Wall clock time and date at job start Mon Mar 30 2020 03:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 111.81243 * 2 1 4 4 C 1.57022 * 112.08642 * 233.16561 * 2 1 3 5 5 H 1.09000 * 116.40612 * 63.72550 * 4 2 1 6 6 C 1.55981 * 100.60735 * 297.40434 * 4 2 1 7 7 C 1.54615 * 104.46191 * 325.66689 * 6 4 2 8 8 C 1.55920 * 104.58739 * 0.33011 * 7 6 4 9 9 C 1.50701 * 115.85187 * 159.96027 * 8 7 6 10 10 H 1.08001 * 120.00022 * 234.76552 * 9 8 7 11 11 C 1.37866 * 119.99889 * 54.76256 * 9 8 7 12 12 N 1.31512 * 120.00346 * 5.20657 * 11 9 8 13 13 Si 1.86799 * 119.99965 * 185.20323 * 11 9 8 14 14 H 1.48498 * 109.47096 * 84.95308 * 13 11 9 15 15 H 1.48497 * 109.47249 * 324.94943 * 13 11 9 16 16 H 1.48503 * 109.47162 * 204.95349 * 13 11 9 17 17 C 1.53520 * 104.56016 * 288.73729 * 8 7 6 18 18 N 1.27958 * 127.32870 * 250.91389 * 17 8 7 19 19 O 1.41600 * 120.00087 * 179.97438 * 18 17 8 20 20 C 1.55960 * 101.01128 * 190.38925 * 4 2 1 21 21 H 1.08996 * 109.46940 * 293.16632 * 1 2 3 22 22 H 1.08998 * 109.46957 * 53.16599 * 1 2 3 23 23 H 1.08995 * 109.47231 * 173.16718 * 1 2 3 24 24 H 1.09005 * 109.47105 * 186.83515 * 3 2 1 25 25 H 1.09003 * 109.47287 * 306.83233 * 3 2 1 26 26 H 1.08996 * 109.47069 * 66.83835 * 3 2 1 27 27 H 1.09003 * 110.43739 * 206.92608 * 6 4 2 28 28 H 1.09000 * 110.54287 * 84.46237 * 6 4 2 29 29 H 1.09001 * 110.41066 * 241.55527 * 7 6 4 30 30 H 1.08997 * 110.41336 * 119.10700 * 7 6 4 31 31 H 0.97000 * 120.00276 * 180.02562 * 12 11 9 32 32 H 0.96704 * 113.99902 * 180.02562 * 19 18 17 33 33 H 1.08998 * 110.35805 * 152.53529 * 20 4 2 34 34 H 1.08998 * 110.36359 * 274.73290 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0985 1.4204 0.0000 4 6 2.1204 -0.8723 -1.1645 5 1 1.9022 -0.5383 -2.1789 6 6 1.5745 -2.2802 -0.7739 7 6 1.5800 -2.2811 0.7723 8 6 2.1201 -0.8718 1.1639 9 6 1.8034 -0.4124 2.5638 10 1 1.3048 0.5324 2.7223 11 6 2.1502 -1.1983 3.6421 12 7 2.8472 -2.2981 3.4573 13 14 1.6302 -0.7009 5.3659 14 1 0.2543 -1.1935 5.6295 15 1 1.6571 0.7792 5.4834 16 1 2.5660 -1.2929 6.3555 17 6 3.6094 -0.9128 0.7938 18 7 4.6072 -0.9455 1.5942 19 8 5.9262 -0.9813 1.0804 20 6 3.6277 -0.9193 -0.7668 21 1 -0.3633 0.4043 0.9448 22 1 -0.3633 0.6161 -0.8225 23 1 -0.3633 -1.0203 -0.1223 24 1 3.1808 1.3786 -0.1223 25 1 1.6615 1.9867 -0.8225 26 1 1.8582 1.9079 0.9448 27 1 2.2298 -3.0624 -1.1572 28 1 0.5608 -2.4155 -1.1509 29 1 2.2422 -3.0603 1.1496 30 1 0.5695 -2.4211 1.1560 31 1 3.0908 -2.8513 4.2159 32 1 6.6129 -1.0048 1.7609 33 1 4.0922 -1.8287 -1.1478 34 1 4.1480 -0.0404 -1.1474 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001462909.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:24 Heat of formation + Delta-G solvation = -14.119520 kcal Electronic energy + Delta-G solvation = -16569.787500 eV Core-core repulsion = 14082.228982 eV Total energy + Delta-G solvation = -2487.558518 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.42739 -37.15775 -34.65275 -33.24680 -32.40112 -30.69421 -28.84418 -27.05401 -25.83864 -24.17163 -21.56053 -19.90899 -19.36642 -17.76669 -17.07649 -16.56815 -16.15900 -15.92547 -15.48550 -14.78093 -14.20915 -13.88645 -13.75211 -13.18593 -13.04947 -13.02585 -12.79666 -12.72504 -12.55785 -12.31458 -12.21990 -11.67219 -11.54320 -11.26948 -11.02344 -10.92131 -10.54002 -10.41059 -9.98615 -9.80339 -7.97718 -6.06984 1.43637 1.45849 1.52670 1.79205 2.50208 2.60249 3.31006 3.73831 3.89639 3.96646 4.21063 4.45587 4.56404 4.69097 4.73377 4.78339 4.85985 4.90490 5.05302 5.11047 5.19516 5.22436 5.28351 5.36256 5.41513 5.55025 5.65768 5.72124 5.76831 5.92550 6.00578 6.31253 6.51389 6.93288 7.53367 7.60103 9.07167 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.024344 B = 0.014296 C = 0.011469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.911162 B = 1958.091814 C = 2440.701158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.068 4.068 3 C -0.123 4.123 4 C -0.081 4.081 5 H 0.130 0.870 6 C -0.118 4.118 7 C -0.098 4.098 8 C 0.134 3.866 9 C -0.512 4.512 10 H 0.055 0.945 11 C 0.037 3.963 12 N -0.881 5.881 13 Si 0.938 3.062 14 H -0.273 1.273 15 H -0.274 1.274 16 H -0.295 1.295 17 C 0.127 3.873 18 N -0.326 5.326 19 O -0.465 6.465 20 C -0.110 4.110 21 H 0.043 0.957 22 H 0.071 0.929 23 H 0.059 0.941 24 H 0.034 0.966 25 H 0.074 0.926 26 H 0.040 0.960 27 H 0.053 0.947 28 H 0.084 0.916 29 H 0.029 0.971 30 H 0.048 0.952 31 H 0.252 0.748 32 H 0.401 0.599 33 H 0.063 0.937 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.031 2.899 -8.742 9.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.069 4.069 3 C -0.180 4.180 4 C -0.099 4.099 5 H 0.148 0.852 6 C -0.155 4.155 7 C -0.137 4.137 8 C 0.132 3.868 9 C -0.550 4.550 10 H 0.073 0.927 11 C -0.166 4.166 12 N -0.517 5.517 13 Si 0.765 3.235 14 H -0.198 1.198 15 H -0.199 1.199 16 H -0.221 1.221 17 C -0.068 4.068 18 N -0.072 5.072 19 O -0.366 6.366 20 C -0.150 4.150 21 H 0.062 0.938 22 H 0.090 0.910 23 H 0.078 0.922 24 H 0.053 0.947 25 H 0.093 0.907 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.102 0.898 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.248 0.752 33 H 0.082 0.918 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.852 2.721 -8.271 9.162 hybrid contribution 0.833 -0.211 1.229 1.499 sum -2.019 2.510 -7.042 7.744 Atomic orbital electron populations 1.21540 0.92804 1.02029 1.01268 1.22564 0.96038 0.94031 0.94218 1.21564 0.99421 0.95840 1.01222 1.23639 0.92025 0.95432 0.98815 0.85206 1.22736 1.01281 0.96257 0.95241 1.22363 0.99009 0.98099 0.94277 1.19484 0.82261 0.92233 0.92809 1.20698 1.38916 1.04972 0.90368 0.92665 1.25492 0.94360 0.95223 1.01526 1.70132 1.36227 1.14592 1.30788 0.85902 0.77990 0.78333 0.81283 1.19846 1.19897 1.22091 1.28356 0.96781 0.88441 0.93224 1.76784 0.87853 1.18258 1.24279 1.88243 1.14238 1.96351 1.37734 1.22897 0.98758 1.01121 0.92273 0.93772 0.91034 0.92203 0.94734 0.90686 0.94074 0.92828 0.89779 0.95209 0.93317 0.93926 0.75153 0.91834 0.90855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.75 8.49 71.98 0.61 -3.14 16 2 C -0.07 -2.44 0.78 -49.39 -0.04 -2.48 16 3 C -0.12 -4.27 8.54 71.98 0.61 -3.65 16 4 C -0.08 -2.56 4.50 -7.32 -0.03 -2.59 16 5 H 0.13 3.12 8.14 -2.39 -0.02 3.10 16 6 C -0.12 -3.95 5.55 32.18 0.18 -3.77 16 7 C -0.10 -4.35 4.52 32.15 0.15 -4.21 16 8 C 0.13 6.21 0.35 -50.36 -0.02 6.20 16 9 C -0.51 -27.01 8.08 25.60 0.21 -26.81 16 10 H 0.06 2.90 7.53 -2.91 -0.02 2.88 16 11 C 0.04 1.99 5.23 84.65 0.44 2.43 16 12 N -0.88 -50.42 10.99 21.44 0.24 -50.18 16 13 Si 0.94 43.82 29.54 68.60 2.03 45.85 16 14 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 15 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 16 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 17 C 0.13 6.10 5.35 49.27 0.26 6.37 16 18 N -0.33 -17.04 11.02 -34.80 -0.38 -17.42 16 19 O -0.47 -20.97 14.69 -38.78 -0.57 -21.53 16 20 C -0.11 -4.21 5.34 32.68 0.17 -4.03 16 21 H 0.04 1.52 7.95 -2.39 -0.02 1.50 16 22 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 23 H 0.06 1.82 5.40 -2.39 -0.01 1.81 16 24 H 0.03 1.27 5.86 -2.38 -0.01 1.25 16 25 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.04 1.55 7.70 -2.39 -0.02 1.53 16 27 H 0.05 1.76 7.83 -2.39 -0.02 1.74 16 28 H 0.08 2.35 7.22 -2.39 -0.02 2.33 16 29 H 0.03 1.52 7.30 -2.39 -0.02 1.50 16 30 H 0.05 2.17 7.56 -2.39 -0.02 2.15 16 31 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 32 H 0.40 14.41 9.28 -74.05 -0.69 13.73 16 33 H 0.06 2.41 7.82 -2.39 -0.02 2.39 16 34 H 0.07 2.64 7.30 -2.39 -0.02 2.63 16 Total: -1.00 -64.29 265.78 4.27 -60.02 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 0.41 Total: 18.95 kcal Atomic # 6 Polarization: -38.23 SS G_CDS: 2.55 Total: -35.68 kcal Atomic # 7 Polarization: -67.46 SS G_CDS: -0.15 Total: -67.61 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.57 Total: -21.53 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -64.29 4.27 -60.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001462909.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.902 kcal (2) G-P(sol) polarization free energy of solvation -64.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds