Wall clock time and date at job start Mon Mar 30 2020 04:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47769 * 2 1 4 4 N 1.46905 * 109.47051 * 120.00144 * 2 1 3 5 5 C 1.46897 * 111.00090 * 274.99618 * 4 2 1 6 6 C 1.50700 * 109.47124 * 179.97438 * 5 4 2 7 7 H 1.07996 * 119.99751 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99742 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00481 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99793 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47320 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.47375 * 120.00168 * 10 8 6 13 13 H 1.48505 * 109.47196 * 239.99852 * 10 8 6 14 14 C 1.50699 * 109.46997 * 239.99854 * 2 1 3 15 15 C 1.38225 * 120.01608 * 265.00329 * 14 2 1 16 16 C 1.38219 * 120.02950 * 179.72497 * 15 14 2 17 17 C 1.38274 * 120.04966 * 0.02562 * 16 15 14 18 18 C 1.38182 * 120.02410 * 0.02562 * 17 16 15 19 19 C 1.38440 * 120.01197 * 84.72905 * 14 2 1 20 20 F 1.35103 * 120.02569 * 0.24883 * 19 14 2 21 21 H 1.09008 * 109.46889 * 300.00241 * 1 2 3 22 22 H 1.09004 * 109.46987 * 59.99716 * 1 2 3 23 23 H 1.08997 * 109.47348 * 180.02562 * 1 2 3 24 24 H 1.00908 * 111.00099 * 151.04221 * 4 2 1 25 25 H 1.08995 * 109.47300 * 300.00280 * 5 4 2 26 26 H 1.09000 * 109.47034 * 59.99688 * 5 4 2 27 27 H 0.96992 * 120.00198 * 180.02562 * 9 8 6 28 28 H 1.07999 * 119.98109 * 359.69825 * 15 14 2 29 29 H 1.07990 * 119.97712 * 180.02562 * 16 15 14 30 30 H 1.07994 * 119.98453 * 179.97438 * 17 16 15 31 31 H 1.07997 * 120.01141 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 1.1995 5 6 2.0825 0.2225 2.3469 6 6 2.5873 -0.5220 3.5560 7 1 2.8369 -1.5699 3.4795 8 6 2.7316 0.1351 4.7595 9 7 2.4281 1.4114 4.8525 10 14 3.3580 -0.7875 6.2581 11 1 3.6266 -2.2015 5.8924 12 1 4.6119 -0.1548 6.7406 13 1 2.3342 -0.7395 7.3327 14 6 2.0323 -0.7104 -1.2304 15 6 2.3610 -2.0516 -1.1687 16 6 2.8164 -2.7049 -2.2985 17 6 2.9441 -2.0176 -3.4915 18 6 2.6170 -0.6766 -3.5554 19 6 2.1592 -0.0215 -2.4245 20 9 1.8377 1.2893 -2.4862 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 2.9173 -1.1207 1.0287 25 1 2.7589 1.0460 2.1182 26 1 1.0872 0.6163 2.5525 27 1 2.5299 1.8737 5.6991 28 1 2.2625 -2.5891 -0.2372 29 1 3.0726 -3.7528 -2.2494 30 1 3.3003 -2.5290 -4.3735 31 1 2.7172 -0.1399 -4.4872 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020199607.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:24 Heat of formation + Delta-G solvation = -28.069527 kcal Electronic energy + Delta-G solvation = -14746.809923 eV Core-core repulsion = 12135.186182 eV Total energy + Delta-G solvation = -2611.623741 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.107 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.73091 -39.14044 -36.01422 -32.93322 -30.85839 -30.47723 -28.74227 -26.16612 -23.53013 -22.71798 -21.45060 -19.91833 -17.57677 -16.56546 -16.25413 -15.59758 -15.46126 -14.65613 -14.45930 -14.07683 -13.70102 -13.26900 -12.87578 -12.36649 -12.29127 -11.97131 -11.60658 -11.54291 -11.43610 -11.02874 -10.82844 -10.57563 -10.33114 -9.88716 -9.19383 -8.83787 -8.53436 -8.47699 -7.38070 -6.03848 -4.06002 1.25144 1.31622 3.30744 3.37941 3.42676 3.69281 4.37171 4.42905 4.80033 4.82350 5.04656 5.17466 5.32284 5.37735 5.49390 5.74204 5.91255 6.03200 6.11176 6.15618 6.31421 6.39591 6.49397 6.60512 6.70571 7.00493 7.25031 7.40008 7.77029 8.11042 8.34810 8.56434 9.03115 9.58914 11.07388 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.041317 B = 0.006216 C = 0.005731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.522355 B = 4503.314858 C = 4884.432731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.118 3.882 3 H 0.048 0.952 4 N -0.682 5.682 5 C 0.193 3.807 6 C -0.514 4.514 7 H 0.063 0.937 8 C 0.055 3.945 9 N -0.897 5.897 10 Si 0.899 3.101 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.284 1.284 14 C -0.108 4.108 15 C -0.077 4.077 16 C -0.132 4.132 17 C -0.103 4.103 18 C -0.159 4.159 19 C 0.097 3.903 20 F -0.139 7.139 21 H 0.064 0.936 22 H 0.045 0.955 23 H 0.059 0.941 24 H 0.330 0.670 25 H -0.013 1.013 26 H 0.031 0.969 27 H 0.261 0.739 28 H 0.146 0.854 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.061 -5.605 -15.213 16.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.008 3.992 3 H 0.066 0.934 4 N -0.313 5.313 5 C 0.066 3.934 6 C -0.552 4.552 7 H 0.081 0.919 8 C -0.146 4.146 9 N -0.537 5.537 10 Si 0.727 3.273 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.210 1.210 14 C -0.109 4.109 15 C -0.096 4.096 16 C -0.151 4.151 17 C -0.121 4.121 18 C -0.178 4.178 19 C 0.077 3.923 20 F -0.118 7.118 21 H 0.083 0.917 22 H 0.064 0.936 23 H 0.078 0.922 24 H 0.148 0.852 25 H 0.005 0.995 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.164 0.836 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.707 -5.640 -14.899 15.947 hybrid contribution 1.062 0.494 0.593 1.313 sum 0.355 -5.146 -14.306 15.208 Atomic orbital electron populations 1.21702 0.93848 1.02021 1.01060 1.20365 0.96060 0.95442 0.87318 0.93392 1.60885 1.32436 1.34679 1.03342 1.19626 0.96714 0.90224 0.86801 1.21199 1.43317 0.96750 0.93958 0.91875 1.24994 0.95658 0.94899 0.99048 1.69972 1.48830 1.09017 1.25854 0.86424 0.78359 0.79931 0.82577 1.19652 1.21110 1.20983 1.20323 1.00773 0.95281 0.94551 1.21146 0.95940 0.93052 0.99420 1.21240 1.00666 1.00346 0.92807 1.20944 0.99517 0.93397 0.98239 1.21054 1.03313 0.95861 0.97561 1.17628 1.01568 0.78390 0.94725 1.91480 1.90450 1.32881 1.96990 0.91748 0.93569 0.92216 0.85210 0.99502 0.95127 0.92937 0.83599 0.85516 0.85513 0.85197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 9.40 37.16 0.35 -1.89 16 2 C 0.12 2.23 2.60 -68.86 -0.18 2.05 16 3 H 0.05 0.99 7.45 -51.93 -0.39 0.60 16 4 N -0.68 -14.59 5.56 -109.22 -0.61 -15.20 16 5 C 0.19 5.09 5.24 -4.98 -0.03 5.06 16 6 C -0.51 -14.54 9.32 -34.44 -0.32 -14.86 16 7 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 10 Si 0.90 21.69 29.54 -169.99 -5.02 16.66 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 14 C -0.11 -1.74 4.93 -104.55 -0.52 -2.26 16 15 C -0.08 -1.10 8.86 -39.59 -0.35 -1.45 16 16 C -0.13 -1.53 10.04 -39.58 -0.40 -1.93 16 17 C -0.10 -1.11 10.04 -39.59 -0.40 -1.51 16 18 C -0.16 -1.95 10.03 -39.51 -0.40 -2.35 16 19 C 0.10 1.46 7.24 -39.42 -0.29 1.18 16 20 F -0.14 -2.26 16.57 2.25 0.04 -2.22 16 21 H 0.06 1.20 7.45 -51.92 -0.39 0.82 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.33 6.75 7.25 -39.29 -0.28 6.47 16 25 H -0.01 -0.36 8.05 -51.93 -0.42 -0.78 16 26 H 0.03 0.87 7.44 -51.93 -0.39 0.48 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.15 2.11 6.96 -52.49 -0.37 1.74 16 29 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 30 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 31 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 270.63 15.07 4.08 4.08 Total: -1.00 -30.15 270.63 -7.28 -37.43 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -3.89 Total: 1.96 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -2.62 Total: -16.47 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 0.13 Total: -41.44 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.04 Total: -2.22 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.15 -7.28 -37.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199607.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.364 kcal (2) G-P(sol) polarization free energy of solvation -30.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds