Wall clock time and date at job start Mon Mar 30 2020 03:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.34122 * 125.98844 * 2 1 4 4 C 1.30505 * 109.25388 * 180.02562 * 3 2 1 5 5 N 1.35045 * 108.69945 * 359.76664 * 4 3 2 6 6 H 0.97000 * 126.39827 * 180.26552 * 5 4 3 7 7 C 1.34665 * 125.98630 * 180.02562 * 2 1 3 8 8 C 1.50703 * 126.59360 * 359.95919 * 7 2 1 9 9 C 1.50701 * 109.47064 * 85.00152 * 8 7 2 10 10 O 1.21280 * 119.99781 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99795 * 179.97438 * 9 8 7 12 12 C 1.46497 * 119.99566 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.46835 * 180.02562 * 12 11 9 14 14 H 1.07995 * 120.00280 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99788 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00327 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99743 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46999 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46979 * 120.00025 * 17 15 13 20 20 H 1.48496 * 109.47443 * 239.99733 * 17 15 13 21 21 H 1.08997 * 109.47196 * 269.99651 * 1 2 3 22 22 H 1.09003 * 109.47027 * 29.99485 * 1 2 3 23 23 H 1.09000 * 109.47184 * 149.99442 * 1 2 3 24 24 H 1.07999 * 125.64760 * 180.02562 * 4 3 2 25 25 H 1.09002 * 109.47152 * 325.00244 * 8 7 2 26 26 H 1.09001 * 109.46980 * 205.00345 * 8 7 2 27 27 H 0.96995 * 120.00011 * 0.02562 * 11 9 8 28 28 H 1.09001 * 109.47487 * 300.00114 * 12 11 9 29 29 H 1.09002 * 109.47182 * 60.00342 * 12 11 9 30 30 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2952 1.0852 0.0000 4 6 3.5450 0.7095 -0.0006 5 7 3.5913 -0.6402 0.0043 6 1 4.3913 -1.1887 0.0087 7 6 2.2983 -1.0896 -0.0005 8 6 1.8472 -2.5276 -0.0003 9 6 1.5779 -2.9697 -1.4156 10 8 1.7371 -2.1938 -2.3339 11 7 1.1610 -4.2278 -1.6607 12 6 0.8998 -4.6578 -3.0366 13 6 0.4485 -6.0956 -3.0363 14 1 0.3643 -6.6351 -2.1046 15 6 0.1431 -6.7225 -4.2258 16 7 0.2461 -6.0658 -5.3606 17 14 -0.4156 -8.5050 -4.2256 18 1 -0.4479 -9.0134 -2.8307 19 1 -1.7744 -8.5979 -4.8174 20 1 0.5307 -9.3205 -5.0284 21 1 -0.3633 -0.0001 1.0276 22 1 -0.3633 0.8901 -0.5138 23 1 -0.3633 -0.8899 -0.5139 24 1 4.4004 1.3687 -0.0003 25 1 0.9355 -2.6222 0.5897 26 1 2.6273 -3.1530 0.4336 27 1 1.0341 -4.8484 -0.9262 28 1 0.1196 -4.0325 -3.4708 29 1 1.8116 -4.5629 -3.6262 30 1 0.0309 -6.5067 -6.1974 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001634245796.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:37 Heat of formation + Delta-G solvation = 4.215400 kcal Electronic energy + Delta-G solvation = -14642.434540 eV Core-core repulsion = 12052.130740 eV Total energy + Delta-G solvation = -2590.303800 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.96023 -38.70223 -34.23266 -32.96151 -32.60165 -32.19703 -28.97942 -27.14879 -25.50480 -22.67582 -21.52433 -20.01899 -19.33794 -17.73624 -17.07137 -15.79555 -15.19811 -15.11416 -14.73420 -14.22119 -14.10089 -13.02889 -12.78082 -12.66167 -12.59761 -12.39418 -11.99524 -11.92426 -11.50457 -10.97789 -10.92596 -10.34641 -9.84012 -9.72938 -9.41285 -9.14549 -8.77292 -8.03188 -7.92684 -6.19604 -4.26917 2.13670 3.19985 3.21305 3.25813 3.28628 3.31424 3.32780 4.13636 4.37373 4.66372 4.89259 5.11607 5.16832 5.39652 5.47762 5.51784 5.63595 5.88999 6.14224 6.17939 6.33839 6.91698 7.27057 7.38997 7.48089 7.49565 7.63249 7.93671 8.20659 8.57821 8.74710 9.05813 9.40040 10.90633 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.062304 B = 0.005175 C = 0.005145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.302802 B = 5408.874121 C = 5440.546750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.015 3.985 3 N -0.493 5.493 4 C 0.180 3.820 5 N -0.563 5.563 6 H 0.417 0.583 7 C 0.005 3.995 8 C -0.069 4.069 9 C 0.496 3.504 10 O -0.544 6.544 11 N -0.713 5.713 12 C 0.250 3.750 13 C -0.544 4.544 14 H 0.064 0.936 15 C 0.063 3.937 16 N -0.885 5.885 17 Si 0.904 3.096 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 H 0.064 0.936 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.205 0.795 25 H 0.111 0.889 26 H 0.094 0.906 27 H 0.391 0.609 28 H 0.027 0.973 29 H 0.025 0.975 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.866 6.364 13.093 15.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.114 4.114 3 N -0.213 5.213 4 C -0.103 4.103 5 N -0.166 5.166 6 H 0.254 0.746 7 C -0.111 4.111 8 C -0.111 4.111 9 C 0.279 3.721 10 O -0.422 6.422 11 N -0.362 5.362 12 C 0.129 3.871 13 C -0.582 4.582 14 H 0.082 0.918 15 C -0.140 4.140 16 N -0.523 5.523 17 Si 0.731 3.269 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 H 0.083 0.917 22 H 0.088 0.912 23 H 0.087 0.913 24 H 0.222 0.778 25 H 0.129 0.871 26 H 0.112 0.888 27 H 0.223 0.777 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.622 7.727 12.195 15.159 hybrid contribution 0.521 -2.350 0.129 2.410 sum 5.143 5.377 12.324 14.396 Atomic orbital electron populations 1.20027 0.87899 1.03059 1.01531 1.20388 0.96352 0.87780 1.06872 1.70124 1.00577 1.30790 1.19845 1.24780 0.97297 0.81911 1.06327 1.43102 1.07994 1.08644 1.56909 0.74578 1.20282 0.83922 0.95725 1.11184 1.20125 1.03458 0.90394 0.97082 1.20322 0.78689 0.82949 0.90114 1.90704 1.52400 1.53047 1.46039 1.46457 1.66092 1.11364 1.12243 1.19110 0.96791 0.94674 0.76533 1.21260 1.47142 0.96254 0.93529 0.91807 1.24961 0.95150 0.98705 0.95213 1.69984 1.47421 1.36953 0.97911 0.86360 0.78408 0.83921 0.78212 1.19614 1.20752 1.20812 0.91742 0.91236 0.91253 0.77804 0.87057 0.88773 0.77679 0.95472 0.95665 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.95 10.13 36.01 0.36 -0.59 16 2 C 0.01 0.24 7.09 -82.85 -0.59 -0.35 16 3 N -0.49 -8.01 11.25 -10.87 -0.12 -8.13 16 4 C 0.18 2.28 13.04 -90.37 -1.18 1.10 16 5 N -0.56 -6.92 6.15 -10.30 -0.06 -6.98 16 6 H 0.42 3.71 8.96 -40.82 -0.37 3.35 16 7 C 0.00 0.07 5.73 -81.60 -0.47 -0.40 16 8 C -0.07 -0.93 5.81 -29.03 -0.17 -1.10 16 9 C 0.50 9.53 7.82 -10.98 -0.09 9.44 16 10 O -0.54 -13.11 16.03 5.56 0.09 -13.02 16 11 N -0.71 -14.40 5.55 -61.47 -0.34 -14.74 16 12 C 0.25 6.53 5.43 -5.19 -0.03 6.50 16 13 C -0.54 -14.51 9.28 -34.44 -0.32 -14.83 16 14 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 17 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 18 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.07 1.01 7.89 -51.93 -0.41 0.60 16 24 H 0.21 1.63 8.06 -52.49 -0.42 1.21 16 25 H 0.11 1.23 8.03 -51.93 -0.42 0.82 16 26 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.39 6.58 8.32 -40.82 -0.34 6.25 16 28 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 270.81 15.07 4.08 4.08 Total: -1.00 -35.30 270.81 -6.81 -42.11 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -3.60 Total: 4.94 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -2.57 Total: 1.42 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: 0.21 Total: -55.10 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.09 Total: -13.02 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -35.30 -6.81 -42.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001634245796.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.323 kcal (2) G-P(sol) polarization free energy of solvation -35.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds