Wall clock time and date at job start Mon Mar 30 2020 02:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.47197 * 2 1 4 4 C 1.35740 * 117.00050 * 179.97438 * 3 2 1 5 5 C 1.38812 * 119.80641 * 359.97438 * 4 3 2 6 6 C 1.38169 * 120.19385 * 180.02562 * 5 4 3 7 7 O 1.35696 * 120.10656 * 179.97438 * 6 5 4 8 8 C 1.41477 * 119.78939 * 359.97438 * 6 5 4 9 9 C 1.40986 * 120.18868 * 180.02562 * 8 6 5 10 10 H 1.08000 * 119.99594 * 334.50577 * 9 8 6 11 11 C 1.39824 * 119.99968 * 154.51366 * 9 8 6 12 12 N 1.30950 * 119.99975 * 342.67489 * 11 9 8 13 13 Si 1.86798 * 120.00093 * 162.67929 * 11 9 8 14 14 H 1.48505 * 109.46882 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47048 * 119.99368 * 13 11 9 16 16 H 1.48497 * 109.47247 * 239.99799 * 13 11 9 17 17 C 1.40760 * 119.62031 * 359.97438 * 8 6 5 18 18 C 1.37812 * 119.80486 * 359.74853 * 17 8 6 19 19 N 1.39979 * 119.89756 * 180.24891 * 18 17 8 20 20 H 1.09001 * 109.47716 * 300.00136 * 1 2 3 21 21 H 1.09003 * 109.46750 * 60.00781 * 1 2 3 22 22 H 1.09001 * 109.47355 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46750 * 119.99219 * 2 1 3 24 24 H 1.08997 * 109.47447 * 239.99160 * 2 1 3 25 25 H 1.08002 * 119.90906 * 0.02562 * 5 4 3 26 26 H 0.96698 * 114.00016 * 85.70857 * 7 6 5 27 27 H 0.96996 * 120.00125 * 180.02562 * 12 11 9 28 28 H 1.07997 * 120.09670 * 180.02562 * 17 8 6 29 29 H 0.97004 * 120.00050 * 180.28017 * 19 18 17 30 30 H 0.96999 * 120.00097 * 0.27193 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3520 1.5251 0.0005 5 6 4.1939 0.4214 0.0016 6 6 5.5649 0.5932 0.0027 7 8 6.3862 -0.4870 0.0042 8 6 6.1096 1.8988 0.0022 9 6 7.5073 2.0839 0.0027 10 1 8.1532 1.3180 0.4061 11 6 8.0572 3.2589 -0.5188 12 7 7.3404 4.0261 -1.3013 13 14 9.8143 3.7343 -0.0992 14 1 10.4043 2.7075 0.7970 15 1 10.6148 3.8217 -1.3470 16 1 9.8205 5.0515 0.5863 17 6 5.2483 3.0121 0.0000 18 6 3.8833 2.8221 -0.0068 19 7 3.0249 3.9277 -0.0143 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5137 0.8901 24 1 1.8934 -0.5139 -0.8899 25 1 3.7761 -0.5745 0.0016 26 1 6.5724 -0.8408 -0.8762 27 1 7.7220 4.8411 -1.6634 28 1 5.6558 4.0122 -0.0008 29 1 2.0639 3.7957 -0.0150 30 1 3.3911 4.8260 -0.0186 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575716491.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:20 Heat of formation + Delta-G solvation = -91.600854 kcal Electronic energy + Delta-G solvation = -15113.166313 eV Core-core repulsion = 12486.414858 eV Total energy + Delta-G solvation = -2626.751455 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.66744 -38.81326 -37.16834 -35.65718 -33.78183 -32.36087 -30.78865 -28.55208 -26.55804 -24.58913 -22.41432 -22.14402 -19.41302 -19.10477 -17.83990 -17.50962 -16.96440 -16.74461 -16.34631 -15.55785 -15.06812 -14.68545 -14.31979 -14.03223 -13.88295 -13.33713 -13.24288 -12.90116 -12.66805 -12.53382 -12.27696 -11.85660 -11.75849 -11.41591 -11.18184 -10.91384 -10.55290 -9.08365 -8.64772 -7.83348 -6.20971 0.98730 1.02411 1.40652 1.53068 1.56039 2.24585 2.66795 2.74020 3.37136 3.59185 4.06115 4.15342 4.23402 4.38770 4.48329 4.79530 5.00320 5.02309 5.15166 5.21336 5.30127 5.44106 5.47565 5.75872 5.94712 6.19372 6.49019 6.66318 6.88244 6.96867 7.08232 7.34500 7.47055 8.36920 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.042610 B = 0.008004 C = 0.006890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.961235 B = 3497.377651 C = 4062.636400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.052 3.948 3 O -0.335 6.335 4 C -0.051 4.051 5 C -0.157 4.157 6 C -0.057 4.057 7 O -0.501 6.501 8 C 0.076 3.924 9 C -0.484 4.484 10 H 0.070 0.930 11 C 0.037 3.963 12 N -0.822 5.822 13 Si 0.980 3.020 14 H -0.264 1.264 15 H -0.265 1.265 16 H -0.263 1.263 17 C -0.221 4.221 18 C 0.199 3.801 19 N -0.872 5.872 20 H 0.063 0.937 21 H 0.063 0.937 22 H 0.097 0.903 23 H 0.049 0.951 24 H 0.050 0.950 25 H 0.124 0.876 26 H 0.370 0.630 27 H 0.287 0.713 28 H 0.116 0.884 29 H 0.399 0.601 30 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.240 -2.197 0.156 7.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.024 4.024 3 O -0.251 6.251 4 C -0.098 4.098 5 C -0.177 4.177 6 C -0.103 4.103 7 O -0.309 6.309 8 C 0.073 3.927 9 C -0.513 4.513 10 H 0.089 0.911 11 C -0.177 4.177 12 N -0.448 5.448 13 Si 0.801 3.199 14 H -0.188 1.188 15 H -0.189 1.189 16 H -0.188 1.188 17 C -0.246 4.246 18 C 0.096 3.904 19 N -0.415 5.415 20 H 0.082 0.918 21 H 0.082 0.918 22 H 0.116 0.884 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.142 0.858 26 H 0.223 0.777 27 H 0.098 0.902 28 H 0.134 0.866 29 H 0.228 0.772 30 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -7.365 -1.830 0.627 7.614 hybrid contribution 0.778 0.158 -0.532 0.956 sum -6.587 -1.672 0.095 6.796 Atomic orbital electron populations 1.21742 0.90980 1.03880 1.03066 1.22763 0.96837 0.82283 1.00474 1.85727 1.18485 1.29309 1.91606 1.17909 0.82187 0.91889 1.17818 1.20898 0.93006 0.97291 1.06496 1.18291 0.87909 0.86371 1.17774 1.84688 1.68410 1.44831 1.32949 1.17947 0.94392 0.90506 0.89886 1.19521 0.92372 1.02964 1.36465 0.91148 1.26693 1.04301 0.94848 0.91895 1.69935 1.39990 1.12339 1.22558 0.85190 0.76667 0.78863 0.79132 1.18783 1.18928 1.18784 1.20433 0.89466 0.99125 1.15608 1.17179 0.90004 0.85466 0.97719 1.42051 1.07411 1.05047 1.87018 0.91777 0.91790 0.88395 0.93263 0.93167 0.85786 0.77684 0.90233 0.86628 0.77244 0.77528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 10.28 71.98 0.74 -2.25 16 2 C 0.05 1.56 5.45 71.98 0.39 1.95 16 3 O -0.33 -13.01 9.35 -90.64 -0.85 -13.85 16 4 C -0.05 -2.33 6.73 22.87 0.15 -2.18 16 5 C -0.16 -7.31 8.94 22.39 0.20 -7.11 16 6 C -0.06 -2.95 6.73 23.05 0.16 -2.79 16 7 O -0.50 -23.83 12.78 -90.15 -1.15 -24.98 16 8 C 0.08 4.27 5.58 -21.19 -0.12 4.15 16 9 C -0.48 -26.99 8.69 23.33 0.20 -26.78 16 10 H 0.07 3.96 7.65 -2.91 -0.02 3.94 16 11 C 0.04 1.90 5.14 85.21 0.44 2.34 16 12 N -0.82 -42.81 10.98 21.81 0.24 -42.57 16 13 Si 0.98 39.02 29.59 68.60 2.03 41.05 16 14 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 15 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 16 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 17 C -0.22 -11.80 8.49 22.79 0.19 -11.61 16 18 C 0.20 9.47 6.76 38.20 0.26 9.73 16 19 N -0.87 -33.26 9.09 -51.07 -0.46 -33.72 16 20 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 21 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 22 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.05 1.47 7.64 -2.39 -0.02 1.46 16 24 H 0.05 1.49 7.65 -2.39 -0.02 1.47 16 25 H 0.12 5.04 6.25 -2.91 -0.02 5.02 16 26 H 0.37 14.35 9.06 -74.06 -0.67 13.68 16 27 H 0.29 13.43 8.30 -92.71 -0.77 12.66 16 28 H 0.12 6.32 6.20 -2.91 -0.02 6.30 16 29 H 0.40 13.49 8.18 -92.71 -0.76 12.73 16 30 H 0.40 13.73 8.84 -92.71 -0.82 12.91 16 Total: -1.00 -64.05 260.10 1.37 -62.68 By element: Atomic # 1 Polarization: 46.99 SS G_CDS: -1.05 Total: 45.94 kcal Atomic # 6 Polarization: -37.17 SS G_CDS: 2.62 Total: -34.56 kcal Atomic # 7 Polarization: -76.06 SS G_CDS: -0.22 Total: -76.29 kcal Atomic # 8 Polarization: -36.83 SS G_CDS: -2.00 Total: -38.83 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Total: -64.05 1.37 -62.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575716491.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.918 kcal (2) G-P(sol) polarization free energy of solvation -64.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds