Wall clock time and date at job start Mon Mar 30 2020 03:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13609 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47564 * 201.82116 * 3 2 1 5 5 C 1.37098 * 120.00061 * 263.96229 * 4 3 2 6 6 H 1.08005 * 120.00100 * 200.20888 * 5 4 3 7 7 C 1.38954 * 120.00165 * 20.20006 * 5 4 3 8 8 N 1.31411 * 119.99848 * 21.44016 * 7 5 4 9 9 Si 1.86798 * 120.00068 * 201.44381 * 7 5 4 10 10 H 1.48501 * 109.47089 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47098 * 120.00216 * 9 7 5 12 12 H 1.48496 * 109.47113 * 239.99802 * 9 7 5 13 13 C 1.34774 * 120.00296 * 83.94969 * 4 3 2 14 14 O 1.21290 * 120.00442 * 180.02562 * 13 4 3 15 15 C 1.50704 * 119.99955 * 0.02562 * 13 4 3 16 16 C 1.53777 * 113.61828 * 179.97438 * 15 13 4 17 17 C 1.53779 * 87.08090 * 219.93163 * 16 15 13 18 18 N 1.46907 * 113.61232 * 139.97878 * 17 16 15 19 19 C 1.53774 * 113.69141 * 82.45744 * 15 13 4 20 20 H 1.09006 * 109.47432 * 81.81630 * 3 2 1 21 21 H 1.09003 * 109.47358 * 321.82172 * 3 2 1 22 22 H 0.96996 * 120.00086 * 180.02562 * 8 7 5 23 23 H 1.09004 * 112.84420 * 311.19318 * 15 13 4 24 24 H 1.08991 * 113.61678 * 105.38176 * 16 15 13 25 25 H 1.09002 * 113.60777 * 334.48329 * 16 15 13 26 26 H 1.08994 * 113.61362 * 270.79447 * 17 16 15 27 27 H 1.00900 * 110.99466 * 180.02562 * 18 17 16 28 28 H 1.00899 * 110.99636 * 303.95259 * 18 17 16 29 29 H 1.09004 * 113.61785 * 25.44888 * 19 15 13 30 30 H 1.09001 * 113.61752 * 254.53880 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0959 1.2831 0.5134 5 6 3.4417 2.2834 -0.3580 6 1 4.0906 3.0830 -0.0322 7 6 2.9575 2.2686 -1.6604 8 7 1.8752 1.5825 -1.9512 9 14 3.8453 3.2239 -2.9978 10 1 5.0284 3.9072 -2.4158 11 1 4.2886 2.2888 -4.0628 12 1 2.9251 4.2346 -3.5781 13 6 3.2045 1.4796 1.8423 14 8 3.6079 2.5415 2.2674 15 6 2.8246 0.3799 2.8002 16 6 3.0061 0.7610 4.2789 17 6 3.5365 -0.6654 4.4999 18 7 4.6833 -0.7314 5.4157 19 6 3.9340 -0.6631 3.0147 20 1 2.9715 -0.1455 -1.0172 21 1 2.9717 -0.8070 0.6352 22 1 1.5374 1.5718 -2.8603 23 1 1.8512 -0.0574 2.5779 24 1 2.0682 0.9631 4.7960 25 1 3.7555 1.5356 4.4413 26 1 2.7578 -1.3878 4.7442 27 1 4.9990 -1.6827 5.5318 28 1 5.4346 -0.1378 5.0976 29 1 4.9370 -0.2778 2.8318 30 1 3.7453 -1.6112 2.5111 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703584909.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:25 Heat of formation + Delta-G solvation = 20.741784 kcal Electronic energy + Delta-G solvation = -15366.528622 eV Core-core repulsion = 12776.941460 eV Total energy + Delta-G solvation = -2589.587162 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.78430 -37.48703 -35.69281 -34.29400 -32.05424 -31.46671 -27.49297 -25.89216 -25.34160 -23.57515 -20.01978 -18.65651 -17.90299 -16.74993 -16.26517 -15.85114 -15.06343 -14.64372 -14.16825 -13.82023 -13.35981 -12.98546 -12.57466 -12.30615 -12.18299 -11.87217 -11.63394 -11.34422 -11.19942 -10.77929 -10.66229 -10.56211 -10.39671 -10.33977 -10.18379 -9.26696 -8.72792 -8.39255 -8.02160 -6.50962 -4.01525 3.07459 3.21256 3.27394 3.52856 3.78844 3.97300 4.11234 4.52544 4.75716 4.83205 4.94967 4.99627 5.11285 5.21824 5.24469 5.75488 5.84841 5.90688 6.02145 6.11058 6.23799 6.36133 6.45073 6.66931 7.18451 7.46501 7.49769 7.92926 8.28396 8.73726 9.00538 9.20213 9.75949 10.55494 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.035488 B = 0.008868 C = 0.007745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.809820 B = 3156.509173 C = 3614.490570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.245 3.755 3 C 0.224 3.776 4 N -0.443 5.443 5 C -0.315 4.315 6 H 0.107 0.893 7 C 0.032 3.968 8 N -0.876 5.876 9 Si 0.925 3.075 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.283 1.283 13 C 0.468 3.532 14 O -0.571 6.571 15 C -0.132 4.132 16 C -0.106 4.106 17 C 0.069 3.931 18 N -0.840 5.840 19 C -0.161 4.161 20 H 0.122 0.878 21 H 0.083 0.917 22 H 0.272 0.728 23 H 0.098 0.902 24 H 0.067 0.933 25 H 0.096 0.904 26 H 0.101 0.899 27 H 0.337 0.663 28 H 0.344 0.656 29 H 0.085 0.915 30 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.543 -7.868 5.442 11.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.073 4.073 3 C 0.096 3.904 4 N -0.163 5.163 5 C -0.442 4.442 6 H 0.125 0.875 7 C -0.172 4.172 8 N -0.515 5.515 9 Si 0.752 3.248 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.209 1.209 13 C 0.257 3.743 14 O -0.454 6.454 15 C -0.154 4.154 16 C -0.145 4.145 17 C -0.043 4.043 18 N -0.368 5.368 19 C -0.201 4.201 20 H 0.140 0.860 21 H 0.101 0.899 22 H 0.083 0.917 23 H 0.116 0.884 24 H 0.086 0.914 25 H 0.114 0.886 26 H 0.119 0.881 27 H 0.149 0.851 28 H 0.157 0.843 29 H 0.104 0.896 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.475 -7.057 6.033 9.913 hybrid contribution 1.009 0.083 -1.927 2.176 sum 4.484 -6.974 4.106 9.252 Atomic orbital electron populations 1.80892 1.13588 1.09541 1.11202 1.29318 0.95393 0.91700 0.90923 1.18676 0.81617 0.87238 1.02843 1.43607 1.56693 1.11633 1.04356 1.19741 1.27991 1.05752 0.90747 0.87517 1.25292 0.94846 0.97952 0.99118 1.69854 1.18132 1.42471 1.21035 0.85879 0.79622 0.79160 0.80174 1.19117 1.20479 1.20874 1.19942 0.83330 0.88504 0.82546 1.90527 1.50270 1.27689 1.76891 1.22504 0.99707 0.96864 0.96304 1.22879 1.01922 0.96439 0.93227 1.22889 0.93992 0.98617 0.88791 1.58690 1.11258 1.14091 1.52723 1.23748 0.99132 0.98621 0.98605 0.86011 0.89877 0.91713 0.88354 0.91449 0.88579 0.88145 0.85101 0.84318 0.89637 0.91137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.27 18.54 42.16 0.78 -10.49 16 2 C 0.24 5.42 12.68 -20.76 -0.26 5.16 16 3 C 0.22 4.43 4.87 -6.83 -0.03 4.40 16 4 N -0.44 -10.32 2.60 -117.93 -0.31 -10.63 16 5 C -0.32 -8.16 9.27 -14.93 -0.14 -8.29 16 6 H 0.11 2.92 7.43 -52.48 -0.39 2.53 16 7 C 0.03 0.78 4.84 -17.47 -0.08 0.70 16 8 N -0.88 -22.33 9.58 55.50 0.53 -21.79 16 9 Si 0.93 19.66 29.60 -169.99 -5.03 14.63 16 10 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 11 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 12 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 13 C 0.47 10.60 7.09 -10.98 -0.08 10.52 16 14 O -0.57 -15.01 15.57 5.55 0.09 -14.92 16 15 C -0.13 -2.26 2.83 -90.96 -0.26 -2.51 16 16 C -0.11 -1.68 7.19 -25.92 -0.19 -1.86 16 17 C 0.07 0.86 5.01 -66.92 -0.34 0.53 16 18 N -0.84 -9.32 9.64 -3.99 -0.04 -9.36 16 19 C -0.16 -2.14 6.59 -25.94 -0.17 -2.31 16 20 H 0.12 2.46 6.63 -51.93 -0.34 2.11 16 21 H 0.08 1.28 6.04 -51.93 -0.31 0.96 16 22 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 23 H 0.10 1.66 7.18 -51.93 -0.37 1.29 16 24 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 25 H 0.10 1.69 7.43 -51.93 -0.39 1.31 16 26 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.34 2.96 9.08 -39.29 -0.36 2.61 16 28 H 0.34 3.76 8.84 -39.29 -0.35 3.41 16 29 H 0.09 1.19 7.99 -51.93 -0.41 0.77 16 30 H 0.07 0.80 7.69 -51.93 -0.40 0.40 16 LS Contribution 260.12 15.07 3.92 3.92 Total: -1.00 -30.72 260.12 -4.91 -35.63 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -3.30 Total: 6.70 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -1.55 Total: 6.32 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: 0.97 Total: -52.27 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: 0.09 Total: -14.92 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.03 Total: 14.63 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.72 -4.91 -35.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703584909.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.368 kcal (2) G-P(sol) polarization free energy of solvation -30.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds