Wall clock time and date at job start Mon Mar 30 2020 03:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13609 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47564 * 201.82116 * 3 2 1 5 5 C 1.37098 * 120.00061 * 263.96229 * 4 3 2 6 6 H 1.08005 * 120.00100 * 200.20888 * 5 4 3 7 7 C 1.38954 * 120.00165 * 20.20006 * 5 4 3 8 8 N 1.31411 * 119.99848 * 21.44016 * 7 5 4 9 9 Si 1.86798 * 120.00068 * 201.44381 * 7 5 4 10 10 H 1.48501 * 109.47089 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47098 * 120.00216 * 9 7 5 12 12 H 1.48496 * 109.47113 * 239.99802 * 9 7 5 13 13 C 1.34774 * 120.00296 * 83.94969 * 4 3 2 14 14 O 1.21290 * 120.00442 * 180.02562 * 13 4 3 15 15 C 1.50704 * 119.99955 * 0.02562 * 13 4 3 16 16 C 1.53777 * 113.61828 * 179.97438 * 15 13 4 17 17 C 1.53779 * 87.08090 * 219.93163 * 16 15 13 18 18 N 1.46907 * 113.61232 * 139.97878 * 17 16 15 19 19 C 1.53774 * 113.69141 * 82.45744 * 15 13 4 20 20 H 1.09006 * 109.47432 * 81.81630 * 3 2 1 21 21 H 1.09003 * 109.47358 * 321.82172 * 3 2 1 22 22 H 0.96996 * 120.00086 * 180.02562 * 8 7 5 23 23 H 1.09004 * 112.84420 * 311.19318 * 15 13 4 24 24 H 1.08991 * 113.61678 * 105.38176 * 16 15 13 25 25 H 1.09002 * 113.60777 * 334.48329 * 16 15 13 26 26 H 1.08994 * 113.61362 * 270.79447 * 17 16 15 27 27 H 1.00900 * 110.99466 * 180.02562 * 18 17 16 28 28 H 1.00899 * 110.99636 * 303.95259 * 18 17 16 29 29 H 1.09004 * 113.61785 * 25.44888 * 19 15 13 30 30 H 1.09001 * 113.61752 * 254.53880 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0959 1.2831 0.5134 5 6 3.4417 2.2834 -0.3580 6 1 4.0906 3.0830 -0.0322 7 6 2.9575 2.2686 -1.6604 8 7 1.8752 1.5825 -1.9512 9 14 3.8453 3.2239 -2.9978 10 1 5.0284 3.9072 -2.4158 11 1 4.2886 2.2888 -4.0628 12 1 2.9251 4.2346 -3.5781 13 6 3.2045 1.4796 1.8423 14 8 3.6079 2.5415 2.2674 15 6 2.8246 0.3799 2.8002 16 6 3.0061 0.7610 4.2789 17 6 3.5365 -0.6654 4.4999 18 7 4.6833 -0.7314 5.4157 19 6 3.9340 -0.6631 3.0147 20 1 2.9715 -0.1455 -1.0172 21 1 2.9717 -0.8070 0.6352 22 1 1.5374 1.5718 -2.8603 23 1 1.8512 -0.0574 2.5779 24 1 2.0682 0.9631 4.7960 25 1 3.7555 1.5356 4.4413 26 1 2.7578 -1.3878 4.7442 27 1 4.9990 -1.6827 5.5318 28 1 5.4346 -0.1378 5.0976 29 1 4.9370 -0.2778 2.8318 30 1 3.7453 -1.6112 2.5111 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703584909.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:24 Heat of formation + Delta-G solvation = -1.570373 kcal Electronic energy + Delta-G solvation = -15367.496150 eV Core-core repulsion = 12776.941460 eV Total energy + Delta-G solvation = -2590.554690 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.27426 -38.94226 -37.50207 -36.14158 -33.80413 -32.66129 -29.22709 -27.53439 -26.51349 -25.11516 -21.34240 -20.10334 -19.73924 -18.37043 -17.91142 -17.02637 -16.65969 -16.13318 -15.69137 -15.36315 -14.84282 -14.67840 -14.04628 -13.91449 -13.46735 -13.35662 -13.30779 -13.09981 -12.93601 -12.39844 -12.18268 -12.07704 -11.95835 -11.84506 -11.40832 -11.14029 -10.36701 -9.91280 -9.46108 -8.42332 -5.99534 1.36398 1.46395 1.59011 1.79624 2.05516 2.23563 2.34625 2.97462 3.10741 3.53500 3.60347 3.73193 3.76971 3.98982 4.05993 4.33170 4.56209 4.68723 4.83884 4.84593 4.91584 5.07344 5.15253 5.46639 5.49367 6.04715 6.29038 6.39686 6.72937 6.99014 7.11601 7.35354 7.93830 8.61936 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.035488 B = 0.008868 C = 0.007745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.809820 B = 3156.509173 C = 3614.490570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C 0.256 3.744 3 C 0.226 3.774 4 N -0.455 5.455 5 C -0.344 4.344 6 H 0.079 0.921 7 C 0.005 3.995 8 N -0.893 5.893 9 Si 0.986 3.014 10 H -0.271 1.271 11 H -0.261 1.261 12 H -0.289 1.289 13 C 0.459 3.541 14 O -0.619 6.619 15 C -0.134 4.134 16 C -0.116 4.116 17 C 0.091 3.909 18 N -0.843 5.843 19 C -0.148 4.148 20 H 0.120 0.880 21 H 0.135 0.865 22 H 0.274 0.726 23 H 0.106 0.894 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.124 0.876 27 H 0.354 0.646 28 H 0.344 0.656 29 H 0.078 0.922 30 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.106 -9.852 5.526 12.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.187 5.187 2 C -0.061 4.061 3 C 0.100 3.900 4 N -0.174 5.174 5 C -0.471 4.471 6 H 0.097 0.903 7 C -0.197 4.197 8 N -0.531 5.531 9 Si 0.810 3.190 10 H -0.196 1.196 11 H -0.186 1.186 12 H -0.216 1.216 13 C 0.250 3.750 14 O -0.505 6.505 15 C -0.156 4.156 16 C -0.155 4.155 17 C -0.022 4.022 18 N -0.372 5.372 19 C -0.188 4.188 20 H 0.138 0.862 21 H 0.152 0.848 22 H 0.084 0.916 23 H 0.124 0.876 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.141 0.859 27 H 0.169 0.831 28 H 0.157 0.843 29 H 0.097 0.903 30 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.040 -9.086 6.119 11.676 hybrid contribution 0.824 0.763 -1.909 2.214 sum 4.863 -8.324 4.211 10.520 Atomic orbital electron populations 1.80894 1.14693 1.10624 1.12463 1.29769 0.95840 0.90665 0.89840 1.18987 0.80125 0.87040 1.03879 1.43789 1.56675 1.12371 1.04563 1.19640 1.28808 1.06629 0.92068 0.90275 1.25917 0.95011 0.98604 1.00183 1.69929 1.18614 1.43184 1.21410 0.84987 0.78112 0.78009 0.77863 1.19565 1.18567 1.21560 1.20960 0.81791 0.89253 0.82993 1.90490 1.52151 1.30085 1.77773 1.22553 1.01422 0.96404 0.95238 1.22921 1.01628 0.98364 0.92564 1.22735 0.94723 0.96261 0.88441 1.58624 1.11120 1.15405 1.52079 1.23749 0.97157 0.98342 0.99542 0.86222 0.84764 0.91574 0.87595 0.91345 0.91083 0.85856 0.83148 0.84268 0.90349 0.87879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -23.74 18.54 20.00 0.37 -23.37 16 2 C 0.26 11.04 12.68 89.44 1.13 12.18 16 3 C 0.23 8.57 4.87 84.57 0.41 8.98 16 4 N -0.45 -21.15 2.60 -645.42 -1.68 -22.82 16 5 C -0.34 -18.09 9.27 84.04 0.78 -17.31 16 6 H 0.08 4.52 7.43 -2.91 -0.02 4.50 16 7 C 0.01 0.25 4.84 84.93 0.41 0.66 16 8 N -0.89 -45.02 9.58 21.66 0.21 -44.81 16 9 Si 0.99 40.21 29.60 68.60 2.03 42.24 16 10 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 11 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 12 H -0.29 -12.07 7.11 99.48 0.71 -11.37 16 13 C 0.46 20.92 7.09 87.66 0.62 21.54 16 14 O -0.62 -33.69 15.57 -3.06 -0.05 -33.73 16 15 C -0.13 -4.39 2.83 -11.02 -0.03 -4.42 16 16 C -0.12 -3.55 7.19 31.12 0.22 -3.33 16 17 C 0.09 1.97 5.01 45.43 0.23 2.19 16 18 N -0.84 -16.28 9.64 -166.54 -1.60 -17.88 16 19 C -0.15 -3.45 6.59 31.11 0.21 -3.25 16 20 H 0.12 4.64 6.63 -2.38 -0.02 4.62 16 21 H 0.13 3.64 6.04 -2.39 -0.01 3.63 16 22 H 0.27 13.29 8.31 -92.71 -0.77 12.52 16 23 H 0.11 3.34 7.18 -2.38 -0.02 3.32 16 24 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.07 2.54 7.43 -2.39 -0.02 2.52 16 26 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.35 4.94 9.08 -89.69 -0.81 4.12 16 28 H 0.34 6.83 8.84 -89.69 -0.79 6.04 16 29 H 0.08 1.99 7.99 -2.39 -0.02 1.97 16 30 H 0.10 1.78 7.69 -2.39 -0.02 1.77 16 Total: -1.00 -67.75 260.12 2.84 -64.90 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -0.42 Total: 18.23 kcal Atomic # 6 Polarization: 13.26 SS G_CDS: 3.98 Total: 17.24 kcal Atomic # 7 Polarization: -106.19 SS G_CDS: -2.70 Total: -108.89 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -0.05 Total: -33.73 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.24 kcal Total: -67.75 2.84 -64.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703584909.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.330 kcal (2) G-P(sol) polarization free energy of solvation -67.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds