273 13 C 0.438 3.562 14 O -0.481 6.481 15 C -0.098 4.098 16 C 0.013 3.987 17 N -0.295 5.295 18 N -0.137 5.137 19 C 0.087 3.913 20 N -0.243 5.243 21 H 0.043 0.957 22 H 0.070 0.930 23 H 0.049 0.951 24 H 0.052 0.948 25 H 0.047 0.953 26 H 0.255 0.745 27 H 0.219 0.781 28 H 0.109 0.891 29 H 0.133 0.867 30 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.234 -6.443 -9.827 11.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.128 4.128 3 C -0.025 4.025 4 H 0.063 0.937 5 C -0.615 4.615 6 H 0.067 0.933 7 C -0.228 4.228 8 N -0.570 5.570 9 Si 0.937 3.063 10 H -0.194 1.194 11 H -0.214 1.214 12 H -0.198 1.198 13 C 0.314 3.686 14 O -0.353 6.353 15 C -0.257 4.257 16 C -0.169 4.169 17 N -0.136 5.136 18 N -0.042 5.042 19 C -0.050 4.050 20 N -0.094 5.094 21 H 0.063 0.937 22 H 0.089 0.911 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.235 0.765 28 H 0.127 0.873 29 H 0.151 0.849 30 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.838 -4.992 -9.995 11.323 hybrid contribution 0.997 -1.176 0.120 1.546 sum 2.835 -6.168 -9.875 11.983 Atomic orbital electron populations 1.21520 0.94000 1.01072 1.01656 1.21217 0.97759 0.93986 0.99837 1.19408 0.88064 0.96480 0.98587 0.93673 1.22034 1.49413 0.94560 0.95484 0.93307 1.27243 0.95133 0.95575 1.04833 1.70868 1.41003 1.39201 1.05964 0.82971 0.76489 0.75168 0.71703 1.19424 1.21404 1.19796 1.23040 0.93912 0.68233 0.83462 1.90337 1.66585 1.38224 1.40202 1.24224 0.93890 1.12307 0.95254 1.25254 0.97245 1.02520 0.91843 1.73841 1.08356 1.20283 1.11136 1.48819 0.99321 1.45908 1.10165 1.22811 1.06502 1.07065 0.68608 1.74503 1.21978 1.15852 0.97067 0.93735 0.91080 0.93227 0.92884 0.93464 0.93463 0.76451 0.87270 0.84919 0.85926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.67 9.64 71.98 0.69 -3.98 16 2 C -0.09 -3.82 5.37 30.59 0.16 -3.65 16 3 C -0.01 -0.30 1.59 -12.29 -0.02 -0.32 16 4 H 0.05 2.46 6.86 -2.39 -0.02 2.45 16 5 C -0.58 -32.77 6.86 25.60 0.18 -32.59 16 6 H 0.05 2.79 7.82 -2.91 -0.02 2.77 16 7 C -0.03 -1.71 5.45 84.65 0.46 -1.25 16 8 N -0.93 -57.54 13.56 21.45 0.29 -57.25 16 9 Si 1.11 51.58 29.91 68.60 2.05 53.63 16 10 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 13 C 0.44 22.09 5.91 28.02 0.17 22.26 16 14 O -0.48 -26.35 16.95 -2.96 -0.05 -26.40 16 15 C -0.10 -4.24 7.12 42.08 0.30 -3.94 16 16 C 0.01 0.48 12.05 85.53 1.03 1.52 16 17 N -0.30 -9.66 12.00 -56.02 -0.67 -10.34 16 18 N -0.14 -4.20 4.34 -206.54 -0.90 -5.09 16 19 C 0.09 1.41 11.55 127.77 1.48 2.89 16 20 N -0.24 -9.44 11.86 -48.39 -0.57 -10.01 16 21 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 22 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 23 H 0.05 1.98 7.59 -2.38 -0.02 1.96 16 24 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 26 H 0.26 15.96 6.70 -92.71 -0.62 15.34 16 27 H 0.22 6.88 8.06 -2.91 -0.02 6.86 16 28 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.13 1.35 8.14 -2.39 -0.02 1.34 16 30 H 0.12 1.57 8.14 -2.38 -0.02 1.55 16 Total: -1.00 -73.60 269.49 5.88 -67.72 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: 1.28 Total: 6.81 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: 4.45 Total: -19.08 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -1.85 Total: -82.69 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.05 Total: -26.40 kcal Atomic # 14 Polarization: 51.58 SS G_CDS: 2.05 Total: 53.63 kcal Total: -73.60 5.88 -67.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308522399.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.246 kcal (2) G-P(sol) polarization free energy of solvation -73.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -1.20 seconds