Wall clock time and date at job start Mon Mar 30 2020 03:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34664 * 126.59120 * 2 1 4 4 N 1.34134 * 108.01786 * 179.81255 * 3 2 1 5 5 C 1.30496 * 109.25675 * 0.37372 * 4 3 2 6 6 N 1.35047 * 108.70161 * 359.62603 * 5 4 3 7 7 C 1.46497 * 126.40169 * 180.20738 * 6 5 4 8 8 C 1.50695 * 109.46894 * 265.02593 * 7 6 5 9 9 O 1.21281 * 120.00529 * 0.02562 * 8 7 6 10 10 N 1.34785 * 119.99867 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00027 * 180.02562 * 10 8 7 12 12 C 1.50695 * 109.47109 * 180.02562 * 11 10 8 13 13 H 1.08007 * 119.99709 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00447 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99623 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00350 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47241 * 59.99969 * 16 14 12 18 18 H 1.48499 * 109.47325 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47074 * 299.99798 * 16 14 12 20 20 H 1.08997 * 109.47445 * 269.96014 * 1 2 3 21 21 H 1.09008 * 109.46455 * 29.95840 * 1 2 3 22 22 H 1.08999 * 109.47529 * 149.95028 * 1 2 3 23 23 H 1.08003 * 125.99562 * 0.07282 * 3 2 1 24 24 H 1.08002 * 125.65353 * 179.89694 * 5 4 3 25 25 H 1.09004 * 109.46648 * 25.02578 * 7 6 5 26 26 H 1.08998 * 109.47362 * 145.02540 * 7 6 5 27 27 H 0.96995 * 119.99675 * 0.02562 * 10 8 7 28 28 H 1.09005 * 109.47110 * 300.00358 * 11 10 8 29 29 H 1.08998 * 109.47144 * 60.00085 * 11 10 8 30 30 H 0.96992 * 120.00101 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0812 0.0000 4 7 3.5812 0.6540 0.0042 5 6 3.5968 -0.6509 -0.0013 6 7 2.3229 -1.0991 -0.0008 7 6 1.8942 -2.5000 -0.0016 8 6 1.6286 -2.9432 -1.4172 9 8 1.7826 -2.1657 -2.3352 10 7 1.2207 -4.2040 -1.6633 11 6 0.9630 -4.6351 -3.0395 12 6 0.5219 -6.0760 -3.0403 13 1 0.4420 -6.6168 -2.1088 14 6 0.2214 -6.7044 -4.2302 15 7 0.3192 -6.0460 -5.3645 16 14 -0.3247 -8.4908 -4.2312 17 1 -1.5665 -8.6293 -3.4288 18 1 -0.5861 -8.9277 -5.6262 19 1 0.7438 -9.3353 -3.6394 20 1 -0.3634 -0.0007 1.0276 21 1 -0.3632 0.8905 -0.5132 22 1 -0.3634 -0.8895 -0.5146 23 1 1.9865 2.1118 0.0011 24 1 4.4818 -1.2699 -0.0013 25 1 2.6787 -3.1202 0.4322 26 1 0.9831 -2.6015 0.5880 27 1 1.0979 -4.8260 -0.9292 28 1 0.1786 -4.0150 -3.4736 29 1 1.8743 -4.5333 -3.6288 30 1 0.1074 -6.4879 -6.2015 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261816160.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:17 Heat of formation + Delta-G solvation = -6.554500 kcal Electronic energy + Delta-G solvation = -14704.623420 eV Core-core repulsion = 12113.852603 eV Total energy + Delta-G solvation = -2590.770818 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.06710 -40.45774 -36.25620 -34.98712 -34.37966 -32.82396 -30.16130 -28.09397 -27.31111 -24.70809 -22.41714 -21.94255 -20.82656 -19.19855 -18.11923 -17.77700 -16.89903 -16.55861 -16.17728 -15.70544 -15.23390 -14.69149 -14.55108 -14.14796 -14.02089 -13.91283 -13.59297 -13.25950 -13.11742 -12.95673 -12.67882 -12.25719 -11.53794 -11.36799 -10.95107 -10.81426 -10.40255 -9.92847 -9.20837 -8.30650 -6.47829 1.00625 1.44007 1.47304 1.55715 1.57439 1.77177 2.20574 2.32872 2.56780 3.04937 3.73207 3.81868 3.85424 3.93587 4.13866 4.27625 4.53563 4.73904 4.86548 5.02567 5.07213 5.19511 5.41892 5.44335 5.61835 5.81282 5.83953 6.23668 6.62649 6.78974 7.11764 7.21002 7.38749 8.81255 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.062459 B = 0.005235 C = 0.005206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.184829 B = 5347.362154 C = 5376.915887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.021 4.021 3 C -0.059 4.059 4 N -0.530 5.530 5 C 0.178 3.822 6 N -0.445 5.445 7 C 0.095 3.905 8 C 0.479 3.521 9 O -0.594 6.594 10 N -0.697 5.697 11 C 0.267 3.733 12 C -0.556 4.556 13 H 0.089 0.911 14 C 0.004 3.996 15 N -0.933 5.933 16 Si 0.984 3.016 17 H -0.261 1.261 18 H -0.289 1.289 19 H -0.261 1.261 20 H 0.099 0.901 21 H 0.089 0.911 22 H 0.051 0.949 23 H 0.181 0.819 24 H 0.229 0.771 25 H 0.166 0.834 26 H 0.153 0.847 27 H 0.414 0.586 28 H -0.014 1.014 29 H -0.014 1.014 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.004 3.999 15.333 15.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.136 4.136 3 C -0.205 4.205 4 N -0.249 5.249 5 C -0.104 4.104 6 N -0.128 5.128 7 C -0.031 4.031 8 C 0.264 3.736 9 O -0.475 6.475 10 N -0.348 5.348 11 C 0.144 3.856 12 C -0.593 4.593 13 H 0.107 0.893 14 C -0.196 4.196 15 N -0.572 5.572 16 Si 0.808 3.192 17 H -0.185 1.185 18 H -0.215 1.215 19 H -0.185 1.185 20 H 0.118 0.882 21 H 0.107 0.893 22 H 0.070 0.930 23 H 0.199 0.801 24 H 0.245 0.755 25 H 0.183 0.817 26 H 0.170 0.830 27 H 0.251 0.749 28 H 0.004 0.996 29 H 0.004 0.996 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.735 4.892 14.501 15.321 hybrid contribution -0.832 -1.379 -0.641 1.733 sum -0.096 3.513 13.860 14.299 Atomic orbital electron populations 1.20289 0.85601 1.03421 1.03873 1.21717 0.95869 0.86764 1.09228 1.22361 0.88411 0.99468 1.10258 1.70189 1.23450 1.10113 1.21121 1.25438 0.88162 0.91792 1.04960 1.45070 1.07319 1.06351 1.54045 1.21941 1.07478 0.80405 0.93229 1.21587 0.77285 0.82309 0.92375 1.90741 1.54064 1.54435 1.48223 1.46089 1.66000 1.11927 1.10796 1.18536 0.93618 0.94598 0.78799 1.21596 1.47126 0.95985 0.94637 0.89316 1.26071 0.94890 1.03979 0.94655 1.70134 1.48621 1.39503 0.98893 0.85209 0.79333 0.77475 0.77227 1.18514 1.21455 1.18548 0.88208 0.89267 0.93030 0.80147 0.75457 0.81656 0.82970 0.74924 0.99562 0.99616 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.57 10.08 71.24 0.72 -0.85 16 2 C -0.02 -0.59 6.95 40.95 0.28 -0.30 16 3 C -0.06 -1.75 11.79 83.52 0.98 -0.77 16 4 N -0.53 -17.41 11.25 -200.31 -2.25 -19.67 16 5 C 0.18 5.04 12.56 180.26 2.26 7.30 16 6 N -0.44 -12.00 2.24 -518.62 -1.16 -13.16 16 7 C 0.10 2.02 6.28 85.63 0.54 2.55 16 8 C 0.48 16.94 7.90 87.65 0.69 17.63 16 9 O -0.59 -28.45 16.43 -3.03 -0.05 -28.50 16 10 N -0.70 -25.95 5.55 -466.79 -2.59 -28.54 16 11 C 0.27 13.93 5.43 85.63 0.46 14.39 16 12 C -0.56 -28.63 9.28 25.60 0.24 -28.39 16 13 H 0.09 4.02 7.60 -2.91 -0.02 3.99 16 14 C 0.00 0.20 5.46 84.65 0.46 0.66 16 15 N -0.93 -55.24 13.29 21.45 0.28 -54.96 16 16 Si 0.98 40.69 29.54 68.60 2.03 42.72 16 17 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 18 H -0.29 -12.04 7.11 99.48 0.71 -11.34 16 19 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 20 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 21 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 22 H 0.05 1.24 7.96 -2.39 -0.02 1.22 16 23 H 0.18 4.43 8.06 -2.91 -0.02 4.41 16 24 H 0.23 4.69 8.06 -2.91 -0.02 4.66 16 25 H 0.17 2.08 8.13 -2.38 -0.02 2.06 16 26 H 0.15 2.18 8.02 -2.39 -0.02 2.16 16 27 H 0.41 11.69 8.32 -92.71 -0.77 10.92 16 28 H -0.01 -0.81 8.14 -2.38 -0.02 -0.83 16 29 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 30 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -78.27 272.35 3.28 -75.00 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.37 Total: 14.89 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 6.65 Total: 12.22 kcal Atomic # 7 Polarization: -110.61 SS G_CDS: -5.72 Total: -116.33 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -0.05 Total: -28.50 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Total: -78.27 3.28 -75.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261816160.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.442 kcal (2) G-P(sol) polarization free energy of solvation -78.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds