Wall clock time and date at job start Mon Mar 30 2020 03:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 111.81243 * 2 1 4 4 C 1.57022 * 112.08642 * 233.16561 * 2 1 3 5 5 H 1.09000 * 116.40612 * 63.72550 * 4 2 1 6 6 C 1.55981 * 100.60735 * 297.40434 * 4 2 1 7 7 C 1.54615 * 104.46191 * 325.66689 * 6 4 2 8 8 C 1.55920 * 104.58739 * 0.33011 * 7 6 4 9 9 C 1.50701 * 115.85187 * 159.96027 * 8 7 6 10 10 H 1.08001 * 120.00022 * 234.76552 * 9 8 7 11 11 C 1.37866 * 119.99889 * 54.76256 * 9 8 7 12 12 N 1.31512 * 120.00346 * 5.20657 * 11 9 8 13 13 Si 1.86799 * 119.99965 * 185.20323 * 11 9 8 14 14 H 1.48498 * 109.47096 * 84.95308 * 13 11 9 15 15 H 1.48497 * 109.47249 * 324.94943 * 13 11 9 16 16 H 1.48503 * 109.47162 * 204.95349 * 13 11 9 17 17 C 1.53520 * 104.56016 * 288.73729 * 8 7 6 18 18 N 1.27958 * 127.32870 * 250.91389 * 17 8 7 19 19 O 1.41600 * 120.00087 * 179.97438 * 18 17 8 20 20 C 1.55960 * 101.01128 * 190.38925 * 4 2 1 21 21 H 1.08996 * 109.46940 * 293.16632 * 1 2 3 22 22 H 1.08998 * 109.46957 * 53.16599 * 1 2 3 23 23 H 1.08995 * 109.47231 * 173.16718 * 1 2 3 24 24 H 1.09005 * 109.47105 * 186.83515 * 3 2 1 25 25 H 1.09003 * 109.47287 * 306.83233 * 3 2 1 26 26 H 1.08996 * 109.47069 * 66.83835 * 3 2 1 27 27 H 1.09003 * 110.43739 * 206.92608 * 6 4 2 28 28 H 1.09000 * 110.54287 * 84.46237 * 6 4 2 29 29 H 1.09001 * 110.41066 * 241.55527 * 7 6 4 30 30 H 1.08997 * 110.41336 * 119.10700 * 7 6 4 31 31 H 0.97000 * 120.00276 * 180.02562 * 12 11 9 32 32 H 0.96704 * 113.99902 * 180.02562 * 19 18 17 33 33 H 1.08998 * 110.35805 * 152.53529 * 20 4 2 34 34 H 1.08998 * 110.36359 * 274.73290 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0985 1.4204 0.0000 4 6 2.1204 -0.8723 -1.1645 5 1 1.9022 -0.5383 -2.1789 6 6 1.5745 -2.2802 -0.7739 7 6 1.5800 -2.2811 0.7723 8 6 2.1201 -0.8718 1.1639 9 6 1.8034 -0.4124 2.5638 10 1 1.3048 0.5324 2.7223 11 6 2.1502 -1.1983 3.6421 12 7 2.8472 -2.2981 3.4573 13 14 1.6302 -0.7009 5.3659 14 1 0.2543 -1.1935 5.6295 15 1 1.6571 0.7792 5.4834 16 1 2.5660 -1.2929 6.3555 17 6 3.6094 -0.9128 0.7938 18 7 4.6072 -0.9455 1.5942 19 8 5.9262 -0.9813 1.0804 20 6 3.6277 -0.9193 -0.7668 21 1 -0.3633 0.4043 0.9448 22 1 -0.3633 0.6161 -0.8225 23 1 -0.3633 -1.0203 -0.1223 24 1 3.1808 1.3786 -0.1223 25 1 1.6615 1.9867 -0.8225 26 1 1.8582 1.9079 0.9448 27 1 2.2298 -3.0624 -1.1572 28 1 0.5608 -2.4155 -1.1509 29 1 2.2422 -3.0603 1.1496 30 1 0.5695 -2.4211 1.1560 31 1 3.0908 -2.8513 4.2159 32 1 6.6129 -1.0048 1.7609 33 1 4.0922 -1.8287 -1.1478 34 1 4.1480 -0.0404 -1.1474 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001462909.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:25 Heat of formation + Delta-G solvation = 4.784761 kcal Electronic energy + Delta-G solvation = -16568.967749 eV Core-core repulsion = 14082.228982 eV Total energy + Delta-G solvation = -2486.738767 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.83095 -35.37309 -32.69869 -31.56886 -30.83071 -28.99206 -27.15484 -25.51923 -23.99455 -22.60759 -19.88119 -18.14048 -17.68926 -16.02598 -15.27809 -14.67389 -14.57357 -14.17216 -13.86282 -13.19465 -12.61349 -12.15784 -11.89422 -11.60245 -11.54642 -11.42971 -11.21050 -10.97551 -10.92849 -10.58981 -10.40555 -10.04470 -9.91309 -9.72398 -9.45558 -9.14292 -8.84777 -8.46008 -8.18724 -8.02786 -5.95880 -4.01591 3.33875 3.40989 3.43187 3.59334 4.26901 4.46793 5.20802 5.29657 5.48124 5.53441 5.78452 5.92368 6.03385 6.16257 6.24341 6.31711 6.38704 6.41447 6.44407 6.55957 6.63544 6.65802 6.76980 6.91955 7.01268 7.12559 7.17202 7.18898 7.54047 7.64993 7.91956 8.04544 8.39097 8.93641 9.26935 9.63690 11.11002 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.024344 B = 0.014296 C = 0.011469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.911162 B = 1958.091814 C = 2440.701158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.069 4.069 3 C -0.127 4.127 4 C -0.100 4.100 5 H 0.086 0.914 6 C -0.126 4.126 7 C -0.103 4.103 8 C 0.159 3.841 9 C -0.505 4.505 10 H 0.062 0.938 11 C 0.081 3.919 12 N -0.856 5.856 13 Si 0.888 3.112 14 H -0.281 1.281 15 H -0.275 1.275 16 H -0.289 1.289 17 C 0.141 3.859 18 N -0.279 5.279 19 O -0.467 6.467 20 C -0.114 4.114 21 H 0.060 0.940 22 H 0.036 0.964 23 H 0.056 0.944 24 H 0.048 0.952 25 H 0.038 0.962 26 H 0.059 0.941 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.258 0.742 32 H 0.386 0.614 33 H 0.063 0.937 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.879 2.065 -6.589 7.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.070 4.070 3 C -0.184 4.184 4 C -0.119 4.119 5 H 0.104 0.896 6 C -0.163 4.163 7 C -0.142 4.142 8 C 0.157 3.843 9 C -0.542 4.542 10 H 0.081 0.919 11 C -0.125 4.125 12 N -0.491 5.491 13 Si 0.716 3.284 14 H -0.207 1.207 15 H -0.200 1.200 16 H -0.215 1.215 17 C -0.055 4.055 18 N -0.024 5.024 19 O -0.363 6.363 20 C -0.154 4.154 21 H 0.079 0.921 22 H 0.055 0.945 23 H 0.075 0.925 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.231 0.769 33 H 0.081 0.919 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.687 1.876 -6.122 6.622 hybrid contribution 0.432 0.028 0.532 0.687 sum -1.254 1.905 -5.590 6.037 Atomic orbital electron populations 1.21559 0.94498 1.01179 1.00720 1.22541 0.94747 0.94123 0.95614 1.21596 1.00126 0.95926 1.00744 1.23562 0.94488 0.96450 0.97404 0.89589 1.22791 0.99213 0.95521 0.98788 1.22519 1.00792 0.99940 0.90957 1.19279 0.81883 0.90580 0.92550 1.20391 1.39861 1.05534 0.88435 0.91937 1.24883 0.93999 0.94994 0.98628 1.69990 1.34751 1.13641 1.30679 0.86683 0.78228 0.78815 0.84636 1.20690 1.20011 1.21465 1.28045 0.96987 0.89728 0.90702 1.76893 0.86456 1.16638 1.22434 1.88305 1.14769 1.96355 1.36895 1.22865 0.96531 1.00702 0.95301 0.92096 0.94468 0.92500 0.93329 0.94324 0.92192 0.93321 0.92797 0.91183 0.92419 0.93173 0.76947 0.91861 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.13 8.49 37.16 0.32 -1.82 16 2 C -0.07 -1.35 0.78 -150.20 -0.12 -1.46 16 3 C -0.13 -2.36 8.54 37.16 0.32 -2.04 16 4 C -0.10 -1.80 4.50 -85.26 -0.38 -2.18 16 5 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 6 C -0.13 -2.30 5.55 -24.29 -0.13 -2.44 16 7 C -0.10 -2.30 4.52 -24.32 -0.11 -2.41 16 8 C 0.16 3.71 0.35 -151.70 -0.05 3.66 16 9 C -0.51 -13.14 8.08 -34.44 -0.28 -13.42 16 10 H 0.06 1.62 7.53 -52.49 -0.39 1.22 16 11 C 0.08 2.15 5.23 -17.82 -0.09 2.06 16 12 N -0.86 -23.70 10.99 55.43 0.61 -23.09 16 13 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 C 0.14 3.41 5.35 -74.71 -0.40 3.01 16 18 N -0.28 -7.16 11.02 37.61 0.41 -6.74 16 19 O -0.47 -10.47 14.69 -11.47 -0.17 -10.64 16 20 C -0.11 -2.30 5.34 -23.50 -0.13 -2.42 16 21 H 0.06 1.11 7.95 -51.93 -0.41 0.70 16 22 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.97 5.40 -51.93 -0.28 0.69 16 24 H 0.05 0.94 5.86 -51.93 -0.30 0.64 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.06 1.17 7.70 -51.93 -0.40 0.77 16 27 H 0.05 0.86 7.83 -51.93 -0.41 0.46 16 28 H 0.05 0.87 7.22 -51.93 -0.37 0.50 16 29 H 0.07 1.76 7.30 -51.93 -0.38 1.38 16 30 H 0.06 1.28 7.56 -51.93 -0.39 0.89 16 31 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.39 6.86 9.28 45.56 0.42 7.28 16 33 H 0.06 1.26 7.82 -51.93 -0.41 0.86 16 34 H 0.06 1.22 7.30 -51.93 -0.38 0.85 16 LS Contribution 265.78 15.07 4.01 4.01 Total: -1.00 -29.24 265.78 -5.34 -34.58 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -4.11 Total: 5.43 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: -1.06 Total: -19.45 kcal Atomic # 7 Polarization: -30.86 SS G_CDS: 1.02 Total: -29.84 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: -0.17 Total: -10.64 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.24 -5.34 -34.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001462909.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.362 kcal (2) G-P(sol) polarization free energy of solvation -29.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds