Wall clock time and date at job start Mon Mar 30 2020 03:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34664 * 126.59120 * 2 1 4 4 N 1.34134 * 108.01786 * 179.81255 * 3 2 1 5 5 C 1.30496 * 109.25675 * 0.37372 * 4 3 2 6 6 N 1.35047 * 108.70161 * 359.62603 * 5 4 3 7 7 C 1.46497 * 126.40169 * 180.20738 * 6 5 4 8 8 C 1.50695 * 109.46894 * 265.02593 * 7 6 5 9 9 O 1.21281 * 120.00529 * 0.02562 * 8 7 6 10 10 N 1.34785 * 119.99867 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00027 * 180.02562 * 10 8 7 12 12 C 1.50695 * 109.47109 * 180.02562 * 11 10 8 13 13 H 1.08007 * 119.99709 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00447 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99623 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00350 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47241 * 59.99969 * 16 14 12 18 18 H 1.48499 * 109.47325 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47074 * 299.99798 * 16 14 12 20 20 H 1.08997 * 109.47445 * 269.96014 * 1 2 3 21 21 H 1.09008 * 109.46455 * 29.95840 * 1 2 3 22 22 H 1.08999 * 109.47529 * 149.95028 * 1 2 3 23 23 H 1.08003 * 125.99562 * 0.07282 * 3 2 1 24 24 H 1.08002 * 125.65353 * 179.89694 * 5 4 3 25 25 H 1.09004 * 109.46648 * 25.02578 * 7 6 5 26 26 H 1.08998 * 109.47362 * 145.02540 * 7 6 5 27 27 H 0.96995 * 119.99675 * 0.02562 * 10 8 7 28 28 H 1.09005 * 109.47110 * 300.00358 * 11 10 8 29 29 H 1.08998 * 109.47144 * 60.00085 * 11 10 8 30 30 H 0.96992 * 120.00101 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0812 0.0000 4 7 3.5812 0.6540 0.0042 5 6 3.5968 -0.6509 -0.0013 6 7 2.3229 -1.0991 -0.0008 7 6 1.8942 -2.5000 -0.0016 8 6 1.6286 -2.9432 -1.4172 9 8 1.7826 -2.1657 -2.3352 10 7 1.2207 -4.2040 -1.6633 11 6 0.9630 -4.6351 -3.0395 12 6 0.5219 -6.0760 -3.0403 13 1 0.4420 -6.6168 -2.1088 14 6 0.2214 -6.7044 -4.2302 15 7 0.3192 -6.0460 -5.3645 16 14 -0.3247 -8.4908 -4.2312 17 1 -1.5665 -8.6293 -3.4288 18 1 -0.5861 -8.9277 -5.6262 19 1 0.7438 -9.3353 -3.6394 20 1 -0.3634 -0.0007 1.0276 21 1 -0.3632 0.8905 -0.5132 22 1 -0.3634 -0.8895 -0.5146 23 1 1.9865 2.1118 0.0011 24 1 4.4818 -1.2699 -0.0013 25 1 2.6787 -3.1202 0.4322 26 1 0.9831 -2.6015 0.5880 27 1 1.0979 -4.8260 -0.9292 28 1 0.1786 -4.0150 -3.4736 29 1 1.8743 -4.5333 -3.6288 30 1 0.1074 -6.4879 -6.2015 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261816160.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:17 Heat of formation + Delta-G solvation = 17.627111 kcal Electronic energy + Delta-G solvation = -14703.574827 eV Core-core repulsion = 12113.852603 eV Total energy + Delta-G solvation = -2589.722224 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 4.09 seconds Orbital eigenvalues (eV) -41.96337 -38.89383 -34.45137 -33.77812 -32.46689 -31.80678 -28.56001 -26.52452 -26.29378 -22.81146 -21.29473 -20.46280 -19.57051 -17.61138 -16.97049 -15.99338 -15.26775 -15.06723 -14.75170 -14.30825 -13.93338 -13.53294 -13.02311 -12.90120 -12.65097 -12.55569 -12.27913 -12.07861 -11.70030 -11.09787 -10.95093 -10.42561 -9.95016 -9.80489 -9.53412 -9.04412 -8.85479 -8.11944 -8.09034 -6.25933 -4.34365 2.13582 2.81653 3.00900 3.18835 3.24146 3.25496 3.34752 3.88088 4.27055 4.72204 4.80841 4.87225 4.98980 5.10299 5.21316 5.25791 5.54467 5.56325 5.88980 5.93810 6.51363 6.90542 7.12256 7.18617 7.31583 7.36789 7.52280 7.84705 8.23135 8.38696 8.61382 8.85370 9.32463 10.84108 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.062459 B = 0.005235 C = 0.005206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.184829 B = 5347.362154 C = 5376.915887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.012 4.012 3 C -0.035 4.035 4 N -0.496 5.496 5 C 0.187 3.813 6 N -0.437 5.437 7 C 0.081 3.919 8 C 0.479 3.521 9 O -0.535 6.535 10 N -0.706 5.706 11 C 0.251 3.749 12 C -0.548 4.548 13 H 0.063 0.937 14 C 0.065 3.935 15 N -0.884 5.884 16 Si 0.906 3.094 17 H -0.275 1.275 18 H -0.284 1.284 19 H -0.275 1.275 20 H 0.069 0.931 21 H 0.081 0.919 22 H 0.065 0.935 23 H 0.166 0.834 24 H 0.202 0.798 25 H 0.120 0.880 26 H 0.115 0.885 27 H 0.392 0.608 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.505 5.562 12.899 14.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.126 4.126 3 C -0.183 4.183 4 N -0.214 5.214 5 C -0.095 4.095 6 N -0.120 5.120 7 C -0.046 4.046 8 C 0.261 3.739 9 O -0.412 6.412 10 N -0.355 5.355 11 C 0.131 3.869 12 C -0.586 4.586 13 H 0.082 0.918 14 C -0.139 4.139 15 N -0.521 5.521 16 Si 0.733 3.267 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.200 1.200 20 H 0.088 0.912 21 H 0.100 0.900 22 H 0.084 0.916 23 H 0.183 0.817 24 H 0.218 0.782 25 H 0.138 0.862 26 H 0.133 0.867 27 H 0.225 0.775 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.239 6.460 11.994 13.679 hybrid contribution -1.014 -1.953 0.123 2.204 sum 0.225 4.507 12.117 12.930 Atomic orbital electron populations 1.20208 0.87519 1.03766 1.02070 1.21203 0.94528 0.86747 1.10152 1.21941 0.88491 0.98195 1.09640 1.70221 1.22453 1.08819 1.19894 1.24810 0.87050 0.91783 1.05837 1.44880 1.07371 1.05614 1.54166 1.21781 1.04038 0.80995 0.97760 1.20540 0.79514 0.83666 0.90190 1.90759 1.51950 1.53014 1.45482 1.46451 1.65765 1.10683 1.12632 1.19154 0.96985 0.94783 0.76028 1.21150 1.48016 0.95866 0.93572 0.91847 1.24957 0.95001 0.98811 0.95157 1.69959 1.47034 1.37138 0.97991 0.86445 0.79163 0.83806 0.77335 1.20018 1.20990 1.20004 0.91210 0.90023 0.91607 0.81691 0.78184 0.86208 0.86748 0.77492 0.95415 0.95390 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 10.08 36.01 0.36 -0.54 16 2 C -0.01 -0.17 6.95 -81.60 -0.57 -0.74 16 3 C -0.04 -0.54 11.79 -17.81 -0.21 -0.75 16 4 N -0.50 -8.29 11.25 -14.66 -0.16 -8.45 16 5 C 0.19 2.78 12.56 -90.37 -1.13 1.65 16 6 N -0.44 -6.37 2.24 -115.28 -0.26 -6.63 16 7 C 0.08 1.00 6.28 -5.20 -0.03 0.97 16 8 C 0.48 8.71 7.90 -10.98 -0.09 8.63 16 9 O -0.53 -12.55 16.43 5.56 0.09 -12.46 16 10 N -0.71 -13.47 5.55 -61.47 -0.34 -13.81 16 11 C 0.25 6.35 5.43 -5.20 -0.03 6.32 16 12 C -0.55 -14.23 9.28 -34.44 -0.32 -14.55 16 13 H 0.06 1.52 7.60 -52.48 -0.40 1.12 16 14 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 15 N -0.88 -25.50 13.29 55.43 0.74 -24.76 16 16 Si 0.91 20.19 29.54 -169.99 -5.02 15.17 16 17 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 20 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 21 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 22 H 0.06 0.84 7.96 -51.93 -0.41 0.43 16 23 H 0.17 2.06 8.06 -52.48 -0.42 1.64 16 24 H 0.20 2.28 8.06 -52.49 -0.42 1.86 16 25 H 0.12 1.06 8.13 -51.93 -0.42 0.64 16 26 H 0.11 1.09 8.02 -51.93 -0.42 0.68 16 27 H 0.39 6.08 8.32 -40.82 -0.34 5.74 16 28 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 272.35 15.07 4.10 4.10 Total: -1.00 -34.27 272.35 -6.63 -40.90 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -3.66 Total: 3.29 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -2.11 Total: 2.65 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: -0.03 Total: -53.65 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.09 Total: -12.46 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -34.27 -6.63 -40.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261816160.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.527 kcal (2) G-P(sol) polarization free energy of solvation -34.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.09 seconds