Wall clock time and date at job start Mon Mar 30 2020 03:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47279 * 13.94668 * 3 2 1 5 5 C 1.37096 * 120.00016 * 264.27854 * 4 3 2 6 6 H 1.07999 * 119.99801 * 197.69420 * 5 4 3 7 7 C 1.38951 * 119.99894 * 17.68563 * 5 4 3 8 8 N 1.31410 * 120.00124 * 21.50885 * 7 5 4 9 9 Si 1.86800 * 119.99812 * 201.50976 * 7 5 4 10 10 H 1.48498 * 109.47344 * 60.00007 * 9 7 5 11 11 H 1.48502 * 109.47360 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47132 * 299.99958 * 9 7 5 13 13 C 1.34775 * 120.00237 * 84.27026 * 4 3 2 14 14 O 1.21294 * 120.00425 * 179.97438 * 13 4 3 15 15 C 1.50698 * 119.99762 * 0.02562 * 13 4 3 16 16 H 1.08996 * 109.47237 * 319.99725 * 15 13 4 17 17 N 1.46904 * 109.47111 * 199.99570 * 15 13 4 18 18 C 1.53009 * 109.47329 * 79.99616 * 15 13 4 19 19 C 1.53001 * 117.51558 * 116.28543 * 18 15 13 20 20 C 1.52995 * 59.99986 * 107.48274 * 19 18 15 21 21 H 1.08995 * 109.46930 * 253.94320 * 3 2 1 22 22 H 1.08998 * 109.47123 * 133.94580 * 3 2 1 23 23 H 0.97000 * 120.00072 * 179.97438 * 8 7 5 24 24 H 1.00905 * 111.00089 * 176.04547 * 17 15 13 25 25 H 1.00895 * 110.99958 * 299.99808 * 17 15 13 26 26 H 1.08999 * 115.54660 * 330.58701 * 18 15 13 27 27 H 1.09009 * 117.49392 * 214.97412 * 19 18 15 28 28 H 1.08997 * 117.50380 * 359.97438 * 19 18 15 29 29 H 1.09003 * 117.49445 * 252.50685 * 20 19 18 30 30 H 1.08997 * 117.49977 * 107.48953 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.3396 -0.3329 5 6 3.4375 -2.2131 0.6674 6 1 4.0539 -3.0722 0.4474 7 6 2.9897 -1.9930 1.9642 8 7 1.9351 -1.2381 2.1760 9 14 3.8868 -2.7702 3.4066 10 1 5.2941 -2.2964 3.4278 11 1 3.2150 -2.3843 4.6735 12 1 3.8643 -4.2483 3.2653 13 6 3.2120 -1.7140 -1.6225 14 8 3.6173 -2.8235 -1.8981 15 6 2.8381 -0.7537 -2.7220 16 1 1.9380 -0.2086 -2.4379 17 7 2.5869 -1.5018 -3.9611 18 6 3.9836 0.2355 -2.9468 19 6 4.6835 0.2093 -4.3071 20 6 3.7521 1.3688 -3.9482 21 1 2.9712 0.2851 0.9875 22 1 2.9711 0.7140 -0.7399 23 1 1.6223 -1.0847 3.0812 24 1 2.2719 -0.8874 -4.6970 25 1 3.4071 -2.0159 -4.2457 26 1 4.5941 0.4546 -2.0708 27 1 5.7545 0.4113 -4.3260 28 1 4.3283 -0.5130 -5.0421 29 1 2.7839 1.4096 -4.4472 30 1 4.2103 2.3337 -3.7310 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399289394.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:40 Heat of formation + Delta-G solvation = 35.937335 kcal Electronic energy + Delta-G solvation = -15491.684593 eV Core-core repulsion = 12902.756359 eV Total energy + Delta-G solvation = -2588.928233 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 3.74 seconds Orbital eigenvalues (eV) -39.44243 -37.31382 -35.72572 -34.31711 -32.33938 -31.78278 -27.62529 -26.76712 -24.29928 -22.36992 -20.79299 -18.82226 -17.90890 -17.02017 -16.22061 -15.75282 -15.15229 -14.75159 -14.14243 -14.03264 -13.27941 -12.99437 -12.85854 -12.19463 -12.01062 -11.76741 -11.57440 -11.38100 -11.20510 -11.11831 -10.57570 -10.45673 -10.41294 -10.27770 -10.00550 -9.22840 -8.70531 -8.23781 -8.01144 -6.48028 -3.97346 3.13338 3.22841 3.25109 3.55258 3.72364 3.85944 4.01985 4.13892 4.65075 4.78049 4.90382 4.93688 5.04727 5.17309 5.23995 5.52409 5.61184 5.70331 5.88637 5.97714 6.08984 6.09981 6.22574 6.50903 7.35386 7.49219 7.76311 7.94646 8.31238 8.76712 9.02798 9.22107 9.77471 10.58162 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.032269 B = 0.009613 C = 0.008565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.485316 B = 2912.130770 C = 3268.232959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C 0.244 3.756 3 C 0.220 3.780 4 N -0.443 5.443 5 C -0.314 4.314 6 H 0.108 0.892 7 C 0.031 3.969 8 N -0.878 5.878 9 Si 0.927 3.073 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.470 3.530 14 O -0.562 6.562 15 C 0.108 3.892 16 H 0.093 0.907 17 N -0.823 5.823 18 C -0.181 4.181 19 C -0.181 4.181 20 C -0.179 4.179 21 H 0.127 0.873 22 H 0.084 0.916 23 H 0.273 0.727 24 H 0.336 0.664 25 H 0.350 0.650 26 H 0.113 0.887 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.679 7.406 -6.952 11.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.151 5.151 2 C -0.074 4.074 3 C 0.092 3.908 4 N -0.164 5.164 5 C -0.441 4.441 6 H 0.125 0.875 7 C -0.172 4.172 8 N -0.517 5.517 9 Si 0.754 3.246 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.257 3.743 14 O -0.443 6.443 15 C -0.008 4.008 16 H 0.111 0.889 17 N -0.355 5.355 18 C -0.202 4.202 19 C -0.218 4.218 20 C -0.216 4.216 21 H 0.144 0.856 22 H 0.101 0.899 23 H 0.084 0.916 24 H 0.149 0.851 25 H 0.166 0.834 26 H 0.131 0.869 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.546 6.474 -6.486 9.826 hybrid contribution 1.384 0.325 0.595 1.541 sum 4.930 6.798 -5.892 10.258 Atomic orbital electron populations 1.80892 1.13593 1.08974 1.11643 1.29313 0.95387 0.92103 0.90586 1.18796 0.81659 0.86365 1.03951 1.43596 1.56915 1.11263 1.04657 1.19665 1.30016 1.08441 0.85950 0.87463 1.25266 0.95005 0.97715 0.99223 1.69859 1.19775 1.39296 1.22723 0.85969 0.79431 0.79633 0.79582 1.19748 1.21030 1.19831 1.19809 0.83568 0.87906 0.82991 1.90523 1.49505 1.22009 1.82264 1.20921 0.96152 0.91977 0.91751 0.88928 1.58491 1.41236 1.30372 1.05416 1.23260 1.01802 1.00423 0.94668 1.23029 0.98717 1.01501 0.98595 1.22988 1.01073 0.93821 1.03738 0.85551 0.89854 0.91599 0.85108 0.83365 0.86874 0.88682 0.88754 0.88849 0.88620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.41 18.54 42.15 0.78 -10.63 16 2 C 0.24 5.50 12.60 -20.76 -0.26 5.24 16 3 C 0.22 4.40 4.80 -6.83 -0.03 4.37 16 4 N -0.44 -10.41 2.60 -117.94 -0.31 -10.71 16 5 C -0.31 -8.15 9.32 -14.93 -0.14 -8.29 16 6 H 0.11 2.94 7.39 -52.49 -0.39 2.55 16 7 C 0.03 0.78 4.86 -17.47 -0.08 0.70 16 8 N -0.88 -22.33 9.48 55.50 0.53 -21.81 16 9 Si 0.93 19.74 29.60 -169.99 -5.03 14.71 16 10 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 11 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 12 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 13 C 0.47 10.80 6.77 -10.99 -0.07 10.72 16 14 O -0.56 -14.95 15.90 5.55 0.09 -14.86 16 15 C 0.11 1.90 2.68 -68.86 -0.18 1.71 16 16 H 0.09 1.66 6.47 -51.93 -0.34 1.33 16 17 N -0.82 -13.46 8.26 -5.65 -0.05 -13.51 16 18 C -0.18 -2.53 4.70 -90.62 -0.43 -2.95 16 19 C -0.18 -2.10 9.55 -26.73 -0.26 -2.36 16 20 C -0.18 -1.94 10.00 -26.73 -0.27 -2.21 16 21 H 0.13 2.57 6.47 -51.93 -0.34 2.23 16 22 H 0.08 1.30 5.63 -51.93 -0.29 1.01 16 23 H 0.27 6.75 8.31 -40.82 -0.34 6.42 16 24 H 0.34 4.35 8.11 -39.29 -0.32 4.03 16 25 H 0.35 5.71 7.34 -39.29 -0.29 5.42 16 26 H 0.11 1.62 7.54 -51.93 -0.39 1.22 16 27 H 0.09 1.01 8.14 -51.92 -0.42 0.59 16 28 H 0.09 1.04 6.13 -51.93 -0.32 0.72 16 29 H 0.09 0.95 8.03 -51.93 -0.42 0.54 16 30 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 258.68 15.07 3.90 3.90 Total: -1.00 -30.97 258.68 -4.88 -35.86 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -3.07 Total: 10.13 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: -1.73 Total: 6.92 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: 0.95 Total: -56.66 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: 0.09 Total: -14.86 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.03 Total: 14.71 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.97 -4.88 -35.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399289394.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.795 kcal (2) G-P(sol) polarization free energy of solvation -30.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.74 seconds