Wall clock time and date at job start Mon Mar 30 2020 03:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.34122 * 125.98844 * 2 1 4 4 C 1.30505 * 109.25388 * 180.02562 * 3 2 1 5 5 N 1.35045 * 108.69945 * 359.76664 * 4 3 2 6 6 H 0.97000 * 126.39827 * 180.26552 * 5 4 3 7 7 C 1.34665 * 125.98630 * 180.02562 * 2 1 3 8 8 C 1.50703 * 126.59360 * 359.95919 * 7 2 1 9 9 C 1.50701 * 109.47064 * 85.00152 * 8 7 2 10 10 O 1.21280 * 119.99781 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99795 * 179.97438 * 9 8 7 12 12 C 1.46497 * 119.99566 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.46835 * 180.02562 * 12 11 9 14 14 H 1.07995 * 120.00280 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99788 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00327 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99743 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46999 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46979 * 120.00025 * 17 15 13 20 20 H 1.48496 * 109.47443 * 239.99733 * 17 15 13 21 21 H 1.08997 * 109.47196 * 269.99651 * 1 2 3 22 22 H 1.09003 * 109.47027 * 29.99485 * 1 2 3 23 23 H 1.09000 * 109.47184 * 149.99442 * 1 2 3 24 24 H 1.07999 * 125.64760 * 180.02562 * 4 3 2 25 25 H 1.09002 * 109.47152 * 325.00244 * 8 7 2 26 26 H 1.09001 * 109.46980 * 205.00345 * 8 7 2 27 27 H 0.96995 * 120.00011 * 0.02562 * 11 9 8 28 28 H 1.09001 * 109.47487 * 300.00114 * 12 11 9 29 29 H 1.09002 * 109.47182 * 60.00342 * 12 11 9 30 30 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2952 1.0852 0.0000 4 6 3.5450 0.7095 -0.0006 5 7 3.5913 -0.6402 0.0043 6 1 4.3913 -1.1887 0.0087 7 6 2.2983 -1.0896 -0.0005 8 6 1.8472 -2.5276 -0.0003 9 6 1.5779 -2.9697 -1.4156 10 8 1.7371 -2.1938 -2.3339 11 7 1.1610 -4.2278 -1.6607 12 6 0.8998 -4.6578 -3.0366 13 6 0.4485 -6.0956 -3.0363 14 1 0.3643 -6.6351 -2.1046 15 6 0.1431 -6.7225 -4.2258 16 7 0.2461 -6.0658 -5.3606 17 14 -0.4156 -8.5050 -4.2256 18 1 -0.4479 -9.0134 -2.8307 19 1 -1.7744 -8.5979 -4.8174 20 1 0.5307 -9.3205 -5.0284 21 1 -0.3633 -0.0001 1.0276 22 1 -0.3633 0.8901 -0.5138 23 1 -0.3633 -0.8899 -0.5139 24 1 4.4004 1.3687 -0.0003 25 1 0.9355 -2.6222 0.5897 26 1 2.6273 -3.1530 0.4336 27 1 1.0341 -4.8484 -0.9262 28 1 0.1196 -4.0325 -3.4708 29 1 1.8116 -4.5629 -3.6262 30 1 0.0309 -6.5067 -6.1974 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001634245796.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:36 Heat of formation + Delta-G solvation = -22.408151 kcal Electronic energy + Delta-G solvation = -14643.589023 eV Core-core repulsion = 12052.130740 eV Total energy + Delta-G solvation = -2591.458283 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.00910 -40.34349 -36.14338 -34.37875 -34.01245 -33.59057 -30.33744 -28.88940 -26.73300 -24.59717 -22.61977 -21.59321 -20.53202 -19.11596 -18.50562 -17.54894 -16.98791 -16.49410 -16.09421 -15.76973 -15.39194 -14.49028 -14.22391 -14.11876 -13.95895 -13.70394 -13.62379 -13.06349 -12.98393 -12.86273 -12.72650 -12.21184 -11.45139 -10.95798 -10.90901 -10.81604 -10.68189 -9.82167 -9.13416 -8.29067 -6.45717 1.05484 1.44256 1.45089 1.58639 1.77537 2.14805 2.29512 2.36577 2.74275 3.06356 3.66015 3.86266 4.11948 4.20004 4.43000 4.48241 4.57901 4.85760 5.04313 5.08169 5.13506 5.23588 5.28547 5.49549 5.70187 5.83449 5.85820 6.61644 6.66539 6.92673 7.16310 7.24310 7.52235 8.83405 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.062304 B = 0.005175 C = 0.005145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.302802 B = 5408.874121 C = 5440.546750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.015 4.015 3 N -0.537 5.537 4 C 0.192 3.808 5 N -0.556 5.556 6 H 0.433 0.567 7 C -0.014 4.014 8 C -0.051 4.051 9 C 0.495 3.505 10 O -0.598 6.598 11 N -0.705 5.705 12 C 0.266 3.734 13 C -0.553 4.553 14 H 0.087 0.913 15 C 0.002 3.998 16 N -0.933 5.933 17 Si 0.985 3.015 18 H -0.250 1.250 19 H -0.280 1.280 20 H -0.280 1.280 21 H 0.089 0.911 22 H 0.059 0.941 23 H 0.058 0.942 24 H 0.248 0.752 25 H 0.141 0.859 26 H 0.135 0.865 27 H 0.411 0.589 28 H -0.015 1.015 29 H -0.015 1.015 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.424 5.000 15.376 17.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.143 4.143 3 N -0.258 5.258 4 C -0.093 4.093 5 N -0.160 5.160 6 H 0.273 0.727 7 C -0.130 4.130 8 C -0.092 4.092 9 C 0.282 3.718 10 O -0.479 6.479 11 N -0.356 5.356 12 C 0.143 3.857 13 C -0.591 4.591 14 H 0.105 0.895 15 C -0.197 4.197 16 N -0.572 5.572 17 Si 0.808 3.192 18 H -0.174 1.174 19 H -0.206 1.206 20 H -0.206 1.206 21 H 0.107 0.893 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.264 0.736 25 H 0.159 0.841 26 H 0.153 0.847 27 H 0.247 0.753 28 H 0.003 0.997 29 H 0.003 0.997 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.199 6.339 14.545 16.696 hybrid contribution 0.408 -1.803 -0.589 1.940 sum 5.607 4.536 13.956 15.710 Atomic orbital electron populations 1.20032 0.87491 1.02028 1.02802 1.20796 0.97278 0.88582 1.07626 1.70106 1.02175 1.31584 1.21907 1.25650 0.97539 0.82527 1.03537 1.43118 1.07950 1.08841 1.56069 0.72660 1.20440 0.84812 0.95967 1.11766 1.20093 1.06230 0.90199 0.92664 1.21361 0.76586 0.81602 0.92232 1.90683 1.54341 1.54325 1.48573 1.46156 1.66396 1.12578 1.10449 1.18521 0.93494 0.94521 0.79159 1.21671 1.46547 0.96312 0.94570 0.89501 1.26079 0.94992 1.03960 0.94662 1.70149 1.48792 1.39415 0.98878 0.85110 0.77538 0.77361 0.79194 1.17369 1.20627 1.20595 0.89280 0.92172 0.92310 0.73641 0.84103 0.84702 0.75293 0.99710 0.99706 0.92316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.84 10.13 71.24 0.72 -1.12 16 2 C -0.01 -0.46 7.09 41.39 0.29 -0.17 16 3 N -0.54 -16.94 11.25 -188.31 -2.12 -19.06 16 4 C 0.19 4.44 13.04 180.26 2.35 6.79 16 5 N -0.56 -12.35 6.15 -186.49 -1.15 -13.50 16 6 H 0.43 6.48 8.96 -92.71 -0.83 5.65 16 7 C -0.01 -0.38 5.73 40.95 0.23 -0.14 16 8 C -0.05 -1.24 5.81 29.10 0.17 -1.07 16 9 C 0.50 18.78 7.82 87.66 0.69 19.46 16 10 O -0.60 -29.57 16.03 -3.03 -0.05 -29.62 16 11 N -0.71 -28.18 5.55 -466.78 -2.59 -30.77 16 12 C 0.27 14.37 5.43 85.63 0.46 14.84 16 13 C -0.55 -29.45 9.28 25.60 0.24 -29.21 16 14 H 0.09 4.12 7.60 -2.91 -0.02 4.10 16 15 C 0.00 0.13 5.46 84.66 0.46 0.59 16 16 N -0.93 -56.22 13.29 21.45 0.28 -55.93 16 17 Si 0.98 41.66 29.54 68.60 2.03 43.68 16 18 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 19 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 20 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 21 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 22 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 23 H 0.06 1.72 7.89 -2.39 -0.02 1.70 16 24 H 0.25 3.12 8.06 -2.91 -0.02 3.09 16 25 H 0.14 2.62 8.03 -2.39 -0.02 2.60 16 26 H 0.14 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.41 12.97 8.32 -92.71 -0.77 12.19 16 28 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 29 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 30 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -80.21 270.81 1.59 -78.62 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -0.43 Total: 16.60 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 5.62 Total: 9.98 kcal Atomic # 7 Polarization: -113.69 SS G_CDS: -5.57 Total: -119.26 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -0.05 Total: -29.62 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.68 kcal Total: -80.21 1.59 -78.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001634245796.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.211 kcal (2) G-P(sol) polarization free energy of solvation -80.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds