Wall clock time and date at job start Mon Mar 30 2020 04:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47769 * 2 1 4 4 N 1.46905 * 109.47051 * 120.00144 * 2 1 3 5 5 C 1.46897 * 111.00090 * 274.99618 * 4 2 1 6 6 C 1.50700 * 109.47124 * 179.97438 * 5 4 2 7 7 H 1.07996 * 119.99751 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99742 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00481 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99793 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47320 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.47375 * 120.00168 * 10 8 6 13 13 H 1.48505 * 109.47196 * 239.99852 * 10 8 6 14 14 C 1.50699 * 109.46997 * 239.99854 * 2 1 3 15 15 C 1.38225 * 120.01608 * 265.00329 * 14 2 1 16 16 C 1.38219 * 120.02950 * 179.72497 * 15 14 2 17 17 C 1.38274 * 120.04966 * 0.02562 * 16 15 14 18 18 C 1.38182 * 120.02410 * 0.02562 * 17 16 15 19 19 C 1.38440 * 120.01197 * 84.72905 * 14 2 1 20 20 F 1.35103 * 120.02569 * 0.24883 * 19 14 2 21 21 H 1.09008 * 109.46889 * 300.00241 * 1 2 3 22 22 H 1.09004 * 109.46987 * 59.99716 * 1 2 3 23 23 H 1.08997 * 109.47348 * 180.02562 * 1 2 3 24 24 H 1.00908 * 111.00099 * 151.04221 * 4 2 1 25 25 H 1.08995 * 109.47300 * 300.00280 * 5 4 2 26 26 H 1.09000 * 109.47034 * 59.99688 * 5 4 2 27 27 H 0.96992 * 120.00198 * 180.02562 * 9 8 6 28 28 H 1.07999 * 119.98109 * 359.69825 * 15 14 2 29 29 H 1.07990 * 119.97712 * 180.02562 * 16 15 14 30 30 H 1.07994 * 119.98453 * 179.97438 * 17 16 15 31 31 H 1.07997 * 120.01141 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 1.1995 5 6 2.0825 0.2225 2.3469 6 6 2.5873 -0.5220 3.5560 7 1 2.8369 -1.5699 3.4795 8 6 2.7316 0.1351 4.7595 9 7 2.4281 1.4114 4.8525 10 14 3.3580 -0.7875 6.2581 11 1 3.6266 -2.2015 5.8924 12 1 4.6119 -0.1548 6.7406 13 1 2.3342 -0.7395 7.3327 14 6 2.0323 -0.7104 -1.2304 15 6 2.3610 -2.0516 -1.1687 16 6 2.8164 -2.7049 -2.2985 17 6 2.9441 -2.0176 -3.4915 18 6 2.6170 -0.6766 -3.5554 19 6 2.1592 -0.0215 -2.4245 20 9 1.8377 1.2893 -2.4862 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 2.9173 -1.1207 1.0287 25 1 2.7589 1.0460 2.1182 26 1 1.0872 0.6163 2.5525 27 1 2.5299 1.8737 5.6991 28 1 2.2625 -2.5891 -0.2372 29 1 3.0726 -3.7528 -2.2494 30 1 3.3003 -2.5290 -4.3735 31 1 2.7172 -0.1399 -4.4872 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020199607.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:23 Heat of formation + Delta-G solvation = -46.747990 kcal Electronic energy + Delta-G solvation = -14747.619882 eV Core-core repulsion = 12135.186182 eV Total energy + Delta-G solvation = -2612.433700 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.107 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.91149 -40.27231 -37.57977 -34.97234 -32.49558 -31.49823 -30.09730 -28.17983 -24.95076 -24.08747 -22.97141 -21.36995 -18.94428 -18.33096 -17.46187 -17.04169 -16.68109 -16.49069 -15.99923 -15.24893 -15.02988 -14.87667 -14.26805 -14.05032 -13.82332 -13.40643 -13.15441 -12.99804 -12.86268 -12.65526 -12.51900 -12.10923 -12.08375 -11.63815 -11.27462 -10.69004 -9.87975 -9.60155 -9.25320 -8.24027 -6.35871 0.21044 0.30663 1.41341 1.42199 1.56284 2.39233 2.68507 3.09604 3.28321 3.43523 3.60887 3.94438 4.11666 4.28056 4.39215 4.43307 4.52036 4.75658 4.88455 4.98575 5.05654 5.16511 5.17454 5.24165 5.27688 5.45589 5.51651 5.62508 5.99007 5.99843 6.37564 6.64210 6.84918 7.35293 8.88310 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.041317 B = 0.006216 C = 0.005731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.522355 B = 4503.314858 C = 4884.432731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.119 3.881 3 H 0.020 0.980 4 N -0.671 5.671 5 C 0.208 3.792 6 C -0.534 4.534 7 H 0.069 0.931 8 C -0.001 4.001 9 N -0.936 5.936 10 Si 0.977 3.023 11 H -0.259 1.259 12 H -0.278 1.278 13 H -0.278 1.278 14 C -0.131 4.131 15 C -0.090 4.090 16 C -0.122 4.122 17 C -0.088 4.088 18 C -0.154 4.154 19 C 0.072 3.928 20 F -0.154 7.154 21 H 0.041 0.959 22 H 0.063 0.937 23 H 0.068 0.932 24 H 0.336 0.664 25 H -0.045 1.045 26 H 0.003 0.997 27 H 0.265 0.735 28 H 0.138 0.862 29 H 0.160 0.840 30 H 0.170 0.830 31 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.876 -8.016 -16.562 18.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.009 3.991 3 H 0.038 0.962 4 N -0.303 5.303 5 C 0.081 3.919 6 C -0.572 4.572 7 H 0.087 0.913 8 C -0.199 4.199 9 N -0.577 5.577 10 Si 0.801 3.199 11 H -0.183 1.183 12 H -0.204 1.204 13 H -0.204 1.204 14 C -0.132 4.132 15 C -0.108 4.108 16 C -0.140 4.140 17 C -0.106 4.106 18 C -0.172 4.172 19 C 0.052 3.948 20 F -0.133 7.133 21 H 0.060 0.940 22 H 0.082 0.918 23 H 0.087 0.913 24 H 0.155 0.845 25 H -0.028 1.028 26 H 0.021 0.979 27 H 0.074 0.926 28 H 0.156 0.844 29 H 0.177 0.823 30 H 0.187 0.813 31 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.228 -8.063 -16.273 18.163 hybrid contribution 0.773 1.228 0.892 1.704 sum 1.001 -6.835 -15.381 16.861 Atomic orbital electron populations 1.21635 0.93069 1.02439 1.00797 1.20304 0.96750 0.94199 0.87872 0.96229 1.60767 1.32707 1.33483 1.03317 1.19257 0.94096 0.89968 0.88607 1.21553 1.43633 0.97151 0.94836 0.91279 1.26013 0.95558 0.95763 1.02573 1.70112 1.49725 1.10857 1.26976 0.85218 0.77767 0.78920 0.77971 1.18299 1.20399 1.20384 1.20080 1.03310 0.96247 0.93582 1.21172 0.96882 0.92256 1.00474 1.21610 0.98731 1.01781 0.91888 1.21453 0.97232 0.92605 0.99287 1.21413 1.01836 0.96685 0.97295 1.17933 1.03198 0.78073 0.95590 1.91439 1.90819 1.33941 1.97084 0.93957 0.91814 0.91337 0.84523 1.02774 0.97910 0.92602 0.84405 0.82278 0.81300 0.82723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.41 9.40 71.98 0.68 -3.74 16 2 C 0.12 4.69 2.60 44.17 0.11 4.80 16 3 H 0.02 0.88 7.45 -2.39 -0.02 0.86 16 4 N -0.67 -29.90 5.56 -499.47 -2.78 -32.67 16 5 C 0.21 11.59 5.24 85.56 0.45 12.04 16 6 C -0.53 -30.86 9.32 25.60 0.24 -30.62 16 7 H 0.07 3.83 7.81 -2.91 -0.02 3.80 16 8 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 9 N -0.94 -57.76 13.29 21.45 0.28 -57.47 16 10 Si 0.98 44.56 29.54 68.60 2.03 46.59 16 11 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 12 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 13 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 14 C -0.13 -4.22 4.93 -19.82 -0.10 -4.32 16 15 C -0.09 -2.43 8.86 22.26 0.20 -2.23 16 16 C -0.12 -2.37 10.04 22.27 0.22 -2.15 16 17 C -0.09 -1.50 10.04 22.26 0.22 -1.27 16 18 C -0.15 -3.31 10.03 22.31 0.22 -3.09 16 19 C 0.07 2.12 7.24 22.38 0.16 2.29 16 20 F -0.15 -5.08 16.57 44.97 0.75 -4.34 16 21 H 0.04 1.68 7.45 -2.38 -0.02 1.66 16 22 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 23 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 24 H 0.34 14.16 7.25 -89.69 -0.65 13.51 16 25 H -0.05 -2.76 8.05 -2.39 -0.02 -2.78 16 26 H 0.00 0.17 7.44 -2.39 -0.02 0.15 16 27 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 28 H 0.14 3.89 6.96 -2.91 -0.02 3.87 16 29 H 0.16 2.07 8.06 -2.92 -0.02 2.05 16 30 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 31 H 0.16 2.53 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -67.25 270.63 3.63 -63.62 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 0.48 Total: 12.17 kcal Atomic # 6 Polarization: -30.77 SS G_CDS: 2.87 Total: -27.89 kcal Atomic # 7 Polarization: -87.66 SS G_CDS: -2.49 Total: -90.15 kcal Atomic # 9 Polarization: -5.08 SS G_CDS: 0.75 Total: -4.34 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -67.25 3.63 -63.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199607.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.875 kcal (2) G-P(sol) polarization free energy of solvation -67.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds