Wall clock time and date at job start Mon Mar 30 2020 03:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47116 * 172.71629 * 3 2 1 5 5 C 1.37099 * 120.00174 * 89.99532 * 4 3 2 6 6 H 1.07999 * 119.99282 * 53.01321 * 5 4 3 7 7 C 1.38947 * 120.00293 * 233.00489 * 5 4 3 8 8 N 1.31410 * 120.00238 * 203.94429 * 7 5 4 9 9 Si 1.86801 * 119.99865 * 23.94860 * 7 5 4 10 10 H 1.48504 * 109.46912 * 95.26785 * 9 7 5 11 11 H 1.48499 * 109.47047 * 335.26841 * 9 7 5 12 12 H 1.48494 * 109.46990 * 215.26533 * 9 7 5 13 13 C 1.34781 * 119.99882 * 270.00101 * 4 3 2 14 14 O 1.21289 * 120.00446 * 354.25440 * 13 4 3 15 15 C 1.50707 * 119.99894 * 174.25741 * 13 4 3 16 16 H 1.08999 * 115.54771 * 296.70696 * 15 13 4 17 17 C 1.53001 * 117.49729 * 82.37606 * 15 13 4 18 18 C 1.52999 * 117.49789 * 151.03471 * 15 13 4 19 19 H 1.09005 * 117.50013 * 0.02562 * 18 15 13 20 20 O 1.42896 * 117.49935 * 145.02024 * 18 15 13 21 21 C 1.42903 * 114.00439 * 210.00390 * 20 18 15 22 22 H 4.40643 * 5.51383 * 179.97438 * 4 1 2 23 23 H 1.09005 * 109.47351 * 52.71519 * 3 2 1 24 24 H 1.09000 * 109.47041 * 292.71738 * 3 2 1 25 25 H 0.96996 * 120.00507 * 180.02562 * 8 7 5 26 26 H 1.09003 * 117.49412 * 214.97585 * 17 15 13 27 27 H 1.08999 * 117.50127 * 0.02562 * 17 15 13 28 28 H 1.09002 * 109.47363 * 59.99483 * 21 20 18 29 29 H 1.08995 * 109.47122 * 179.97438 * 21 20 18 30 30 H 1.09001 * 109.46400 * 299.99957 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3709 -0.1751 5 6 3.3618 2.1627 0.9207 6 1 3.9938 1.8076 1.7212 7 6 2.7799 3.4219 1.0012 8 7 3.3245 4.3504 1.7550 9 14 1.2235 3.7949 0.0380 10 1 0.0398 3.5881 0.9106 11 1 1.1381 2.8883 -1.1351 12 1 1.2552 5.2048 -0.4272 13 6 3.3581 1.8533 -1.4135 14 8 3.2570 1.1228 -2.3765 15 6 3.7348 3.3003 -1.6017 16 1 2.9815 4.0259 -1.2948 17 6 5.2036 3.6796 -1.4026 18 6 4.6039 3.6525 -2.8107 19 1 4.9029 2.8377 -3.4701 20 8 4.3663 4.9078 -3.4507 21 6 4.6565 4.9110 -4.8500 22 1 -1.0502 -0.0005 -0.0001 23 1 3.0097 -0.6217 -0.8177 24 1 3.0095 -0.3960 0.9479 25 1 2.9182 5.2293 1.8115 26 1 5.4166 4.6550 -0.9650 27 1 5.8976 2.8825 -1.1358 28 1 4.0333 4.1709 -5.3520 29 1 4.4499 5.8989 -5.2616 30 1 5.7073 4.6654 -5.0036 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689929409.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:49 Heat of formation + Delta-G solvation = 4.053234 kcal Electronic energy + Delta-G solvation = -15509.825771 eV Core-core repulsion = 12887.222189 eV Total energy + Delta-G solvation = -2622.603583 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 2.90 seconds Orbital eigenvalues (eV) -41.19777 -39.11780 -36.95537 -35.93780 -34.51665 -33.33836 -28.94480 -27.56596 -26.56433 -24.64198 -23.01682 -21.17800 -19.72192 -19.22956 -17.81781 -17.47681 -17.13912 -16.20390 -16.05355 -15.93520 -15.82053 -14.83976 -14.57110 -14.54281 -13.91256 -13.72544 -13.36545 -13.00908 -12.69686 -12.35930 -12.27194 -11.98912 -11.67985 -11.38008 -11.14953 -11.03037 -10.62123 -10.18819 -9.69909 -8.57971 -6.30073 1.11064 1.20049 1.29821 1.51675 1.80671 1.90545 2.11469 2.36609 2.74456 2.86236 3.13003 3.60360 3.78929 3.92773 4.12068 4.21817 4.44195 4.54451 4.59634 4.61192 4.66308 4.79766 4.91219 5.04857 5.05047 5.66115 5.73387 6.18265 6.35387 6.67634 6.91964 7.23632 7.67992 8.54222 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.025309 B = 0.012343 C = 0.010499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.061221 B = 2268.026739 C = 2666.169435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.218 4.218 3 C 0.203 3.797 4 N -0.469 5.469 5 C -0.347 4.347 6 H 0.090 0.910 7 C 0.072 3.928 8 N -0.869 5.869 9 Si 0.887 3.113 10 H -0.277 1.277 11 H -0.277 1.277 12 H -0.277 1.277 13 C 0.526 3.474 14 O -0.606 6.606 15 C -0.188 4.188 16 H 0.091 0.909 17 C -0.120 4.120 18 C 0.049 3.951 19 H 0.129 0.871 20 O -0.383 6.383 21 C 0.023 3.977 22 H 0.248 0.752 23 H 0.098 0.902 24 H 0.116 0.884 25 H 0.280 0.720 26 H 0.103 0.897 27 H 0.114 0.886 28 H 0.045 0.955 29 H 0.108 0.892 30 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.062 -1.244 -6.799 6.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.220 4.220 3 C 0.081 3.919 4 N -0.189 5.189 5 C -0.474 4.474 6 H 0.107 0.893 7 C -0.136 4.136 8 N -0.503 5.503 9 Si 0.714 3.286 10 H -0.204 1.204 11 H -0.202 1.202 12 H -0.203 1.203 13 C 0.317 3.683 14 O -0.492 6.492 15 C -0.209 4.209 16 H 0.109 0.891 17 C -0.158 4.158 18 C -0.009 4.009 19 H 0.146 0.854 20 O -0.302 6.302 21 C -0.072 4.072 22 H 0.264 0.736 23 H 0.116 0.884 24 H 0.134 0.866 25 H 0.090 0.910 26 H 0.121 0.879 27 H 0.132 0.868 28 H 0.064 0.936 29 H 0.126 0.874 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.990 -1.258 -7.061 7.240 hybrid contribution -1.293 0.341 -0.100 1.341 sum -0.303 -0.918 -7.162 7.226 Atomic orbital electron populations 1.25673 0.96814 0.99022 1.01504 1.24292 0.96086 1.01415 1.00172 1.18720 0.83478 0.85866 1.03788 1.43693 1.57897 1.12388 1.04941 1.18755 1.30758 0.97333 1.00580 0.89253 1.25713 0.96987 0.95648 0.95246 1.69777 1.37890 1.03709 1.38971 0.86711 0.83847 0.77888 0.80118 1.20388 1.20220 1.20304 1.19907 0.77093 0.88365 0.82981 1.90494 1.57301 1.60414 1.40975 1.22354 0.98026 0.94385 1.06150 0.89109 1.23206 0.92357 1.03533 0.96676 1.22878 1.00744 0.87829 0.89470 0.85377 1.87787 1.87541 1.30563 1.24261 1.23100 1.00938 1.03951 0.79217 0.73572 0.88435 0.86635 0.91007 0.87898 0.86807 0.93589 0.87412 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -7.75 19.25 74.32 1.43 -6.32 16 2 C -0.22 -9.10 13.65 31.13 0.42 -8.68 16 3 C 0.20 8.41 5.90 84.57 0.50 8.91 16 4 N -0.47 -22.62 1.87 -645.40 -1.20 -23.83 16 5 C -0.35 -17.88 9.25 84.04 0.78 -17.10 16 6 H 0.09 4.79 8.06 -2.91 -0.02 4.77 16 7 C 0.07 3.79 4.23 84.93 0.36 4.15 16 8 N -0.87 -46.85 13.96 21.66 0.30 -46.55 16 9 Si 0.89 44.21 24.39 68.60 1.67 45.89 16 10 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 11 H -0.28 -14.60 5.96 99.48 0.59 -14.01 16 12 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 13 C 0.53 25.98 5.49 87.66 0.48 26.47 16 14 O -0.61 -31.24 16.20 -3.06 -0.05 -31.29 16 15 C -0.19 -8.72 3.63 -11.54 -0.04 -8.77 16 16 H 0.09 4.58 3.67 -2.39 -0.01 4.57 16 17 C -0.12 -4.76 10.13 30.62 0.31 -4.45 16 18 C 0.05 1.89 5.96 30.62 0.18 2.08 16 19 H 0.13 4.53 7.74 -2.38 -0.02 4.51 16 20 O -0.38 -13.83 10.96 -148.98 -1.63 -15.46 16 21 C 0.02 0.58 10.88 113.37 1.23 1.81 16 22 H 0.25 6.54 7.80 -4.41 -0.03 6.51 16 23 H 0.10 3.86 7.35 -2.38 -0.02 3.85 16 24 H 0.12 4.20 8.04 -2.39 -0.02 4.18 16 25 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 26 H 0.10 4.07 8.14 -2.39 -0.02 4.05 16 27 H 0.11 4.20 8.14 -2.39 -0.02 4.19 16 28 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -63.97 267.59 5.76 -58.20 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 1.02 Total: 14.93 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: 5.66 Total: -1.90 kcal Atomic # 7 Polarization: -69.47 SS G_CDS: -0.90 Total: -70.37 kcal Atomic # 8 Polarization: -45.07 SS G_CDS: -1.68 Total: -46.75 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.67 Total: 45.89 kcal Total: -63.97 5.76 -58.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689929409.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.258 kcal (2) G-P(sol) polarization free energy of solvation -63.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.90 seconds