Wall clock time and date at job start Mon Mar 30 2020 02:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42901 * 109.46959 * 2 1 4 4 C 1.35956 * 117.00039 * 179.97438 * 3 2 1 5 5 C 1.39423 * 119.79637 * 359.97438 * 4 3 2 6 6 C 1.38407 * 120.52127 * 180.02562 * 5 4 3 7 7 O 1.36008 * 119.94614 * 179.97438 * 6 5 4 8 8 C 1.39215 * 120.11137 * 359.97438 * 6 5 4 9 9 N 1.39080 * 120.20541 * 179.97438 * 8 6 5 10 10 C 1.41395 * 119.59728 * 0.02562 * 8 6 5 11 11 C 1.41046 * 120.25942 * 179.97438 * 10 8 6 12 12 H 1.08003 * 119.99724 * 334.53607 * 11 10 8 13 13 C 1.39876 * 120.00395 * 154.53243 * 11 10 8 14 14 N 1.30904 * 119.99986 * 334.63508 * 13 11 10 15 15 Si 1.86807 * 120.00294 * 154.63398 * 13 11 10 16 16 H 1.48502 * 109.47232 * 180.02562 * 15 13 11 17 17 H 1.48501 * 109.46966 * 300.00270 * 15 13 11 18 18 H 1.48498 * 109.46755 * 60.00155 * 15 13 11 19 19 C 1.37810 * 119.79792 * 180.27875 * 4 3 2 20 20 H 1.09001 * 109.47016 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47228 * 299.99890 * 1 2 3 22 22 H 1.08998 * 109.47369 * 60.00301 * 1 2 3 23 23 H 1.09002 * 109.47211 * 239.99658 * 2 1 3 24 24 H 1.08998 * 109.47369 * 119.99699 * 2 1 3 25 25 H 1.08003 * 119.73797 * 0.04329 * 5 4 3 26 26 H 0.96704 * 114.00024 * 270.01807 * 7 6 5 27 27 H 0.96996 * 119.99998 * 180.02562 * 9 8 6 28 28 H 0.96996 * 119.99566 * 0.02562 * 9 8 6 29 29 H 0.96998 * 119.99887 * 354.17349 * 14 13 11 30 30 H 1.07996 * 120.06024 * 359.97438 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3541 1.5255 0.0005 5 6 4.1995 0.4168 0.0016 6 6 5.5738 0.5808 0.0027 7 8 6.3876 -0.5089 0.0043 8 6 6.1246 1.8594 0.0022 9 7 7.5053 2.0265 0.0038 10 6 5.2718 2.9872 0.0011 11 6 5.8148 4.2889 0.0012 12 1 6.8017 4.4623 0.4041 13 6 5.0752 5.3553 -0.5206 14 7 4.1540 5.1331 -1.4238 15 14 5.4019 7.0968 0.0713 16 1 4.4918 8.0371 -0.6307 17 1 5.1615 7.1755 1.5346 18 1 6.8117 7.4619 -0.2191 19 6 3.8763 2.8008 0.0064 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.7786 -0.5778 0.0013 26 1 6.6220 -0.8235 0.8881 27 1 7.8859 2.9187 0.0039 28 1 8.0877 1.2508 0.0050 29 1 4.0415 4.2431 -1.7929 30 1 3.2163 3.6556 0.0101 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575717725.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:17 Heat of formation + Delta-G solvation = -76.338649 kcal Electronic energy + Delta-G solvation = -15159.269284 eV Core-core repulsion = 12533.179647 eV Total energy + Delta-G solvation = -2626.089636 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.07138 -37.56912 -35.82281 -33.31346 -32.72899 -30.86363 -28.73204 -26.61715 -25.05835 -22.90690 -21.00200 -20.42756 -18.52579 -16.78357 -16.10514 -15.97607 -15.60701 -15.37546 -14.18303 -14.07011 -13.74839 -12.77812 -12.67441 -12.63436 -12.44858 -12.32702 -11.57455 -11.18243 -11.07860 -10.89985 -10.39531 -10.34645 -10.16682 -9.97133 -9.46930 -8.95969 -8.66895 -7.55088 -7.22031 -6.14439 -4.30102 2.61155 2.95782 3.16889 3.26685 3.37609 4.04102 4.13734 4.52541 5.12193 5.24137 5.30160 5.43134 5.49899 5.65120 5.86690 6.12631 6.23003 6.27193 6.60621 6.74422 7.11230 7.26145 7.41550 7.54693 7.76679 7.92434 8.00536 8.37520 8.50509 8.59163 8.81673 9.01552 9.05129 10.10405 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.022846 B = 0.010380 C = 0.007361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.321385 B = 2696.745771 C = 3802.764310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.061 3.939 3 O -0.326 6.326 4 C 0.127 3.873 5 C -0.311 4.311 6 C 0.062 3.938 7 O -0.504 6.504 8 C 0.078 3.922 9 N -0.878 5.878 10 C 0.091 3.909 11 C -0.519 4.519 12 H 0.075 0.925 13 C 0.039 3.961 14 N -0.793 5.793 15 Si 1.065 2.935 16 H -0.274 1.274 17 H -0.275 1.275 18 H -0.277 1.277 19 C -0.236 4.236 20 H 0.068 0.932 21 H 0.061 0.939 22 H 0.062 0.938 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.101 0.899 26 H 0.361 0.639 27 H 0.391 0.609 28 H 0.381 0.619 29 H 0.301 0.699 30 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.598 -4.858 3.341 5.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.241 6.241 4 C 0.082 3.918 5 C -0.332 4.332 6 C 0.013 3.987 7 O -0.311 6.311 8 C -0.024 4.024 9 N -0.421 5.421 10 C 0.086 3.914 11 C -0.547 4.547 12 H 0.093 0.907 13 C -0.184 4.184 14 N -0.416 5.416 15 Si 0.889 3.111 16 H -0.199 1.199 17 H -0.201 1.201 18 H -0.203 1.203 19 C -0.257 4.257 20 H 0.087 0.913 21 H 0.081 0.919 22 H 0.081 0.919 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.119 0.881 26 H 0.213 0.787 27 H 0.220 0.780 28 H 0.207 0.793 29 H 0.115 0.885 30 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.449 -3.087 2.512 4.235 hybrid contribution 1.011 -2.061 0.636 2.382 sum -0.438 -5.148 3.148 6.050 Atomic orbital electron populations 1.21751 0.94014 1.01820 1.03080 1.22472 0.94565 0.83948 1.00557 1.86006 1.21011 1.27057 1.90056 1.18417 0.80177 0.93843 0.99345 1.20299 0.92674 0.96370 1.23866 1.17287 0.87983 0.83506 1.09973 1.84827 1.68498 1.46134 1.31629 1.18092 0.84573 0.92209 1.07496 1.41727 1.03281 1.09029 1.88074 1.16937 0.89970 0.91623 0.92853 1.20138 1.04371 0.92461 1.37768 0.90712 1.26932 0.92128 1.06212 0.93090 1.70445 1.25923 1.28596 1.16611 0.83642 0.77008 0.73347 0.77139 1.19883 1.20070 1.20302 1.20147 0.94376 0.93424 1.17798 0.91276 0.91949 0.91869 0.93033 0.93130 0.88084 0.78702 0.78018 0.79300 0.88475 0.86617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 10.28 37.16 0.38 -1.63 16 2 C 0.06 1.04 5.45 37.16 0.20 1.24 16 3 O -0.33 -7.33 10.13 -19.60 -0.20 -7.53 16 4 C 0.13 3.15 6.67 -39.30 -0.26 2.88 16 5 C -0.31 -7.28 8.96 -39.08 -0.35 -7.63 16 6 C 0.06 1.45 6.71 -39.16 -0.26 1.19 16 7 O -0.50 -10.06 12.73 -19.77 -0.25 -10.31 16 8 C 0.08 1.90 6.81 -83.01 -0.56 1.33 16 9 N -0.88 -18.07 8.98 32.85 0.29 -17.77 16 10 C 0.09 2.42 5.30 -106.67 -0.57 1.85 16 11 C -0.52 -13.43 8.43 -37.91 -0.32 -13.75 16 12 H 0.07 1.83 6.74 -52.48 -0.35 1.47 16 13 C 0.04 0.98 4.93 -17.33 -0.09 0.90 16 14 N -0.79 -21.37 12.32 55.54 0.68 -20.69 16 15 Si 1.06 21.49 30.00 -169.99 -5.10 16.39 16 16 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 17 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 18 H -0.28 -5.26 7.11 56.52 0.40 -4.85 16 19 C -0.24 -6.30 7.86 -38.78 -0.30 -6.61 16 20 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 21 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.05 0.87 7.65 -51.93 -0.40 0.47 16 24 H 0.05 0.83 7.65 -51.93 -0.40 0.43 16 25 H 0.10 2.14 6.26 -52.48 -0.33 1.82 16 26 H 0.36 5.48 9.07 45.56 0.41 5.89 16 27 H 0.39 7.80 7.04 -40.82 -0.29 7.52 16 28 H 0.38 6.85 8.17 -40.82 -0.33 6.52 16 29 H 0.30 8.47 6.70 -40.82 -0.27 8.20 16 30 H 0.12 3.24 6.50 -52.49 -0.34 2.90 16 LS Contribution 257.09 15.07 3.87 3.87 Total: -1.00 -29.72 257.09 -5.19 -34.91 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: -2.36 Total: 21.35 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: -2.13 Total: -20.22 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.98 Total: -38.46 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.45 Total: -17.84 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.10 Total: 16.39 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.72 -5.19 -34.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575717725.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.432 kcal (2) G-P(sol) polarization free energy of solvation -29.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds