Wall clock time and date at job start Mon Mar 30 2020 03:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47116 * 172.71629 * 3 2 1 5 5 C 1.37099 * 120.00174 * 89.99532 * 4 3 2 6 6 H 1.07999 * 119.99282 * 53.01321 * 5 4 3 7 7 C 1.38947 * 120.00293 * 233.00489 * 5 4 3 8 8 N 1.31410 * 120.00238 * 203.94429 * 7 5 4 9 9 Si 1.86801 * 119.99865 * 23.94860 * 7 5 4 10 10 H 1.48504 * 109.46912 * 95.26785 * 9 7 5 11 11 H 1.48499 * 109.47047 * 335.26841 * 9 7 5 12 12 H 1.48494 * 109.46990 * 215.26533 * 9 7 5 13 13 C 1.34781 * 119.99882 * 270.00101 * 4 3 2 14 14 O 1.21289 * 120.00446 * 354.25440 * 13 4 3 15 15 C 1.50707 * 119.99894 * 174.25741 * 13 4 3 16 16 H 1.08999 * 115.54771 * 296.70696 * 15 13 4 17 17 C 1.53001 * 117.49729 * 82.37606 * 15 13 4 18 18 C 1.52999 * 117.49789 * 151.03471 * 15 13 4 19 19 H 1.09005 * 117.50013 * 0.02562 * 18 15 13 20 20 O 1.42896 * 117.49935 * 145.02024 * 18 15 13 21 21 C 1.42903 * 114.00439 * 210.00390 * 20 18 15 22 22 H 4.40643 * 5.51383 * 179.97438 * 4 1 2 23 23 H 1.09005 * 109.47351 * 52.71519 * 3 2 1 24 24 H 1.09000 * 109.47041 * 292.71738 * 3 2 1 25 25 H 0.96996 * 120.00507 * 180.02562 * 8 7 5 26 26 H 1.09003 * 117.49412 * 214.97585 * 17 15 13 27 27 H 1.08999 * 117.50127 * 0.02562 * 17 15 13 28 28 H 1.09002 * 109.47363 * 59.99483 * 21 20 18 29 29 H 1.08995 * 109.47122 * 179.97438 * 21 20 18 30 30 H 1.09001 * 109.46400 * 299.99957 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3709 -0.1751 5 6 3.3618 2.1627 0.9207 6 1 3.9938 1.8076 1.7212 7 6 2.7799 3.4219 1.0012 8 7 3.3245 4.3504 1.7550 9 14 1.2235 3.7949 0.0380 10 1 0.0398 3.5881 0.9106 11 1 1.1381 2.8883 -1.1351 12 1 1.2552 5.2048 -0.4272 13 6 3.3581 1.8533 -1.4135 14 8 3.2570 1.1228 -2.3765 15 6 3.7348 3.3003 -1.6017 16 1 2.9815 4.0259 -1.2948 17 6 5.2036 3.6796 -1.4026 18 6 4.6039 3.6525 -2.8107 19 1 4.9029 2.8377 -3.4701 20 8 4.3663 4.9078 -3.4507 21 6 4.6565 4.9110 -4.8500 22 1 -1.0502 -0.0005 -0.0001 23 1 3.0097 -0.6217 -0.8177 24 1 3.0095 -0.3960 0.9479 25 1 2.9182 5.2293 1.8115 26 1 5.4166 4.6550 -0.9650 27 1 5.8976 2.8825 -1.1358 28 1 4.0333 4.1709 -5.3520 29 1 4.4499 5.8989 -5.2616 30 1 5.7073 4.6654 -5.0036 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689929409.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:52 Heat of formation + Delta-G solvation = 24.242473 kcal Electronic energy + Delta-G solvation = -15508.950300 eV Core-core repulsion = 12887.222189 eV Total energy + Delta-G solvation = -2621.728112 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.38743 -37.58398 -35.09478 -34.31709 -32.71328 -31.51747 -27.26214 -26.36079 -24.62655 -22.88331 -21.47856 -19.29352 -17.91219 -17.61246 -16.20873 -15.74169 -15.30486 -14.72895 -14.44222 -14.26101 -14.02135 -13.08479 -12.92343 -12.71367 -12.23865 -11.98620 -11.69674 -11.19729 -11.02189 -10.93970 -10.47884 -10.13851 -9.95983 -9.70323 -9.49663 -9.12610 -8.76640 -8.59856 -7.75651 -6.52227 -4.25736 3.11503 3.18684 3.24887 3.34533 3.48654 3.64278 3.84236 4.13876 4.39066 4.78656 4.85570 5.11992 5.39013 5.43292 5.51143 5.68383 5.74963 5.85823 5.94673 6.13840 6.22825 6.29778 6.51558 6.53706 6.72170 7.55085 7.62217 7.66888 8.23921 8.40304 8.91865 9.20033 9.61260 10.56672 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.025309 B = 0.012343 C = 0.010499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.061221 B = 2268.026739 C = 2666.169435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.166 4.166 3 C 0.206 3.794 4 N -0.463 5.463 5 C -0.354 4.354 6 H 0.102 0.898 7 C 0.090 3.910 8 N -0.846 5.846 9 Si 0.850 3.150 10 H -0.279 1.279 11 H -0.258 1.258 12 H -0.278 1.278 13 C 0.531 3.469 14 O -0.589 6.589 15 C -0.150 4.150 16 H 0.112 0.888 17 C -0.130 4.130 18 C 0.023 3.977 19 H 0.115 0.885 20 O -0.361 6.361 21 C 0.034 3.966 22 H 0.209 0.791 23 H 0.092 0.908 24 H 0.096 0.904 25 H 0.276 0.724 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.042 0.958 29 H 0.083 0.917 30 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.302 -1.183 -6.004 6.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.167 4.167 3 C 0.084 3.916 4 N -0.184 5.184 5 C -0.481 4.481 6 H 0.120 0.880 7 C -0.120 4.120 8 N -0.479 5.479 9 Si 0.676 3.324 10 H -0.205 1.205 11 H -0.182 1.182 12 H -0.204 1.204 13 C 0.321 3.679 14 O -0.473 6.473 15 C -0.171 4.171 16 H 0.129 0.871 17 C -0.168 4.168 18 C -0.035 4.035 19 H 0.133 0.867 20 O -0.279 6.279 21 C -0.063 4.063 22 H 0.226 0.774 23 H 0.110 0.890 24 H 0.114 0.886 25 H 0.086 0.914 26 H 0.122 0.878 27 H 0.121 0.879 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.234 -1.198 -6.271 6.503 hybrid contribution -1.352 0.350 -0.290 1.427 sum -0.119 -0.847 -6.561 6.617 Atomic orbital electron populations 1.24696 0.95786 1.01479 1.03565 1.24021 0.95318 0.99236 0.98153 1.18604 0.82926 0.87624 1.02439 1.43612 1.57870 1.11391 1.05487 1.18880 1.31218 0.97114 1.00868 0.88025 1.25501 0.96039 0.95574 0.94888 1.69753 1.37103 1.03274 1.37751 0.87263 0.85072 0.78501 0.81555 1.20545 1.18233 1.20381 1.19612 0.77473 0.87799 0.83039 1.90528 1.56425 1.59702 1.40605 1.22353 0.96990 0.95682 1.02061 0.87084 1.23187 0.94226 1.03427 0.95937 1.22941 1.03711 0.87076 0.89774 0.86705 1.87812 1.87341 1.31237 1.21479 1.22760 0.99429 1.02173 0.81941 0.77356 0.89019 0.88590 0.91383 0.87761 0.87870 0.93915 0.89882 0.93972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.61 19.25 29.55 0.57 -4.04 16 2 C -0.17 -3.56 13.65 -37.12 -0.51 -4.07 16 3 C 0.21 4.35 5.90 -6.83 -0.04 4.31 16 4 N -0.46 -11.26 1.87 -117.93 -0.22 -11.48 16 5 C -0.35 -9.15 9.25 -14.93 -0.14 -9.29 16 6 H 0.10 2.72 8.06 -52.49 -0.42 2.30 16 7 C 0.09 2.38 4.23 -17.47 -0.07 2.30 16 8 N -0.85 -22.89 13.96 55.50 0.77 -22.11 16 9 Si 0.85 21.51 24.39 -169.99 -4.15 17.36 16 10 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.26 -6.84 5.96 56.52 0.34 -6.51 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.53 13.21 5.49 -10.98 -0.06 13.15 16 14 O -0.59 -15.31 16.20 5.55 0.09 -15.22 16 15 C -0.15 -3.51 3.63 -91.77 -0.33 -3.84 16 16 H 0.11 2.80 3.67 -51.93 -0.19 2.61 16 17 C -0.13 -2.64 10.13 -26.69 -0.27 -2.91 16 18 C 0.02 0.46 5.96 -26.69 -0.16 0.30 16 19 H 0.12 2.14 7.74 -51.93 -0.40 1.74 16 20 O -0.36 -6.83 10.96 -35.23 -0.39 -7.21 16 21 C 0.03 0.46 10.88 101.05 1.10 1.56 16 22 H 0.21 3.16 7.80 -54.08 -0.42 2.74 16 23 H 0.09 1.84 7.35 -51.93 -0.38 1.46 16 24 H 0.10 1.78 8.04 -51.93 -0.42 1.36 16 25 H 0.28 7.07 8.31 -40.82 -0.34 6.73 16 26 H 0.10 2.10 8.14 -51.93 -0.42 1.67 16 27 H 0.10 1.96 8.14 -51.93 -0.42 1.54 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 267.59 15.07 4.03 4.03 Total: -1.00 -30.60 267.59 -3.32 -33.92 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -3.55 Total: 3.24 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 0.09 Total: -2.53 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: 0.55 Total: -33.59 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.30 Total: -22.43 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.15 Total: 17.36 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.60 -3.32 -33.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689929409.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.159 kcal (2) G-P(sol) polarization free energy of solvation -30.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds