Wall clock time and date at job start Mon Mar 30 2020 02:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.45196 * 109.46980 * 245.22634 * 3 2 1 5 5 C 1.34640 * 117.00027 * 180.02562 * 4 3 2 6 6 O 1.21510 * 119.99936 * 0.02562 * 5 4 3 7 7 N 1.34778 * 120.00203 * 179.97438 * 5 4 3 8 8 C 1.47426 * 125.64843 * 0.04544 * 7 5 4 9 9 C 1.54909 * 104.83381 * 204.08968 * 8 7 5 10 10 C 1.55157 * 101.57958 * 322.98989 * 9 8 7 11 11 H 1.09002 * 110.72213 * 277.13898 * 10 9 8 12 12 C 1.50701 * 110.86933 * 153.93352 * 10 9 8 13 13 H 1.08002 * 119.99820 * 2.55305 * 12 10 9 14 14 C 1.37882 * 119.99887 * 182.54395 * 12 10 9 15 15 N 1.31508 * 120.00062 * 0.02562 * 14 12 10 16 16 Si 1.86806 * 119.99695 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47123 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46745 * 120.00531 * 16 14 12 19 19 H 1.48499 * 109.46895 * 240.00473 * 16 14 12 20 20 C 1.47018 * 125.65052 * 179.97438 * 7 5 4 21 21 H 4.39837 * 5.48952 * 179.97438 * 4 1 2 22 22 H 1.08999 * 109.47151 * 125.22774 * 3 2 1 23 23 H 1.09004 * 109.47092 * 5.22431 * 3 2 1 24 24 H 1.08998 * 110.36876 * 322.93285 * 8 7 5 25 25 H 1.09003 * 110.36123 * 85.24967 * 8 7 5 26 26 H 1.09000 * 111.00466 * 204.91585 * 9 8 7 27 27 H 1.08997 * 111.00194 * 81.06198 * 9 8 7 28 28 H 0.96998 * 119.99709 * 179.97438 * 15 14 12 29 29 H 1.08998 * 109.88222 * 59.56497 * 20 7 5 30 30 H 1.09004 * 109.88300 * 298.39863 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1297 0.5745 1.2430 5 6 4.4644 0.6495 1.4029 6 8 5.2048 0.2469 0.5276 7 7 4.9793 1.1721 2.5335 8 6 4.2005 1.6956 3.6706 9 6 5.1508 2.6956 4.3753 10 6 6.5207 1.9830 4.2238 11 1 6.6541 1.2338 5.0043 12 6 7.6501 2.9805 4.2462 13 1 7.4413 4.0292 4.3986 14 6 8.9498 2.5544 4.0724 15 7 9.2039 1.2775 3.8865 16 14 10.3498 3.7909 4.1009 17 1 9.8026 5.1530 4.3252 18 1 11.2901 3.4486 5.1981 19 1 11.0695 3.7537 2.8025 20 6 6.4107 1.3133 2.8378 21 1 -1.0501 0.0001 -0.0002 22 1 3.0090 0.5936 -0.8395 23 1 3.0098 -1.0226 -0.0936 24 1 3.3069 2.2081 3.3144 25 1 3.9298 0.8867 4.3493 26 1 4.8853 2.8126 5.4260 27 1 5.1527 3.6586 3.8649 28 1 10.1182 0.9779 3.7639 29 1 6.8898 1.9392 2.0849 30 1 6.8833 0.3313 2.8619 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397650962.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:30 Heat of formation + Delta-G solvation = -24.166919 kcal Electronic energy + Delta-G solvation = -14833.863604 eV Core-core repulsion = 12210.036304 eV Total energy + Delta-G solvation = -2623.827300 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.02730 -37.64585 -35.84973 -33.47855 -32.97750 -30.66727 -28.14460 -27.62252 -24.91927 -22.71569 -20.31611 -19.52553 -18.62580 -17.45594 -16.66238 -16.32967 -16.19487 -14.83758 -14.53788 -14.27328 -13.60601 -13.02887 -12.49595 -12.45657 -12.12119 -11.70548 -11.52383 -11.02316 -10.98042 -10.83881 -10.64489 -10.55610 -10.09413 -10.04948 -9.91085 -9.35889 -9.11054 -8.55940 -7.96293 -6.14125 -4.18735 1.97256 2.61219 3.14391 3.27221 3.31993 3.35317 3.38307 4.07984 4.36627 4.68086 5.19209 5.25882 5.31425 5.49478 5.67629 5.77632 5.87903 6.11959 6.46297 6.57033 6.69661 6.83290 6.90930 6.96591 7.34368 7.39666 7.63735 7.84623 8.14751 8.25118 8.77308 8.86238 9.47483 10.95941 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.055922 B = 0.005918 C = 0.005591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.578051 B = 4730.142458 C = 5006.840840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.191 4.191 3 C 0.197 3.803 4 O -0.370 6.370 5 C 0.656 3.344 6 O -0.579 6.579 7 N -0.595 5.595 8 C 0.103 3.897 9 C -0.129 4.129 10 C 0.045 3.955 11 H 0.044 0.956 12 C -0.518 4.518 13 H 0.063 0.937 14 C 0.064 3.936 15 N -0.886 5.886 16 Si 0.896 3.104 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.141 3.859 21 H 0.224 0.776 22 H 0.094 0.906 23 H 0.094 0.906 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.264 0.736 29 H 0.064 0.936 30 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.882 -0.967 -3.221 13.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.191 4.191 3 C 0.123 3.877 4 O -0.286 6.286 5 C 0.410 3.590 6 O -0.469 6.469 7 N -0.335 5.335 8 C -0.020 4.020 9 C -0.167 4.167 10 C 0.026 3.974 11 H 0.062 0.938 12 C -0.556 4.556 13 H 0.082 0.918 14 C -0.139 4.139 15 N -0.523 5.523 16 Si 0.724 3.276 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.209 1.209 20 C 0.022 3.978 21 H 0.241 0.759 22 H 0.112 0.888 23 H 0.112 0.888 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.546 -1.275 -3.628 13.122 hybrid contribution 0.641 0.449 -0.171 0.801 sum -11.905 -0.826 -3.799 12.523 Atomic orbital electron populations 1.24944 0.95753 1.00388 0.97613 1.22454 0.93635 1.00846 1.02145 1.19260 0.83667 0.99911 0.84909 1.86252 1.23698 1.77851 1.40761 1.17612 0.79942 0.78621 0.82817 1.90970 1.59482 1.54147 1.42307 1.47811 1.10353 1.60866 1.14464 1.22344 0.94825 0.97018 0.87809 1.22881 0.96817 0.97834 0.99150 1.19786 0.91114 0.95033 0.91510 0.93769 1.21051 0.90394 0.93655 1.50524 0.91847 1.25057 0.99062 0.95302 0.94515 1.69946 1.20448 1.13861 1.48067 0.86468 0.82033 0.81438 0.77706 1.19645 1.20911 1.20897 1.22615 0.73920 1.01313 0.99938 0.75939 0.88791 0.88791 0.91649 0.92071 0.91220 0.91411 0.92628 0.91792 0.91723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 19.25 29.55 0.57 -1.15 16 2 C -0.19 -2.43 13.74 -37.12 -0.51 -2.94 16 3 C 0.20 2.79 5.94 34.37 0.20 2.99 16 4 O -0.37 -6.56 9.71 -40.32 -0.39 -6.95 16 5 C 0.66 13.74 8.62 54.06 0.47 14.21 16 6 O -0.58 -13.57 16.46 -19.28 -0.32 -13.88 16 7 N -0.59 -12.61 3.33 -176.30 -0.59 -13.20 16 8 C 0.10 1.83 6.92 -2.53 -0.02 1.81 16 9 C -0.13 -2.45 6.51 -24.58 -0.16 -2.61 16 10 C 0.04 1.06 2.82 -89.94 -0.25 0.81 16 11 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 12 C -0.52 -13.54 8.39 -34.44 -0.29 -13.83 16 13 H 0.06 1.62 7.78 -52.49 -0.41 1.22 16 14 C 0.06 1.71 5.34 -17.82 -0.10 1.62 16 15 N -0.89 -24.84 12.58 55.43 0.70 -24.14 16 16 Si 0.90 20.71 29.54 -169.99 -5.02 15.68 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 20 C 0.14 3.42 5.61 -3.07 -0.02 3.40 16 21 H 0.22 1.29 7.80 -54.09 -0.42 0.87 16 22 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 23 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 24 H 0.07 1.04 8.04 -51.93 -0.42 0.63 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.07 1.30 8.04 -51.93 -0.42 0.88 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.06 1.69 7.81 -51.93 -0.41 1.28 16 30 H 0.06 1.69 8.07 -51.93 -0.42 1.28 16 LS Contribution 272.65 15.07 4.11 4.11 Total: -1.00 -30.22 272.65 -5.35 -35.58 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: -3.74 Total: -1.50 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -0.10 Total: 4.31 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: 0.11 Total: -37.34 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.71 Total: -20.84 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.22 -5.35 -35.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397650962.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.409 kcal (2) G-P(sol) polarization free energy of solvation -30.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds