Wall clock time and date at job start Mon Mar 30 2020 02:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42901 * 109.46959 * 2 1 4 4 C 1.35956 * 117.00039 * 179.97438 * 3 2 1 5 5 C 1.39423 * 119.79637 * 359.97438 * 4 3 2 6 6 C 1.38407 * 120.52127 * 180.02562 * 5 4 3 7 7 O 1.36008 * 119.94614 * 179.97438 * 6 5 4 8 8 C 1.39215 * 120.11137 * 359.97438 * 6 5 4 9 9 N 1.39080 * 120.20541 * 179.97438 * 8 6 5 10 10 C 1.41395 * 119.59728 * 0.02562 * 8 6 5 11 11 C 1.41046 * 120.25942 * 179.97438 * 10 8 6 12 12 H 1.08003 * 119.99724 * 334.53607 * 11 10 8 13 13 C 1.39876 * 120.00395 * 154.53243 * 11 10 8 14 14 N 1.30904 * 119.99986 * 334.63508 * 13 11 10 15 15 Si 1.86807 * 120.00294 * 154.63398 * 13 11 10 16 16 H 1.48502 * 109.47232 * 180.02562 * 15 13 11 17 17 H 1.48501 * 109.46966 * 300.00270 * 15 13 11 18 18 H 1.48498 * 109.46755 * 60.00155 * 15 13 11 19 19 C 1.37810 * 119.79792 * 180.27875 * 4 3 2 20 20 H 1.09001 * 109.47016 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47228 * 299.99890 * 1 2 3 22 22 H 1.08998 * 109.47369 * 60.00301 * 1 2 3 23 23 H 1.09002 * 109.47211 * 239.99658 * 2 1 3 24 24 H 1.08998 * 109.47369 * 119.99699 * 2 1 3 25 25 H 1.08003 * 119.73797 * 0.04329 * 5 4 3 26 26 H 0.96704 * 114.00024 * 270.01807 * 7 6 5 27 27 H 0.96996 * 119.99998 * 180.02562 * 9 8 6 28 28 H 0.96996 * 119.99566 * 0.02562 * 9 8 6 29 29 H 0.96998 * 119.99887 * 354.17349 * 14 13 11 30 30 H 1.07996 * 120.06024 * 359.97438 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3541 1.5255 0.0005 5 6 4.1995 0.4168 0.0016 6 6 5.5738 0.5808 0.0027 7 8 6.3876 -0.5089 0.0043 8 6 6.1246 1.8594 0.0022 9 7 7.5053 2.0265 0.0038 10 6 5.2718 2.9872 0.0011 11 6 5.8148 4.2889 0.0012 12 1 6.8017 4.4623 0.4041 13 6 5.0752 5.3553 -0.5206 14 7 4.1540 5.1331 -1.4238 15 14 5.4019 7.0968 0.0713 16 1 4.4918 8.0371 -0.6307 17 1 5.1615 7.1755 1.5346 18 1 6.8117 7.4619 -0.2191 19 6 3.8763 2.8008 0.0064 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.7786 -0.5778 0.0013 26 1 6.6220 -0.8235 0.8881 27 1 7.8859 2.9187 0.0039 28 1 8.0877 1.2508 0.0050 29 1 4.0415 4.2431 -1.7929 30 1 3.2163 3.6556 0.0101 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575717725.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:16 Heat of formation + Delta-G solvation = -98.554836 kcal Electronic energy + Delta-G solvation = -15160.232650 eV Core-core repulsion = 12533.179647 eV Total energy + Delta-G solvation = -2627.053003 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.85493 -39.26000 -37.59605 -35.14425 -34.43431 -32.23769 -30.62007 -28.42211 -26.94056 -24.36383 -22.81187 -22.20080 -20.29500 -18.57722 -17.87106 -17.67354 -17.40224 -16.86299 -15.84433 -15.73648 -15.49304 -14.64062 -14.36637 -14.29366 -13.96301 -13.54480 -13.23412 -12.78896 -12.70440 -12.56468 -11.97490 -11.88440 -11.81102 -11.69028 -11.26490 -10.81237 -10.42158 -9.47897 -9.20336 -7.97378 -6.26335 0.73096 1.07745 1.53419 1.65195 1.81769 2.36833 2.57589 2.67071 3.41690 3.51587 3.62562 4.07678 4.19708 4.35616 4.47985 4.65474 4.71353 4.92090 4.94673 5.20221 5.28540 5.45916 5.55483 5.60739 5.80212 5.98352 6.09437 6.54344 6.78422 6.86380 6.93991 7.26153 7.41659 8.09370 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.022846 B = 0.010380 C = 0.007361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.321385 B = 2696.745771 C = 3802.764310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.048 3.952 3 O -0.346 6.346 4 C 0.118 3.882 5 C -0.307 4.307 6 C 0.064 3.936 7 O -0.501 6.501 8 C 0.065 3.935 9 N -0.866 5.866 10 C 0.065 3.935 11 C -0.542 4.542 12 H 0.085 0.915 13 C 0.000 4.000 14 N -0.819 5.819 15 Si 1.117 2.883 16 H -0.277 1.277 17 H -0.266 1.266 18 H -0.252 1.252 19 C -0.261 4.261 20 H 0.105 0.895 21 H 0.062 0.938 22 H 0.058 0.942 23 H 0.055 0.945 24 H 0.061 0.939 25 H 0.125 0.875 26 H 0.388 0.612 27 H 0.394 0.606 28 H 0.395 0.605 29 H 0.282 0.718 30 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.025 -5.905 4.044 7.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.026 4.026 3 O -0.262 6.262 4 C 0.073 3.927 5 C -0.328 4.328 6 C 0.014 3.986 7 O -0.310 6.310 8 C -0.037 4.037 9 N -0.410 5.410 10 C 0.060 3.940 11 C -0.570 4.570 12 H 0.103 0.897 13 C -0.216 4.216 14 N -0.443 5.443 15 Si 0.935 3.065 16 H -0.202 1.202 17 H -0.191 1.191 18 H -0.177 1.177 19 C -0.282 4.282 20 H 0.124 0.876 21 H 0.081 0.919 22 H 0.077 0.923 23 H 0.073 0.927 24 H 0.080 0.920 25 H 0.143 0.857 26 H 0.244 0.756 27 H 0.223 0.777 28 H 0.224 0.776 29 H 0.094 0.906 30 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.846 -4.183 3.231 5.352 hybrid contribution 0.815 -1.966 0.441 2.173 sum -0.031 -6.149 3.671 7.161 Atomic orbital electron populations 1.21784 0.91083 1.04166 1.02939 1.22896 0.96941 0.81632 1.01177 1.85992 1.19829 1.30515 1.89816 1.18490 0.81512 0.93600 0.99112 1.20580 0.92784 0.96976 1.22442 1.17353 0.88363 0.84086 1.08817 1.84746 1.67708 1.44700 1.33881 1.18224 0.85887 0.92160 1.07479 1.41606 1.02062 1.09918 1.87427 1.17245 0.90341 0.92854 0.93556 1.20388 1.05163 0.92895 1.38571 0.89746 1.28412 0.91045 1.10064 0.92034 1.70567 1.27862 1.27262 1.18561 0.83005 0.78072 0.68516 0.76948 1.20230 1.19059 1.17650 1.20101 0.94638 0.93647 1.19858 0.87610 0.91887 0.92257 0.92690 0.92026 0.85714 0.75640 0.77677 0.77633 0.90610 0.89283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 10.28 71.98 0.74 -2.79 16 2 C 0.05 1.59 5.45 71.98 0.39 1.99 16 3 O -0.35 -15.65 10.13 -93.06 -0.94 -16.59 16 4 C 0.12 5.93 6.67 22.45 0.15 6.08 16 5 C -0.31 -13.97 8.96 22.60 0.20 -13.77 16 6 C 0.06 2.88 6.71 22.54 0.15 3.04 16 7 O -0.50 -18.41 12.73 -93.64 -1.19 -19.60 16 8 C 0.07 3.14 6.81 39.00 0.27 3.40 16 9 N -0.87 -34.40 8.98 -50.00 -0.45 -34.84 16 10 C 0.07 3.52 5.30 -21.19 -0.11 3.41 16 11 C -0.54 -28.46 8.43 23.36 0.20 -28.27 16 12 H 0.08 4.12 6.74 -2.91 -0.02 4.10 16 13 C 0.00 0.02 4.93 85.23 0.42 0.44 16 14 N -0.82 -45.90 12.32 21.82 0.27 -45.63 16 15 Si 1.12 43.27 30.00 68.60 2.06 45.33 16 16 H -0.28 -10.79 7.11 99.48 0.71 -10.08 16 17 H -0.27 -9.80 7.11 99.48 0.71 -9.10 16 18 H -0.25 -8.71 7.11 99.48 0.71 -8.00 16 19 C -0.26 -14.44 7.86 22.79 0.18 -14.27 16 20 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 21 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 22 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.05 1.76 7.65 -2.39 -0.02 1.74 16 24 H 0.06 1.88 7.65 -2.39 -0.02 1.86 16 25 H 0.13 4.98 6.26 -2.91 -0.02 4.96 16 26 H 0.39 10.29 9.07 -74.05 -0.67 9.62 16 27 H 0.39 15.28 7.04 -92.71 -0.65 14.63 16 28 H 0.40 13.31 8.17 -92.71 -0.76 12.56 16 29 H 0.28 16.72 6.70 -92.71 -0.62 16.10 16 30 H 0.09 5.29 6.50 -2.91 -0.02 5.27 16 Total: -1.00 -65.17 257.09 1.60 -63.57 By element: Atomic # 1 Polarization: 49.24 SS G_CDS: -0.73 Total: 48.51 kcal Atomic # 6 Polarization: -43.33 SS G_CDS: 2.59 Total: -40.74 kcal Atomic # 7 Polarization: -80.29 SS G_CDS: -0.18 Total: -80.47 kcal Atomic # 8 Polarization: -34.06 SS G_CDS: -2.13 Total: -36.19 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.06 Total: 45.33 kcal Total: -65.17 1.60 -63.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575717725.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.985 kcal (2) G-P(sol) polarization free energy of solvation -65.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds