Wall clock time and date at job start Mon Mar 30 2020 03:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47279 * 13.94668 * 3 2 1 5 5 C 1.37096 * 120.00016 * 264.27854 * 4 3 2 6 6 H 1.07999 * 119.99801 * 197.69420 * 5 4 3 7 7 C 1.38951 * 119.99894 * 17.68563 * 5 4 3 8 8 N 1.31410 * 120.00124 * 21.50885 * 7 5 4 9 9 Si 1.86800 * 119.99812 * 201.50976 * 7 5 4 10 10 H 1.48498 * 109.47344 * 60.00007 * 9 7 5 11 11 H 1.48502 * 109.47360 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47132 * 299.99958 * 9 7 5 13 13 C 1.34775 * 120.00237 * 84.27026 * 4 3 2 14 14 O 1.21294 * 120.00425 * 179.97438 * 13 4 3 15 15 C 1.50698 * 119.99762 * 0.02562 * 13 4 3 16 16 H 1.08996 * 109.47237 * 319.99725 * 15 13 4 17 17 N 1.46904 * 109.47111 * 199.99570 * 15 13 4 18 18 C 1.53009 * 109.47329 * 79.99616 * 15 13 4 19 19 C 1.53001 * 117.51558 * 116.28543 * 18 15 13 20 20 C 1.52995 * 59.99986 * 107.48274 * 19 18 15 21 21 H 1.08995 * 109.46930 * 253.94320 * 3 2 1 22 22 H 1.08998 * 109.47123 * 133.94580 * 3 2 1 23 23 H 0.97000 * 120.00072 * 179.97438 * 8 7 5 24 24 H 1.00905 * 111.00089 * 176.04547 * 17 15 13 25 25 H 1.00895 * 110.99958 * 299.99808 * 17 15 13 26 26 H 1.08999 * 115.54660 * 330.58701 * 18 15 13 27 27 H 1.09009 * 117.49392 * 214.97412 * 19 18 15 28 28 H 1.08997 * 117.50380 * 359.97438 * 19 18 15 29 29 H 1.09003 * 117.49445 * 252.50685 * 20 19 18 30 30 H 1.08997 * 117.49977 * 107.48953 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.3396 -0.3329 5 6 3.4375 -2.2131 0.6674 6 1 4.0539 -3.0722 0.4474 7 6 2.9897 -1.9930 1.9642 8 7 1.9351 -1.2381 2.1760 9 14 3.8868 -2.7702 3.4066 10 1 5.2941 -2.2964 3.4278 11 1 3.2150 -2.3843 4.6735 12 1 3.8643 -4.2483 3.2653 13 6 3.2120 -1.7140 -1.6225 14 8 3.6173 -2.8235 -1.8981 15 6 2.8381 -0.7537 -2.7220 16 1 1.9380 -0.2086 -2.4379 17 7 2.5869 -1.5018 -3.9611 18 6 3.9836 0.2355 -2.9468 19 6 4.6835 0.2093 -4.3071 20 6 3.7521 1.3688 -3.9482 21 1 2.9712 0.2851 0.9875 22 1 2.9711 0.7140 -0.7399 23 1 1.6223 -1.0847 3.0812 24 1 2.2719 -0.8874 -4.6970 25 1 3.4071 -2.0159 -4.2457 26 1 4.5941 0.4546 -2.0708 27 1 5.7545 0.4113 -4.3260 28 1 4.3283 -0.5130 -5.0421 29 1 2.7839 1.4096 -4.4472 30 1 4.2103 2.3337 -3.7310 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399289394.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:37 Heat of formation + Delta-G solvation = 13.867111 kcal Electronic energy + Delta-G solvation = -15492.641629 eV Core-core repulsion = 12902.756359 eV Total energy + Delta-G solvation = -2589.885270 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.02242 -38.62017 -37.54853 -36.17522 -33.82632 -33.47319 -29.35734 -28.30896 -26.02558 -23.23228 -22.15506 -20.34029 -19.76699 -18.63384 -17.91697 -16.91694 -16.74054 -16.23580 -15.67669 -15.60764 -14.95097 -14.74458 -14.36502 -13.80546 -13.67146 -13.41951 -13.12020 -12.88142 -12.70616 -12.35336 -12.32507 -12.18324 -12.10848 -11.43302 -11.11347 -11.06115 -10.33242 -9.92934 -9.61078 -8.39962 -5.96120 1.40952 1.47884 1.57210 1.79895 2.04722 2.22535 2.34943 2.81443 2.99599 3.11902 3.53177 3.68636 3.82916 3.92833 4.00535 4.23605 4.47036 4.56400 4.60796 4.80142 4.86448 5.05163 5.19456 5.27946 5.48522 5.95874 6.17965 6.41560 6.62140 6.98031 7.12626 7.35658 7.93896 8.63799 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.032269 B = 0.009613 C = 0.008565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.485316 B = 2912.130770 C = 3268.232959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C 0.256 3.744 3 C 0.223 3.777 4 N -0.454 5.454 5 C -0.344 4.344 6 H 0.081 0.919 7 C 0.005 3.995 8 N -0.893 5.893 9 Si 0.987 3.013 10 H -0.259 1.259 11 H -0.278 1.278 12 H -0.284 1.284 13 C 0.459 3.541 14 O -0.609 6.609 15 C 0.121 3.879 16 H 0.090 0.910 17 N -0.835 5.835 18 C -0.207 4.207 19 C -0.177 4.177 20 C -0.151 4.151 21 H 0.125 0.875 22 H 0.132 0.868 23 H 0.275 0.725 24 H 0.356 0.644 25 H 0.351 0.649 26 H 0.109 0.891 27 H 0.106 0.894 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.361 9.014 -7.505 13.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.185 5.185 2 C -0.062 4.062 3 C 0.097 3.903 4 N -0.174 5.174 5 C -0.471 4.471 6 H 0.099 0.901 7 C -0.197 4.197 8 N -0.532 5.532 9 Si 0.812 3.188 10 H -0.183 1.183 11 H -0.203 1.203 12 H -0.210 1.210 13 C 0.249 3.751 14 O -0.493 6.493 15 C 0.006 3.994 16 H 0.108 0.892 17 N -0.369 5.369 18 C -0.227 4.227 19 C -0.214 4.214 20 C -0.188 4.188 21 H 0.143 0.857 22 H 0.149 0.851 23 H 0.085 0.915 24 H 0.172 0.828 25 H 0.166 0.834 26 H 0.127 0.873 27 H 0.124 0.876 28 H 0.117 0.883 29 H 0.122 0.878 30 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 4.218 8.126 -7.053 11.558 hybrid contribution 1.159 -0.215 0.725 1.384 sum 5.377 7.911 -6.329 11.470 Atomic orbital electron populations 1.80888 1.14677 1.10041 1.12942 1.29780 0.95859 0.91077 0.89491 1.19075 0.80144 0.85674 1.05441 1.43754 1.56850 1.12174 1.04655 1.19587 1.31035 1.09005 0.87457 0.90064 1.25905 0.95159 0.97954 1.00707 1.69939 1.20209 1.39870 1.23164 0.85078 0.79032 0.77998 0.76732 1.18334 1.20347 1.20967 1.20842 0.82063 0.88280 0.83930 1.90481 1.51361 1.24289 1.83139 1.20655 0.97321 0.91216 0.90230 0.89200 1.58417 1.41549 1.31206 1.05758 1.23046 1.01581 1.02043 0.96076 1.23151 0.99636 1.02012 0.96603 1.23110 1.01402 0.93743 1.00550 0.85726 0.85101 0.91503 0.82785 0.83373 0.87289 0.87578 0.88344 0.87833 0.86515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -24.25 18.54 20.01 0.37 -23.87 16 2 C 0.26 11.32 12.60 89.44 1.13 12.45 16 3 C 0.22 8.72 4.80 84.57 0.41 9.12 16 4 N -0.45 -21.42 2.60 -645.43 -1.68 -23.10 16 5 C -0.34 -18.17 9.32 84.04 0.78 -17.38 16 6 H 0.08 4.64 7.39 -2.91 -0.02 4.62 16 7 C 0.00 0.24 4.86 84.93 0.41 0.65 16 8 N -0.89 -45.16 9.48 21.66 0.21 -44.95 16 9 Si 0.99 40.36 29.60 68.60 2.03 42.40 16 10 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 11 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 12 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 13 C 0.46 21.27 6.77 87.66 0.59 21.86 16 14 O -0.61 -33.23 15.90 -3.07 -0.05 -33.28 16 15 C 0.12 4.12 2.68 44.17 0.12 4.24 16 16 H 0.09 3.08 6.47 -2.39 -0.02 3.07 16 17 N -0.83 -26.27 8.26 -171.79 -1.42 -27.69 16 18 C -0.21 -5.29 4.70 -10.79 -0.05 -5.34 16 19 C -0.18 -3.57 9.55 30.59 0.29 -3.28 16 20 C -0.15 -2.68 10.00 30.59 0.31 -2.37 16 21 H 0.13 4.95 6.47 -2.39 -0.02 4.94 16 22 H 0.13 3.81 5.63 -2.39 -0.01 3.80 16 23 H 0.27 13.40 8.31 -92.71 -0.77 12.63 16 24 H 0.36 8.43 8.11 -89.69 -0.73 7.70 16 25 H 0.35 11.13 7.34 -89.70 -0.66 10.47 16 26 H 0.11 2.89 7.54 -2.39 -0.02 2.87 16 27 H 0.11 1.92 8.14 -2.38 -0.02 1.91 16 28 H 0.10 1.91 6.13 -2.39 -0.01 1.90 16 29 H 0.10 1.67 8.03 -2.39 -0.02 1.65 16 30 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -67.59 258.68 3.26 -64.34 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: -0.19 Total: 26.22 kcal Atomic # 6 Polarization: 15.95 SS G_CDS: 3.99 Total: 19.94 kcal Atomic # 7 Polarization: -117.09 SS G_CDS: -2.52 Total: -119.61 kcal Atomic # 8 Polarization: -33.23 SS G_CDS: -0.05 Total: -33.28 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.40 kcal Total: -67.59 3.26 -64.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399289394.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.203 kcal (2) G-P(sol) polarization free energy of solvation -67.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds