Wall clock time and date at job start Mon Mar 30 2020 03:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46885 * 2 1 4 4 C 1.50704 * 109.47022 * 239.99976 * 2 1 3 5 5 O 1.21295 * 119.99961 * 246.02182 * 4 2 1 6 6 N 1.34779 * 120.00049 * 66.02138 * 4 2 1 7 7 C 1.37092 * 119.99695 * 179.97438 * 6 4 2 8 8 H 1.08000 * 120.00624 * 0.02562 * 7 6 4 9 9 C 1.38951 * 120.00003 * 180.02562 * 7 6 4 10 10 N 1.31405 * 120.00384 * 180.02562 * 9 7 6 11 11 Si 1.86804 * 119.99787 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.46851 * 90.00080 * 11 9 7 13 13 H 1.48497 * 109.47510 * 210.00327 * 11 9 7 14 14 H 1.48503 * 109.47205 * 330.00144 * 11 9 7 15 15 C 1.50699 * 109.46776 * 120.00094 * 2 1 3 16 16 C 1.34666 * 126.59436 * 357.69596 * 15 2 1 17 17 N 1.34134 * 108.01776 * 179.97438 * 16 15 2 18 18 C 1.30497 * 109.25819 * 359.97438 * 17 16 15 19 19 N 1.35044 * 108.70138 * 0.26621 * 18 17 16 20 20 H 0.96996 * 126.39761 * 179.73611 * 19 18 17 21 21 H 1.08994 * 109.47410 * 299.99684 * 1 2 3 22 22 H 1.08999 * 109.47154 * 60.00157 * 1 2 3 23 23 H 1.09004 * 109.47043 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46529 * 179.97438 * 3 2 1 25 25 H 1.08999 * 109.47096 * 299.99878 * 3 2 1 26 26 H 1.08993 * 109.47283 * 60.00261 * 3 2 1 27 27 H 0.96993 * 119.99777 * 359.97438 * 6 4 2 28 28 H 0.97007 * 120.00328 * 180.02562 * 10 9 7 29 29 H 1.07997 * 125.98990 * 359.96623 * 16 15 2 30 30 H 1.07999 * 125.64597 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.6369 -1.7564 -1.1226 6 7 1.8097 -0.1836 -2.4509 7 6 2.2672 -0.8296 -3.5702 8 1 2.8055 -1.7610 -3.4741 9 6 2.0382 -0.2863 -4.8284 10 7 2.4762 -0.9057 -5.9013 11 14 1.1064 1.3242 -4.9947 12 1 2.0652 2.4574 -4.9531 13 1 0.3749 1.3418 -6.2869 14 1 0.1382 1.4537 -3.8762 15 6 2.0322 -0.7104 1.2305 16 6 1.2812 -1.2313 2.2195 17 7 2.1075 -1.7749 3.1256 18 6 3.3419 -1.6112 2.7352 19 7 3.3398 -0.9465 1.5597 20 1 4.1192 -0.6867 1.0440 21 1 -0.3634 0.5137 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1300 1.4424 0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6766 1.9563 0.8899 27 1 1.3259 0.6526 -2.5372 28 1 2.3166 -0.5262 -6.7797 29 1 0.2028 -1.2142 2.2737 30 1 4.2200 -1.9471 3.2669 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321037245.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:23 Heat of formation + Delta-G solvation = -9.876340 kcal Electronic energy + Delta-G solvation = -15418.660715 eV Core-core repulsion = 12827.745852 eV Total energy + Delta-G solvation = -2590.914863 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 3.51 seconds Orbital eigenvalues (eV) -43.03424 -40.52591 -36.26006 -36.05604 -33.71552 -33.23936 -29.61936 -28.18259 -27.15473 -24.44667 -22.57951 -21.72491 -20.95734 -20.33416 -18.50382 -17.50214 -16.89070 -15.89651 -15.79011 -15.52813 -15.03923 -14.89826 -14.73102 -14.36175 -14.18550 -13.63998 -13.16773 -13.00605 -12.94782 -12.58504 -12.39315 -12.18035 -11.98775 -11.55278 -10.98471 -10.85466 -10.37596 -10.29262 -9.25826 -8.45148 -6.06616 1.18187 1.27976 1.32490 1.42320 1.87429 2.19867 2.24278 2.35744 2.89988 3.11025 3.57910 3.90416 3.98007 4.02032 4.21317 4.54668 4.70007 4.71421 4.73895 4.86714 4.98216 5.15375 5.21278 5.42206 5.50661 5.82398 5.91405 6.51776 6.58072 6.82125 7.16185 7.33420 7.87690 8.72163 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.047260 B = 0.008091 C = 0.007478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.326319 B = 3459.912210 C = 3743.247663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.003 3.997 3 C -0.139 4.139 4 C 0.456 3.544 5 O -0.621 6.621 6 N -0.579 5.579 7 C -0.331 4.331 8 H 0.055 0.945 9 C -0.011 4.011 10 N -0.931 5.931 11 Si 0.955 3.045 12 H -0.253 1.253 13 H -0.274 1.274 14 H -0.229 1.229 15 C 0.007 3.993 16 C -0.042 4.042 17 N -0.530 5.530 18 C 0.181 3.819 19 N -0.552 5.552 20 H 0.423 0.577 21 H 0.104 0.896 22 H 0.075 0.925 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.075 0.925 26 H 0.096 0.904 27 H 0.389 0.611 28 H 0.280 0.720 29 H 0.181 0.819 30 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.326 9.804 12.747 16.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.002 4.002 3 C -0.196 4.196 4 C 0.244 3.756 5 O -0.506 6.506 6 N -0.219 5.219 7 C -0.460 4.460 8 H 0.073 0.927 9 C -0.210 4.210 10 N -0.571 5.571 11 Si 0.775 3.225 12 H -0.177 1.177 13 H -0.199 1.199 14 H -0.152 1.152 15 C -0.110 4.110 16 C -0.189 4.189 17 N -0.250 5.250 18 C -0.102 4.102 19 N -0.153 5.153 20 H 0.261 0.739 21 H 0.122 0.878 22 H 0.094 0.906 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.094 0.906 26 H 0.115 0.885 27 H 0.225 0.775 28 H 0.090 0.910 29 H 0.198 0.802 30 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -3.174 8.685 13.335 16.227 hybrid contribution 0.535 0.639 -1.829 2.010 sum -2.638 9.324 11.505 15.042 Atomic orbital electron populations 1.21894 0.89556 1.03139 1.04798 1.19201 0.98745 0.95642 0.86596 1.21953 1.01212 0.91877 1.04586 1.20756 0.83470 0.86519 0.84897 1.90550 1.46619 1.26470 1.86969 1.41975 1.51605 1.23209 1.05073 1.19006 1.35049 1.07124 0.84806 0.92666 1.26090 0.98189 1.02985 0.93728 1.69795 1.46656 1.41558 0.99107 0.85503 0.79506 0.77484 0.80028 1.17744 1.19862 1.15168 1.20737 0.84608 1.07165 0.98509 1.22287 1.00252 1.03557 0.92845 1.70222 1.01137 1.23143 1.30508 1.25599 0.98543 0.98996 0.87109 1.43191 1.08276 1.43931 1.19919 0.73885 0.87764 0.90645 0.92811 0.92945 0.90597 0.88532 0.77495 0.91035 0.80159 0.74233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 7.36 71.98 0.53 -2.86 16 2 C 0.00 0.09 0.86 -53.67 -0.05 0.05 16 3 C -0.14 -3.28 8.30 71.98 0.60 -2.69 16 4 C 0.46 20.09 6.43 87.66 0.56 20.66 16 5 O -0.62 -33.68 15.39 -3.08 -0.05 -33.73 16 6 N -0.58 -26.46 4.93 -306.98 -1.51 -27.97 16 7 C -0.33 -18.95 10.16 84.04 0.85 -18.10 16 8 H 0.06 3.79 7.39 -2.91 -0.02 3.77 16 9 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 10 N -0.93 -55.15 13.96 21.66 0.30 -54.85 16 11 Si 0.96 37.32 27.74 68.60 1.90 39.22 16 12 H -0.25 -9.27 7.11 99.48 0.71 -8.57 16 13 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 14 H -0.23 -7.41 6.52 99.48 0.65 -6.77 16 15 C 0.01 0.24 5.03 40.95 0.21 0.44 16 16 C -0.04 -1.32 10.84 83.52 0.91 -0.42 16 17 N -0.53 -17.15 11.25 -200.31 -2.25 -19.40 16 18 C 0.18 4.92 13.04 180.26 2.35 7.27 16 19 N -0.55 -16.24 5.84 -186.49 -1.09 -17.33 16 20 H 0.42 11.47 8.96 -92.71 -0.83 10.64 16 21 H 0.10 1.86 7.88 -2.39 -0.02 1.84 16 22 H 0.07 1.73 8.00 -2.39 -0.02 1.71 16 23 H 0.05 1.49 8.04 -2.39 -0.02 1.47 16 24 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 25 H 0.08 1.64 7.25 -2.39 -0.02 1.62 16 26 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.39 14.78 4.69 -92.71 -0.43 14.35 16 28 H 0.28 15.14 8.31 -92.70 -0.77 14.37 16 29 H 0.18 4.79 7.33 -2.91 -0.02 4.77 16 30 H 0.24 4.14 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -77.03 259.55 3.58 -73.45 By element: Atomic # 1 Polarization: 36.53 SS G_CDS: -0.15 Total: 36.37 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: 6.43 Total: 4.23 kcal Atomic # 7 Polarization: -115.00 SS G_CDS: -4.55 Total: -119.55 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -0.05 Total: -33.73 kcal Atomic # 14 Polarization: 37.32 SS G_CDS: 1.90 Total: 39.22 kcal Total: -77.03 3.58 -73.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321037245.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.576 kcal (2) G-P(sol) polarization free energy of solvation -77.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.52 seconds