Wall clock time and date at job start Mon Mar 30 2020 03:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.36006 * 117.00193 * 2 1 4 4 C 1.38587 * 119.91777 * 359.97438 * 3 2 1 5 5 C 1.39461 * 120.46231 * 179.97438 * 4 3 2 6 6 N 1.39813 * 119.84858 * 180.02562 * 5 4 3 7 7 C 1.38086 * 120.30539 * 0.02562 * 5 4 3 8 8 C 1.40704 * 119.83432 * 359.97438 * 7 5 4 9 9 C 1.41163 * 120.22459 * 179.97438 * 8 7 5 10 10 H 1.07998 * 120.00107 * 208.81805 * 9 8 7 11 11 C 1.39896 * 120.00248 * 28.81858 * 9 8 7 12 12 N 1.30879 * 120.00006 * 197.70786 * 11 9 8 13 13 Si 1.86802 * 119.99720 * 17.70973 * 11 9 8 14 14 H 1.48508 * 109.47047 * 270.00095 * 13 11 9 15 15 H 1.48496 * 109.47311 * 29.99700 * 13 11 9 16 16 H 1.48497 * 109.47228 * 150.00421 * 13 11 9 17 17 C 1.38875 * 119.92288 * 180.23245 * 3 2 1 18 18 O 1.35793 * 120.15927 * 0.02562 * 17 3 2 19 19 C 1.42898 * 116.99816 * 270.26157 * 18 17 3 20 20 H 1.09006 * 109.47354 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.47775 * 300.00362 * 1 2 3 22 22 H 1.09008 * 109.47189 * 60.00766 * 1 2 3 23 23 H 1.07995 * 119.77277 * 0.02562 * 4 3 2 24 24 H 0.96999 * 120.00230 * 179.97438 * 6 5 4 25 25 H 0.97005 * 120.00126 * 359.97438 * 6 5 4 26 26 H 1.07999 * 120.08066 * 180.02562 * 7 5 4 27 27 H 0.96994 * 120.00352 * 355.43573 * 12 11 9 28 28 H 1.09010 * 109.47064 * 299.99387 * 19 18 17 29 29 H 1.08999 * 109.47771 * 59.99717 * 19 18 17 30 30 H 1.08998 * 109.46930 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2900 2.3730 -0.0005 5 6 1.9113 3.6216 0.0000 6 7 1.1357 4.7848 0.0000 7 6 3.2891 3.7142 0.0005 8 6 4.0694 2.5434 0.0011 9 6 5.4785 2.6286 0.0011 10 1 6.0669 1.8430 -0.4494 11 6 6.1127 3.7305 0.5846 12 7 7.3612 3.9959 0.2954 13 14 5.1774 4.8232 1.7766 14 1 4.5114 5.9181 1.0261 15 1 4.1535 4.0169 2.4882 16 1 6.1238 5.4036 2.7628 17 6 3.4333 1.2826 -0.0049 18 8 4.1745 0.1448 -0.0102 19 6 4.5283 -0.4049 1.2605 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5137 -0.8901 23 1 0.2118 2.3107 -0.0005 24 1 1.5655 5.6544 0.0007 25 1 0.1677 4.7224 -0.0008 26 1 3.7664 4.6830 0.0014 27 1 7.8668 3.3921 -0.2710 28 1 5.1142 0.3237 1.8211 29 1 3.6227 -0.6479 1.8163 30 1 5.1178 -1.3099 1.1135 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575717328.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:47 Heat of formation + Delta-G solvation = -84.329178 kcal Electronic energy + Delta-G solvation = -15536.424733 eV Core-core repulsion = 12909.988601 eV Total energy + Delta-G solvation = -2626.436132 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 2.52 seconds Orbital eigenvalues (eV) -40.95412 -38.80179 -38.09494 -35.91362 -34.02855 -31.45474 -29.43674 -28.04616 -27.48784 -26.03866 -23.11208 -21.99066 -20.29449 -18.62800 -18.20622 -17.87509 -16.70293 -16.44271 -16.11860 -15.82581 -15.67708 -15.25920 -15.00149 -14.64080 -13.70265 -13.55878 -13.42881 -13.02333 -12.54657 -12.37077 -12.17769 -12.03675 -11.73909 -11.38734 -11.21272 -10.48801 -10.35518 -9.45031 -9.12942 -8.11224 -6.61502 0.81070 0.90434 1.36303 1.57234 1.79422 2.19067 2.56874 2.63271 3.17693 3.21260 3.67133 4.37927 4.45799 4.47206 4.53340 4.63046 4.67891 4.74595 4.78555 4.85738 5.10886 5.31227 5.45897 5.61282 5.68080 5.81447 6.20740 6.42395 6.53359 6.75837 6.82007 7.23093 7.28810 7.96321 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.026229 B = 0.012957 C = 0.009428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.244439 B = 2160.501684 C = 2969.280084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.336 6.336 3 C 0.175 3.825 4 C -0.363 4.363 5 C 0.279 3.721 6 N -0.866 5.866 7 C -0.350 4.350 8 C 0.124 3.876 9 C -0.523 4.523 10 H 0.045 0.955 11 C 0.011 3.989 12 N -0.837 5.837 13 Si 1.116 2.884 14 H -0.251 1.251 15 H -0.267 1.267 16 H -0.284 1.284 17 C -0.123 4.123 18 O -0.338 6.338 19 C 0.036 3.964 20 H 0.117 0.883 21 H 0.061 0.939 22 H 0.059 0.941 23 H 0.143 0.857 24 H 0.402 0.598 25 H 0.407 0.593 26 H 0.111 0.889 27 H 0.277 0.723 28 H 0.022 0.978 29 H 0.038 0.962 30 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.177 -0.365 2.835 13.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.250 6.250 3 C 0.128 3.872 4 C -0.387 4.387 5 C 0.173 3.827 6 N -0.407 5.407 7 C -0.374 4.374 8 C 0.120 3.880 9 C -0.553 4.553 10 H 0.063 0.937 11 C -0.203 4.203 12 N -0.460 5.460 13 Si 0.937 3.063 14 H -0.177 1.177 15 H -0.192 1.192 16 H -0.212 1.212 17 C -0.169 4.169 18 O -0.255 6.255 19 C -0.059 4.059 20 H 0.135 0.865 21 H 0.080 0.920 22 H 0.078 0.922 23 H 0.160 0.840 24 H 0.231 0.769 25 H 0.236 0.764 26 H 0.129 0.871 27 H 0.088 0.912 28 H 0.040 0.960 29 H 0.057 0.943 30 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.776 0.638 3.527 13.269 hybrid contribution 0.224 -1.254 -1.047 1.649 sum -12.552 -0.616 2.480 12.809 Atomic orbital electron populations 1.23249 0.77250 1.04851 1.01906 1.86080 1.23008 1.27207 1.88676 1.19012 0.90523 0.84532 0.93129 1.20138 0.99177 0.89689 1.29684 1.17270 0.89707 0.87238 0.88445 1.42327 1.08513 1.04803 1.85014 1.20441 0.92383 0.97226 1.27382 1.17644 0.93308 0.90482 0.86588 1.20396 0.92433 1.07002 1.35423 0.93705 1.28455 0.96643 0.97503 0.97654 1.70620 1.10953 1.34454 1.29996 0.83066 0.73889 0.75247 0.74145 1.17680 1.19232 1.21158 1.18113 0.86468 0.86300 1.26060 1.85957 1.71533 1.39240 1.28756 1.22874 0.98833 0.97723 0.86471 0.86500 0.92048 0.92243 0.83978 0.76929 0.76357 0.87108 0.91198 0.95952 0.94318 0.88506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 9.81 113.37 1.11 1.67 16 2 O -0.34 -13.30 10.27 -79.49 -0.82 -14.12 16 3 C 0.17 7.86 6.69 22.51 0.15 8.01 16 4 C -0.36 -14.14 8.89 22.65 0.20 -13.94 16 5 C 0.28 11.12 6.74 38.13 0.26 11.38 16 6 N -0.87 -24.52 9.09 -51.44 -0.47 -24.99 16 7 C -0.35 -16.65 7.10 22.84 0.16 -16.49 16 8 C 0.12 6.72 5.14 -21.23 -0.11 6.61 16 9 C -0.52 -30.52 9.06 23.39 0.21 -30.31 16 10 H 0.04 2.86 7.87 -2.91 -0.02 2.84 16 11 C 0.01 0.62 5.41 85.24 0.46 1.08 16 12 N -0.84 -47.19 13.66 21.82 0.30 -46.89 16 13 Si 1.12 49.53 24.90 68.60 1.71 51.24 16 14 H -0.25 -9.92 6.43 99.48 0.64 -9.28 16 15 H -0.27 -11.90 7.03 99.48 0.70 -11.20 16 16 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 17 C -0.12 -6.46 5.77 23.16 0.13 -6.33 16 18 O -0.34 -17.71 9.52 -77.10 -0.73 -18.44 16 19 C 0.04 1.55 11.13 113.37 1.26 2.81 16 20 H 0.12 2.28 8.14 -2.38 -0.02 2.26 16 21 H 0.06 1.42 7.65 -2.39 -0.02 1.40 16 22 H 0.06 1.40 7.65 -2.38 -0.02 1.39 16 23 H 0.14 4.37 6.25 -2.91 -0.02 4.35 16 24 H 0.40 10.22 8.83 -92.71 -0.82 9.40 16 25 H 0.41 8.66 8.84 -92.70 -0.82 7.84 16 26 H 0.11 5.14 4.39 -2.91 -0.01 5.12 16 27 H 0.28 15.66 8.73 -92.71 -0.81 14.85 16 28 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 29 H 0.04 1.53 8.14 -2.39 -0.02 1.52 16 30 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 Total: -1.00 -68.37 256.53 3.26 -65.11 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: -0.57 Total: 23.58 kcal Atomic # 6 Polarization: -39.33 SS G_CDS: 3.84 Total: -35.49 kcal Atomic # 7 Polarization: -71.71 SS G_CDS: -0.17 Total: -71.88 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -1.55 Total: -32.56 kcal Atomic # 14 Polarization: 49.53 SS G_CDS: 1.71 Total: 51.24 kcal Total: -68.37 3.26 -65.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575717328.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.219 kcal (2) G-P(sol) polarization free energy of solvation -68.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.52 seconds