Wall clock time and date at job start Mon Mar 30 2020 03:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.36006 * 117.00193 * 2 1 4 4 C 1.38587 * 119.91777 * 359.97438 * 3 2 1 5 5 C 1.39461 * 120.46231 * 179.97438 * 4 3 2 6 6 N 1.39813 * 119.84858 * 180.02562 * 5 4 3 7 7 C 1.38086 * 120.30539 * 0.02562 * 5 4 3 8 8 C 1.40704 * 119.83432 * 359.97438 * 7 5 4 9 9 C 1.41163 * 120.22459 * 179.97438 * 8 7 5 10 10 H 1.07998 * 120.00107 * 208.81805 * 9 8 7 11 11 C 1.39896 * 120.00248 * 28.81858 * 9 8 7 12 12 N 1.30879 * 120.00006 * 197.70786 * 11 9 8 13 13 Si 1.86802 * 119.99720 * 17.70973 * 11 9 8 14 14 H 1.48508 * 109.47047 * 270.00095 * 13 11 9 15 15 H 1.48496 * 109.47311 * 29.99700 * 13 11 9 16 16 H 1.48497 * 109.47228 * 150.00421 * 13 11 9 17 17 C 1.38875 * 119.92288 * 180.23245 * 3 2 1 18 18 O 1.35793 * 120.15927 * 0.02562 * 17 3 2 19 19 C 1.42898 * 116.99816 * 270.26157 * 18 17 3 20 20 H 1.09006 * 109.47354 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.47775 * 300.00362 * 1 2 3 22 22 H 1.09008 * 109.47189 * 60.00766 * 1 2 3 23 23 H 1.07995 * 119.77277 * 0.02562 * 4 3 2 24 24 H 0.96999 * 120.00230 * 179.97438 * 6 5 4 25 25 H 0.97005 * 120.00126 * 359.97438 * 6 5 4 26 26 H 1.07999 * 120.08066 * 180.02562 * 7 5 4 27 27 H 0.96994 * 120.00352 * 355.43573 * 12 11 9 28 28 H 1.09010 * 109.47064 * 299.99387 * 19 18 17 29 29 H 1.08999 * 109.47771 * 59.99717 * 19 18 17 30 30 H 1.08998 * 109.46930 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2900 2.3730 -0.0005 5 6 1.9113 3.6216 0.0000 6 7 1.1357 4.7848 0.0000 7 6 3.2891 3.7142 0.0005 8 6 4.0694 2.5434 0.0011 9 6 5.4785 2.6286 0.0011 10 1 6.0669 1.8430 -0.4494 11 6 6.1127 3.7305 0.5846 12 7 7.3612 3.9959 0.2954 13 14 5.1774 4.8232 1.7766 14 1 4.5114 5.9181 1.0261 15 1 4.1535 4.0169 2.4882 16 1 6.1238 5.4036 2.7628 17 6 3.4333 1.2826 -0.0049 18 8 4.1745 0.1448 -0.0102 19 6 4.5283 -0.4049 1.2605 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5137 -0.8901 23 1 0.2118 2.3107 -0.0005 24 1 1.5655 5.6544 0.0007 25 1 0.1677 4.7224 -0.0008 26 1 3.7664 4.6830 0.0014 27 1 7.8668 3.3921 -0.2710 28 1 5.1142 0.3237 1.8211 29 1 3.6227 -0.6479 1.8163 30 1 5.1178 -1.3099 1.1135 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575717328.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:49 Heat of formation + Delta-G solvation = -61.597759 kcal Electronic energy + Delta-G solvation = -15535.439025 eV Core-core repulsion = 12909.988601 eV Total energy + Delta-G solvation = -2625.450423 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -39.22808 -37.11180 -36.33308 -34.03830 -32.30224 -29.65175 -27.87224 -26.56428 -25.67428 -24.23161 -21.34741 -20.19038 -18.42283 -16.91409 -16.55415 -16.12962 -15.12186 -14.78690 -14.62559 -14.11738 -13.96003 -13.45346 -13.13289 -12.98415 -12.05807 -11.89647 -11.60878 -11.25757 -11.05973 -10.84961 -10.50831 -10.36763 -9.92435 -9.49993 -9.35761 -8.71316 -8.52820 -7.54910 -7.23329 -6.42455 -4.57455 2.66243 2.71923 3.18921 3.36885 3.56358 4.02079 4.08163 4.47697 4.63671 5.04872 5.50391 5.54088 5.61644 5.78393 6.13376 6.25630 6.33266 6.36900 6.50626 6.58192 6.90792 7.04815 7.36757 7.43174 7.57556 7.69081 8.02732 8.20901 8.38199 8.47707 8.55941 8.76426 9.12870 9.98970 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.026229 B = 0.012957 C = 0.009428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.244439 B = 2160.501684 C = 2969.280084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.318 6.318 3 C 0.176 3.824 4 C -0.378 4.378 5 C 0.273 3.727 6 N -0.889 5.889 7 C -0.334 4.334 8 C 0.142 3.858 9 C -0.490 4.490 10 H 0.085 0.915 11 C 0.041 3.959 12 N -0.811 5.811 13 Si 1.083 2.917 14 H -0.279 1.279 15 H -0.264 1.264 16 H -0.294 1.294 17 C -0.088 4.088 18 O -0.313 6.313 19 C 0.035 3.965 20 H 0.085 0.915 21 H 0.046 0.954 22 H 0.047 0.953 23 H 0.103 0.897 24 H 0.391 0.609 25 H 0.386 0.614 26 H 0.109 0.891 27 H 0.288 0.712 28 H 0.039 0.961 29 H 0.026 0.974 30 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.576 -1.057 2.230 9.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.231 6.231 3 C 0.130 3.870 4 C -0.401 4.401 5 C 0.170 3.830 6 N -0.428 5.428 7 C -0.358 4.358 8 C 0.137 3.863 9 C -0.518 4.518 10 H 0.103 0.897 11 C -0.178 4.178 12 N -0.433 5.433 13 Si 0.910 3.090 14 H -0.207 1.207 15 H -0.188 1.188 16 H -0.221 1.221 17 C -0.134 4.134 18 O -0.229 6.229 19 C -0.061 4.061 20 H 0.103 0.897 21 H 0.064 0.936 22 H 0.065 0.935 23 H 0.121 0.879 24 H 0.218 0.782 25 H 0.213 0.787 26 H 0.127 0.873 27 H 0.099 0.901 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.130 -0.076 2.940 9.592 hybrid contribution -0.605 -0.870 -0.813 1.336 sum -9.735 -0.946 2.127 10.010 Atomic orbital electron populations 1.22823 0.80622 1.02110 1.00675 1.86107 1.19610 1.28276 1.89121 1.18951 0.91051 0.82878 0.94082 1.19717 0.97327 0.90630 1.32444 1.17215 0.90258 0.85434 0.90082 1.42446 1.07627 1.05825 1.86934 1.20362 0.91007 0.97957 1.26486 1.17429 0.93579 0.88987 0.86311 1.20574 0.91640 1.06876 1.32726 0.89693 1.27372 0.96511 0.96700 0.97266 1.70549 1.10312 1.33984 1.28442 0.83447 0.74491 0.75750 0.75335 1.20659 1.18842 1.22134 1.17745 0.84864 0.86406 1.24368 1.86048 1.71085 1.39092 1.26646 1.22761 0.98196 0.97332 0.87792 0.89672 0.93556 0.93467 0.87854 0.78227 0.78715 0.87302 0.90078 0.94270 0.95510 0.91349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.81 101.05 0.99 1.50 16 2 O -0.32 -6.70 10.27 -34.53 -0.35 -7.06 16 3 C 0.18 4.14 6.69 -39.22 -0.26 3.87 16 4 C -0.38 -8.09 8.89 -39.00 -0.35 -8.44 16 5 C 0.27 5.91 6.74 -83.82 -0.56 5.34 16 6 N -0.89 -14.76 9.09 32.39 0.29 -14.46 16 7 C -0.33 -8.16 7.10 -38.71 -0.27 -8.43 16 8 C 0.14 3.77 5.14 -106.72 -0.55 3.22 16 9 C -0.49 -13.53 9.06 -37.85 -0.34 -13.88 16 10 H 0.09 2.49 7.87 -52.49 -0.41 2.07 16 11 C 0.04 1.10 5.41 -17.34 -0.09 1.01 16 12 N -0.81 -21.84 13.66 55.55 0.76 -21.08 16 13 Si 1.08 24.63 24.90 -169.99 -4.23 20.40 16 14 H -0.28 -5.94 6.43 56.52 0.36 -5.58 16 15 H -0.26 -6.04 7.03 56.52 0.40 -5.64 16 16 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 17 C -0.09 -2.27 5.77 -38.21 -0.22 -2.49 16 18 O -0.31 -7.97 9.52 -33.87 -0.32 -8.29 16 19 C 0.03 0.74 11.13 101.05 1.12 1.86 16 20 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 21 H 0.05 0.65 7.65 -51.93 -0.40 0.25 16 22 H 0.05 0.67 7.65 -51.92 -0.40 0.28 16 23 H 0.10 1.90 6.25 -52.49 -0.33 1.57 16 24 H 0.39 5.89 8.83 -40.82 -0.36 5.53 16 25 H 0.39 5.24 8.84 -40.82 -0.36 4.88 16 26 H 0.11 2.61 4.39 -52.49 -0.23 2.38 16 27 H 0.29 7.58 8.73 -40.82 -0.36 7.22 16 28 H 0.04 0.85 8.14 -51.92 -0.42 0.43 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 256.53 15.07 3.87 3.87 Total: -1.00 -30.31 256.53 -3.90 -34.21 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -3.37 Total: 8.85 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -0.54 Total: -16.44 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 1.05 Total: -35.54 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.68 Total: -15.35 kcal Atomic # 14 Polarization: 24.63 SS G_CDS: -4.23 Total: 20.40 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -30.31 -3.90 -34.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575717328.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.384 kcal (2) G-P(sol) polarization free energy of solvation -30.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds