Wall clock time and date at job start Mon Mar 30 2020 02:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.45196 * 109.46980 * 245.22634 * 3 2 1 5 5 C 1.34640 * 117.00027 * 180.02562 * 4 3 2 6 6 O 1.21510 * 119.99936 * 0.02562 * 5 4 3 7 7 N 1.34778 * 120.00203 * 179.97438 * 5 4 3 8 8 C 1.47426 * 125.64843 * 0.04544 * 7 5 4 9 9 C 1.54909 * 104.83381 * 204.08968 * 8 7 5 10 10 C 1.55157 * 101.57958 * 322.98989 * 9 8 7 11 11 H 1.09002 * 110.72213 * 277.13898 * 10 9 8 12 12 C 1.50701 * 110.86933 * 153.93352 * 10 9 8 13 13 H 1.08002 * 119.99820 * 2.55305 * 12 10 9 14 14 C 1.37882 * 119.99887 * 182.54395 * 12 10 9 15 15 N 1.31508 * 120.00062 * 0.02562 * 14 12 10 16 16 Si 1.86806 * 119.99695 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47123 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46745 * 120.00531 * 16 14 12 19 19 H 1.48499 * 109.46895 * 240.00473 * 16 14 12 20 20 C 1.47018 * 125.65052 * 179.97438 * 7 5 4 21 21 H 4.39837 * 5.48952 * 179.97438 * 4 1 2 22 22 H 1.08999 * 109.47151 * 125.22774 * 3 2 1 23 23 H 1.09004 * 109.47092 * 5.22431 * 3 2 1 24 24 H 1.08998 * 110.36876 * 322.93285 * 8 7 5 25 25 H 1.09003 * 110.36123 * 85.24967 * 8 7 5 26 26 H 1.09000 * 111.00466 * 204.91585 * 9 8 7 27 27 H 1.08997 * 111.00194 * 81.06198 * 9 8 7 28 28 H 0.96998 * 119.99709 * 179.97438 * 15 14 12 29 29 H 1.08998 * 109.88222 * 59.56497 * 20 7 5 30 30 H 1.09004 * 109.88300 * 298.39863 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1297 0.5745 1.2430 5 6 4.4644 0.6495 1.4029 6 8 5.2048 0.2469 0.5276 7 7 4.9793 1.1721 2.5335 8 6 4.2005 1.6956 3.6706 9 6 5.1508 2.6956 4.3753 10 6 6.5207 1.9830 4.2238 11 1 6.6541 1.2338 5.0043 12 6 7.6501 2.9805 4.2462 13 1 7.4413 4.0292 4.3986 14 6 8.9498 2.5544 4.0724 15 7 9.2039 1.2775 3.8865 16 14 10.3498 3.7909 4.1009 17 1 9.8026 5.1530 4.3252 18 1 11.2901 3.4486 5.1981 19 1 11.0695 3.7537 2.8025 20 6 6.4107 1.3133 2.8378 21 1 -1.0501 0.0001 -0.0002 22 1 3.0090 0.5936 -0.8395 23 1 3.0098 -1.0226 -0.0936 24 1 3.3069 2.2081 3.3144 25 1 3.9298 0.8867 4.3493 26 1 4.8853 2.8126 5.4260 27 1 5.1527 3.6586 3.8649 28 1 10.1182 0.9779 3.7639 29 1 6.8898 1.9392 2.0849 30 1 6.8833 0.3313 2.8619 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397650962.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:30 Heat of formation + Delta-G solvation = -43.011152 kcal Electronic energy + Delta-G solvation = -14834.680752 eV Core-core repulsion = 12210.036304 eV Total energy + Delta-G solvation = -2624.644448 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.61876 -39.26850 -37.44775 -35.03698 -34.35286 -32.42178 -29.85835 -28.83376 -26.83196 -24.37438 -21.90387 -21.30986 -19.63673 -19.02316 -18.50089 -17.85115 -17.76894 -16.56278 -16.23116 -15.57940 -15.05814 -14.48164 -14.32831 -14.15761 -13.67526 -13.46408 -13.18876 -12.83042 -12.50891 -12.38755 -12.32136 -11.91774 -11.67630 -11.59047 -11.15776 -11.13508 -11.03667 -10.60731 -9.71646 -8.18382 -6.29168 0.70910 1.43394 1.46064 1.56946 1.64202 1.75999 1.96204 2.43334 2.99606 3.15297 3.48318 3.94416 4.10222 4.22284 4.26801 4.37661 4.61076 4.67360 4.89459 4.90490 5.10409 5.14321 5.19619 5.24349 5.49988 5.66969 5.84860 6.25653 6.48670 6.50771 6.81684 7.14737 7.40857 8.91592 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.055922 B = 0.005918 C = 0.005591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.578051 B = 4730.142458 C = 5006.840840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.254 4.254 3 C 0.192 3.808 4 O -0.364 6.364 5 C 0.658 3.342 6 O -0.612 6.612 7 N -0.602 5.602 8 C 0.106 3.894 9 C -0.116 4.116 10 C 0.037 3.963 11 H 0.025 0.975 12 C -0.529 4.529 13 H 0.068 0.932 14 C 0.013 3.987 15 N -0.920 5.920 16 Si 0.959 3.041 17 H -0.261 1.261 18 H -0.279 1.279 19 H -0.287 1.287 20 C 0.161 3.839 21 H 0.268 0.732 22 H 0.096 0.904 23 H 0.096 0.904 24 H 0.092 0.908 25 H 0.079 0.921 26 H 0.098 0.902 27 H 0.068 0.932 28 H 0.263 0.737 29 H 0.032 0.968 30 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.196 0.016 -2.853 15.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.254 4.254 3 C 0.119 3.881 4 O -0.278 6.278 5 C 0.413 3.587 6 O -0.505 6.505 7 N -0.342 5.342 8 C -0.016 4.016 9 C -0.154 4.154 10 C 0.017 3.983 11 H 0.043 0.957 12 C -0.568 4.568 13 H 0.086 0.914 14 C -0.187 4.187 15 N -0.559 5.559 16 Si 0.784 3.216 17 H -0.184 1.184 18 H -0.205 1.205 19 H -0.213 1.213 20 C 0.040 3.960 21 H 0.283 0.717 22 H 0.114 0.886 23 H 0.114 0.886 24 H 0.111 0.889 25 H 0.097 0.903 26 H 0.116 0.884 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -14.911 -0.278 -3.248 15.263 hybrid contribution 1.211 0.104 -0.327 1.258 sum -13.700 -0.174 -3.575 14.160 Atomic orbital electron populations 1.25966 0.96434 0.97022 0.94038 1.22413 0.93691 1.03953 1.05338 1.19425 0.85291 0.99918 0.83449 1.86242 1.21169 1.77766 1.42659 1.17637 0.80866 0.77967 0.82214 1.90939 1.60681 1.55389 1.43465 1.47761 1.09595 1.61211 1.15629 1.22537 0.94826 0.97398 0.86806 1.22810 0.93873 0.97509 1.01185 1.19732 0.93492 0.94724 0.90312 0.95661 1.21441 0.91297 0.94313 1.49705 0.91381 1.25859 1.01667 0.96845 0.94349 1.70075 1.20773 1.15672 1.49381 0.85485 0.79029 0.79688 0.77373 1.18442 1.20465 1.21298 1.22080 0.75643 0.98806 0.99517 0.71654 0.88572 0.88577 0.88936 0.90253 0.88394 0.91370 0.92804 0.94923 0.94937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.95 19.25 74.32 1.43 -0.52 16 2 C -0.25 -5.97 13.74 31.13 0.43 -5.55 16 3 C 0.19 5.39 5.94 70.18 0.42 5.81 16 4 O -0.36 -12.61 9.71 -55.49 -0.54 -13.15 16 5 C 0.66 27.75 8.62 129.79 1.12 28.87 16 6 O -0.61 -29.52 16.46 19.81 0.33 -29.19 16 7 N -0.60 -25.53 3.33 -942.10 -3.13 -28.67 16 8 C 0.11 3.53 6.92 86.85 0.60 4.13 16 9 C -0.12 -4.19 6.51 31.99 0.21 -3.98 16 10 C 0.04 1.75 2.82 -10.35 -0.03 1.73 16 11 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 12 C -0.53 -27.80 8.39 25.60 0.21 -27.59 16 13 H 0.07 3.43 7.78 -2.91 -0.02 3.41 16 14 C 0.01 0.68 5.34 84.66 0.45 1.13 16 15 N -0.92 -53.13 12.58 21.45 0.27 -52.86 16 16 Si 0.96 42.74 29.54 68.60 2.03 44.76 16 17 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 18 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 19 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 20 C 0.16 8.04 5.61 86.73 0.49 8.52 16 21 H 0.27 1.57 7.80 -4.41 -0.03 1.53 16 22 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 23 H 0.10 2.58 8.14 -2.38 -0.02 2.56 16 24 H 0.09 2.64 8.04 -2.39 -0.02 2.62 16 25 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 26 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 27 H 0.07 2.46 8.04 -2.39 -0.02 2.45 16 28 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 29 H 0.03 1.80 7.81 -2.39 -0.02 1.78 16 30 H 0.03 1.80 8.07 -2.38 -0.02 1.78 16 Total: -1.00 -66.85 272.65 5.40 -61.45 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: 1.12 Total: 5.10 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: 5.33 Total: 12.56 kcal Atomic # 7 Polarization: -78.66 SS G_CDS: -2.86 Total: -81.52 kcal Atomic # 8 Polarization: -42.13 SS G_CDS: -0.21 Total: -42.34 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Total: -66.85 5.40 -61.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397650962.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.439 kcal (2) G-P(sol) polarization free energy of solvation -66.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds