Wall clock time and date at job start Mon Mar 30 2020 03:38:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.34664 * 126.59120 * 2 1
4 4 N 1.34134 * 108.01786 * 179.81255 * 3 2 1
5 5 C 1.30496 * 109.25675 * 0.37372 * 4 3 2
6 6 N 1.35047 * 108.70161 * 359.62603 * 5 4 3
7 7 C 1.46497 * 126.40169 * 180.20738 * 6 5 4
8 8 C 1.50695 * 109.46894 * 265.02593 * 7 6 5
9 9 O 1.21281 * 120.00529 * 0.02562 * 8 7 6
10 10 N 1.34785 * 119.99867 * 179.97438 * 8 7 6
11 11 C 1.46498 * 120.00027 * 180.02562 * 10 8 7
12 12 C 1.50695 * 109.47109 * 180.02562 * 11 10 8
13 13 H 1.08007 * 119.99709 * 359.97438 * 12 11 10
14 14 C 1.37877 * 120.00447 * 180.02562 * 12 11 10
15 15 N 1.31517 * 119.99623 * 359.97438 * 14 12 11
16 16 Si 1.86797 * 120.00350 * 179.97438 * 14 12 11
17 17 H 1.48501 * 109.47241 * 59.99969 * 16 14 12
18 18 H 1.48499 * 109.47325 * 179.97438 * 16 14 12
19 19 H 1.48499 * 109.47074 * 299.99798 * 16 14 12
20 20 H 1.08997 * 109.47445 * 269.96014 * 1 2 3
21 21 H 1.09008 * 109.46455 * 29.95840 * 1 2 3
22 22 H 1.08999 * 109.47529 * 149.95028 * 1 2 3
23 23 H 1.08003 * 125.99562 * 0.07282 * 3 2 1
24 24 H 1.08002 * 125.65353 * 179.89694 * 5 4 3
25 25 H 1.09004 * 109.46648 * 25.02578 * 7 6 5
26 26 H 1.08998 * 109.47362 * 145.02540 * 7 6 5
27 27 H 0.96995 * 119.99675 * 0.02562 * 10 8 7
28 28 H 1.09005 * 109.47110 * 300.00358 * 11 10 8
29 29 H 1.08998 * 109.47144 * 60.00085 * 11 10 8
30 30 H 0.96992 * 120.00101 * 180.02562 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3097 1.0812 0.0000
4 7 3.5812 0.6540 0.0042
5 6 3.5968 -0.6509 -0.0013
6 7 2.3229 -1.0991 -0.0008
7 6 1.8942 -2.5000 -0.0016
8 6 1.6286 -2.9432 -1.4172
9 8 1.7826 -2.1657 -2.3352
10 7 1.2207 -4.2040 -1.6633
11 6 0.9630 -4.6351 -3.0395
12 6 0.5219 -6.0760 -3.0403
13 1 0.4420 -6.6168 -2.1088
14 6 0.2214 -6.7044 -4.2302
15 7 0.3192 -6.0460 -5.3645
16 14 -0.3247 -8.4908 -4.2312
17 1 -1.5665 -8.6293 -3.4288
18 1 -0.5861 -8.9277 -5.6262
19 1 0.7438 -9.3353 -3.6394
20 1 -0.3634 -0.0007 1.0276
21 1 -0.3632 0.8905 -0.5132
22 1 -0.3634 -0.8895 -0.5146
23 1 1.9865 2.1118 0.0011
24 1 4.4818 -1.2699 -0.0013
25 1 2.6787 -3.1202 0.4322
26 1 0.9831 -2.6015 0.5880
27 1 1.0979 -4.8260 -0.9292
28 1 0.1786 -4.0150 -3.4736
29 1 1.8743 -4.5333 -3.6288
30 1 0.1074 -6.4879 -6.2015
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001261816160.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:38:17
Heat of formation + Delta-G solvation = -6.554500 kcal
Electronic energy + Delta-G solvation = -14704.623420 eV
Core-core repulsion = 12113.852603 eV
Total energy + Delta-G solvation = -2590.770818 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 223.106 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-43.06710 -40.45774 -36.25620 -34.98712 -34.37966 -32.82396 -30.16130 -28.09397
-27.31111 -24.70809 -22.41714 -21.94255 -20.82656 -19.19855 -18.11923 -17.77700
-16.89903 -16.55861 -16.17728 -15.70544 -15.23390 -14.69149 -14.55108 -14.14796
-14.02089 -13.91283 -13.59297 -13.25950 -13.11742 -12.95673 -12.67882 -12.25719
-11.53794 -11.36799 -10.95107 -10.81426 -10.40255 -9.92847 -9.20837 -8.30650
-6.47829 1.00625 1.44007 1.47304 1.55715 1.57439 1.77177 2.20574
2.32872 2.56780 3.04937 3.73207 3.81868 3.85424 3.93587 4.13866
4.27625 4.53563 4.73904 4.86548 5.02567 5.07213 5.19511 5.41892
5.44335 5.61835 5.81282 5.83953 6.23668 6.62649 6.78974 7.11764
7.21002 7.38749 8.81255
Molecular weight = 223.11amu
Principal moments of inertia in cm(-1)
A = 0.062459 B = 0.005235 C = 0.005206
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 448.184829 B = 5347.362154 C = 5376.915887
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 C -0.021 4.021
3 C -0.059 4.059
4 N -0.530 5.530
5 C 0.178 3.822
6 N -0.445 5.445
7 C 0.095 3.905
8 C 0.479 3.521
9 O -0.594 6.594
10 N -0.697 5.697
11 C 0.267 3.733
12 C -0.556 4.556
13 H 0.089 0.911
14 C 0.004 3.996
15 N -0.933 5.933
16 Si 0.984 3.016
17 H -0.261 1.261
18 H -0.289 1.289
19 H -0.261 1.261
20 H 0.099 0.901
21 H 0.089 0.911
22 H 0.051 0.949
23 H 0.181 0.819
24 H 0.229 0.771
25 H 0.166 0.834
26 H 0.153 0.847
27 H 0.414 0.586
28 H -0.014 1.014
29 H -0.014 1.014
30 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.004 3.999 15.333 15.846
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.136 4.136
3 C -0.205 4.205
4 N -0.249 5.249
5 C -0.104 4.104
6 N -0.128 5.128
7 C -0.031 4.031
8 C 0.264 3.736
9 O -0.475 6.475
10 N -0.348 5.348
11 C 0.144 3.856
12 C -0.593 4.593
13 H 0.107 0.893
14 C -0.196 4.196
15 N -0.572 5.572
16 Si 0.808 3.192
17 H -0.185 1.185
18 H -0.215 1.215
19 H -0.185 1.185
20 H 0.118 0.882
21 H 0.107 0.893
22 H 0.070 0.930
23 H 0.199 0.801
24 H 0.245 0.755
25 H 0.183 0.817
26 H 0.170 0.830
27 H 0.251 0.749
28 H 0.004 0.996
29 H 0.004 0.996
30 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 0.735 4.892 14.501 15.321
hybrid contribution -0.832 -1.379 -0.641 1.733
sum -0.096 3.513 13.860 14.299
Atomic orbital electron populations
1.20289 0.85601 1.03421 1.03873 1.21717 0.95869 0.86764 1.09228
1.22361 0.88411 0.99468 1.10258 1.70189 1.23450 1.10113 1.21121
1.25438 0.88162 0.91792 1.04960 1.45070 1.07319 1.06351 1.54045
1.21941 1.07478 0.80405 0.93229 1.21587 0.77285 0.82309 0.92375
1.90741 1.54064 1.54435 1.48223 1.46089 1.66000 1.11927 1.10796
1.18536 0.93618 0.94598 0.78799 1.21596 1.47126 0.95985 0.94637
0.89316 1.26071 0.94890 1.03979 0.94655 1.70134 1.48621 1.39503
0.98893 0.85209 0.79333 0.77475 0.77227 1.18514 1.21455 1.18548
0.88208 0.89267 0.93030 0.80147 0.75457 0.81656 0.82970 0.74924
0.99562 0.99616 0.92288
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -1.57 10.08 71.24 0.72 -0.85 16
2 C -0.02 -0.59 6.95 40.95 0.28 -0.30 16
3 C -0.06 -1.75 11.79 83.52 0.98 -0.77 16
4 N -0.53 -17.41 11.25 -200.31 -2.25 -19.67 16
5 C 0.18 5.04 12.56 180.26 2.26 7.30 16
6 N -0.44 -12.00 2.24 -518.62 -1.16 -13.16 16
7 C 0.10 2.02 6.28 85.63 0.54 2.55 16
8 C 0.48 16.94 7.90 87.65 0.69 17.63 16
9 O -0.59 -28.45 16.43 -3.03 -0.05 -28.50 16
10 N -0.70 -25.95 5.55 -466.79 -2.59 -28.54 16
11 C 0.27 13.93 5.43 85.63 0.46 14.39 16
12 C -0.56 -28.63 9.28 25.60 0.24 -28.39 16
13 H 0.09 4.02 7.60 -2.91 -0.02 3.99 16
14 C 0.00 0.20 5.46 84.65 0.46 0.66 16
15 N -0.93 -55.24 13.29 21.45 0.28 -54.96 16
16 Si 0.98 40.69 29.54 68.60 2.03 42.72 16
17 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16
18 H -0.29 -12.04 7.11 99.48 0.71 -11.34 16
19 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16
20 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16
21 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16
22 H 0.05 1.24 7.96 -2.39 -0.02 1.22 16
23 H 0.18 4.43 8.06 -2.91 -0.02 4.41 16
24 H 0.23 4.69 8.06 -2.91 -0.02 4.66 16
25 H 0.17 2.08 8.13 -2.38 -0.02 2.06 16
26 H 0.15 2.18 8.02 -2.39 -0.02 2.16 16
27 H 0.41 11.69 8.32 -92.71 -0.77 10.92 16
28 H -0.01 -0.81 8.14 -2.38 -0.02 -0.83 16
29 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16
30 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16
Total: -1.00 -78.27 272.35 3.28 -75.00
By element:
Atomic # 1 Polarization: 14.52 SS G_CDS: 0.37 Total: 14.89 kcal
Atomic # 6 Polarization: 5.58 SS G_CDS: 6.65 Total: 12.22 kcal
Atomic # 7 Polarization: -110.61 SS G_CDS: -5.72 Total: -116.33 kcal
Atomic # 8 Polarization: -28.45 SS G_CDS: -0.05 Total: -28.50 kcal
Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal
Total: -78.27 3.28 -75.00 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001261816160.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.442 kcal
(2) G-P(sol) polarization free energy of solvation -78.272 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.830 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.276 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.996 kcal
(6) G-S(sol) free energy of system = (1) + (5) -6.554 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds