Wall clock time and date at job start Mon Mar 30 2020 03:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35973 * 117.00009 * 2 1 4 4 C 1.37902 * 119.92111 * 359.72376 * 3 2 1 5 5 C 1.40813 * 119.89095 * 179.77764 * 4 3 2 6 6 C 1.41181 * 120.12811 * 180.25606 * 5 4 3 7 7 H 1.07997 * 120.00162 * 24.86096 * 6 5 4 8 8 C 1.39847 * 119.99925 * 204.86818 * 6 5 4 9 9 N 1.30907 * 119.99984 * 17.96950 * 8 6 5 10 10 Si 1.86798 * 119.99977 * 197.96869 * 8 6 5 11 11 H 1.48496 * 109.46996 * 60.00125 * 10 8 6 12 12 H 1.48506 * 109.47063 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47308 * 300.00084 * 10 8 6 14 14 C 1.40799 * 119.74171 * 0.47301 * 5 4 3 15 15 C 1.37996 * 119.84731 * 359.77937 * 14 5 4 16 16 N 1.39868 * 119.94973 * 180.02562 * 15 14 5 17 17 C 1.39583 * 119.91964 * 180.02562 * 3 2 1 18 18 O 1.35814 * 119.86930 * 359.97438 * 17 3 2 19 19 C 1.42899 * 117.00047 * 90.00221 * 18 17 3 20 20 H 1.08992 * 109.47130 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47106 * 300.00172 * 1 2 3 22 22 H 1.08999 * 109.46964 * 59.99858 * 1 2 3 23 23 H 1.07992 * 120.05378 * 0.02562 * 4 3 2 24 24 H 0.96996 * 119.99929 * 179.97438 * 9 8 6 25 25 H 1.08004 * 120.07804 * 179.79330 * 14 5 4 26 26 H 0.97000 * 120.00063 * 179.97438 * 16 15 14 27 27 H 0.97005 * 120.00129 * 359.97438 * 16 15 14 28 28 H 1.09005 * 109.46992 * 300.00170 * 19 18 17 29 29 H 1.09005 * 109.47003 * 59.99353 * 19 18 17 30 30 H 1.08995 * 109.47333 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2937 2.3670 -0.0058 5 6 1.9336 3.6214 -0.0010 6 6 1.1679 4.8075 -0.0014 7 1 0.1607 4.8002 0.3882 8 6 1.7137 5.9919 -0.5065 9 7 2.7650 5.9482 -1.2853 10 14 0.9426 7.6363 -0.0698 11 1 0.9782 7.8242 1.4028 12 1 1.7025 8.7296 -0.7274 13 1 -0.4664 7.6622 -0.5382 14 6 3.3400 3.6880 -0.0005 15 6 4.0827 2.5249 0.0000 16 7 5.4799 2.5886 0.0010 17 6 3.4404 1.2826 -0.0005 18 8 4.1759 0.1409 -0.0005 19 6 4.5268 -0.4048 -1.2738 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 0.2153 2.3100 -0.0099 24 1 3.1434 6.7696 -1.6359 25 1 3.8365 4.6472 -0.0002 26 1 6.0027 1.7715 0.0017 27 1 5.9262 3.4499 0.0011 28 1 3.6197 -0.6407 -1.8304 29 1 5.1161 0.3233 -1.8312 30 1 5.1124 -1.3129 -1.1310 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575716931.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:36 Heat of formation + Delta-G solvation = -80.339501 kcal Electronic energy + Delta-G solvation = -15332.428307 eV Core-core repulsion = 12706.165180 eV Total energy + Delta-G solvation = -2626.263126 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.85177 -38.85556 -37.79302 -35.64203 -34.11793 -30.88898 -28.95095 -28.27455 -27.96882 -25.97862 -22.81339 -22.14537 -19.66073 -18.40841 -18.13011 -17.35578 -16.92302 -16.59727 -15.95464 -15.78275 -15.78195 -15.12119 -14.88327 -14.02270 -13.82480 -13.44406 -13.01891 -12.81609 -12.63943 -12.40327 -12.14781 -12.09981 -12.01235 -11.53417 -11.23260 -10.55950 -10.42889 -8.80979 -8.67970 -8.06233 -6.38928 0.91085 1.24988 1.40545 1.50985 1.55203 2.21319 2.55710 2.65322 3.28099 3.45280 3.77837 4.45460 4.46182 4.51516 4.64700 4.70090 4.77060 4.84790 4.99841 5.04331 5.12018 5.33575 5.44444 5.80943 5.97094 6.15269 6.40947 6.61376 6.74590 6.84570 6.98191 7.28985 7.33095 8.31021 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.031334 B = 0.009447 C = 0.007563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.397766 B = 2963.089284 C = 3701.390110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.335 6.335 3 C 0.160 3.840 4 C -0.351 4.351 5 C 0.139 3.861 6 C -0.489 4.489 7 H 0.079 0.921 8 C 0.039 3.961 9 N -0.810 5.810 10 Si 0.983 3.017 11 H -0.261 1.261 12 H -0.266 1.266 13 H -0.259 1.259 14 C -0.281 4.281 15 C 0.241 3.759 16 N -0.867 5.867 17 C -0.145 4.145 18 O -0.326 6.326 19 C 0.025 3.975 20 H 0.123 0.877 21 H 0.051 0.949 22 H 0.049 0.951 23 H 0.110 0.890 24 H 0.289 0.711 25 H 0.112 0.888 26 H 0.398 0.602 27 H 0.399 0.601 28 H 0.024 0.976 29 H 0.033 0.967 30 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.574 -3.790 0.052 3.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.249 6.249 3 C 0.114 3.886 4 C -0.372 4.372 5 C 0.136 3.864 6 C -0.518 4.518 7 H 0.097 0.903 8 C -0.178 4.178 9 N -0.434 5.434 10 Si 0.803 3.197 11 H -0.185 1.185 12 H -0.191 1.191 13 H -0.183 1.183 14 C -0.306 4.306 15 C 0.136 3.864 16 N -0.408 5.408 17 C -0.193 4.193 18 O -0.243 6.243 19 C -0.071 4.071 20 H 0.141 0.859 21 H 0.070 0.930 22 H 0.067 0.933 23 H 0.128 0.872 24 H 0.100 0.900 25 H 0.129 0.871 26 H 0.227 0.773 27 H 0.228 0.772 28 H 0.043 0.957 29 H 0.051 0.949 30 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.826 -3.966 0.046 4.051 hybrid contribution -0.246 0.953 -0.331 1.038 sum 0.580 -3.013 -0.285 3.081 Atomic orbital electron populations 1.23145 0.77777 1.04539 1.01296 1.85958 1.22424 1.27412 1.89065 1.18979 0.91130 0.83947 0.94547 1.20967 0.98289 0.91722 1.26238 1.17474 0.92097 0.92147 0.84731 1.19772 1.01208 0.93801 1.36973 0.90275 1.26782 0.94735 1.04563 0.91723 1.69939 1.20057 1.31758 1.21670 0.85241 0.79248 0.75494 0.79673 1.18517 1.19070 1.18320 1.20517 0.93861 0.95212 1.21000 1.17626 0.84740 0.91958 0.92075 1.42100 1.02238 1.10512 1.85981 1.17061 0.86383 0.84650 1.31232 1.86060 1.70959 1.38773 1.28490 1.23076 0.98837 0.98622 0.86522 0.85858 0.93033 0.93262 0.87166 0.89987 0.87066 0.77339 0.77181 0.95677 0.94878 0.87367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 9.81 113.37 1.11 1.99 16 2 O -0.33 -14.52 10.27 -79.17 -0.81 -15.33 16 3 C 0.16 7.90 6.69 22.51 0.15 8.05 16 4 C -0.35 -18.02 8.77 22.82 0.20 -17.82 16 5 C 0.14 7.67 5.57 -21.30 -0.12 7.55 16 6 C -0.49 -26.18 9.03 23.38 0.21 -25.97 16 7 H 0.08 4.06 7.91 -2.91 -0.02 4.03 16 8 C 0.04 1.92 5.13 85.22 0.44 2.35 16 9 N -0.81 -41.29 10.96 21.81 0.24 -41.05 16 10 Si 0.98 37.17 29.60 68.60 2.03 39.20 16 11 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 12 H -0.27 -9.47 7.11 99.48 0.71 -8.76 16 13 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 14 C -0.28 -14.98 8.51 22.84 0.19 -14.79 16 15 C 0.24 11.65 6.76 38.19 0.26 11.91 16 16 N -0.87 -33.22 9.08 -51.22 -0.47 -33.68 16 17 C -0.14 -7.08 5.78 22.99 0.13 -6.95 16 18 O -0.33 -14.22 9.41 -77.39 -0.73 -14.95 16 19 C 0.02 0.86 11.13 113.37 1.26 2.12 16 20 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 21 H 0.05 1.64 7.67 -2.38 -0.02 1.62 16 22 H 0.05 1.59 7.64 -2.39 -0.02 1.57 16 23 H 0.11 5.25 6.26 -2.91 -0.02 5.24 16 24 H 0.29 13.27 8.30 -92.71 -0.77 12.50 16 25 H 0.11 6.05 6.16 -2.91 -0.02 6.03 16 26 H 0.40 13.53 8.18 -92.71 -0.76 12.77 16 27 H 0.40 13.76 8.84 -92.70 -0.82 12.94 16 28 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 30 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 Total: -1.00 -63.10 261.33 3.70 -59.40 By element: Atomic # 1 Polarization: 38.37 SS G_CDS: -0.40 Total: 37.97 kcal Atomic # 6 Polarization: -35.39 SS G_CDS: 3.84 Total: -31.55 kcal Atomic # 7 Polarization: -74.51 SS G_CDS: -0.23 Total: -74.73 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -1.54 Total: -30.28 kcal Atomic # 14 Polarization: 37.17 SS G_CDS: 2.03 Total: 39.20 kcal Total: -63.10 3.70 -59.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575716931.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.941 kcal (2) G-P(sol) polarization free energy of solvation -63.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds