Wall clock time and date at job start Mon Mar 30 2020 03:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34512 * 125.79090 * 2 1 4 4 C 1.41379 * 106.84332 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.58124 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47156 * 145.04254 * 5 4 3 7 7 C 1.53002 * 109.47090 * 265.04331 * 5 4 3 8 8 N 1.46901 * 109.47198 * 25.04647 * 5 4 3 9 9 C 1.46893 * 111.00424 * 154.99875 * 8 5 4 10 10 C 1.50694 * 109.47261 * 179.97438 * 9 8 5 11 11 H 1.07997 * 120.00525 * 0.02562 * 10 9 8 12 12 C 1.37884 * 120.00035 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99840 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99916 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47227 * 60.00151 * 14 12 10 16 16 H 1.48499 * 109.46847 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47421 * 300.00093 * 14 12 10 18 18 C 1.34512 * 106.84086 * 0.02562 * 4 3 2 19 19 C 1.50695 * 125.79226 * 179.97438 * 18 4 3 20 20 O 1.34301 * 125.79037 * 180.02562 * 2 1 3 21 21 H 1.08998 * 109.47520 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47044 * 300.02034 * 1 2 3 23 23 H 1.08997 * 109.47638 * 60.01929 * 1 2 3 24 24 H 1.08007 * 126.58064 * 359.97438 * 3 2 1 25 25 H 1.09002 * 109.46694 * 180.02562 * 7 5 4 26 26 H 1.08996 * 109.46984 * 299.99464 * 7 5 4 27 27 H 1.08996 * 109.46760 * 60.00070 * 7 5 4 28 28 H 1.00904 * 110.99630 * 278.95423 * 8 5 4 29 29 H 1.09004 * 109.47191 * 300.00430 * 9 8 5 30 30 H 1.09001 * 109.47012 * 59.99651 * 9 8 5 31 31 H 0.96998 * 119.99488 * 179.97438 * 13 12 10 32 32 H 1.09004 * 109.47797 * 179.97438 * 19 18 4 33 33 H 1.09006 * 109.47078 * 299.99936 * 19 18 4 34 34 H 1.09005 * 109.47246 * 59.99506 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6320 -0.0006 5 6 4.8732 1.4850 -0.0014 6 1 5.6498 0.9964 0.5871 7 6 5.3635 1.6707 -1.4388 8 7 4.5670 2.7967 0.5849 9 6 5.7748 3.4183 1.1440 10 6 5.4222 4.7592 1.7344 11 1 4.4028 5.1140 1.6984 12 6 6.4010 5.5328 2.3217 13 7 7.6421 5.1001 2.3670 14 14 5.9638 7.1946 3.0541 15 1 4.9571 7.0118 4.1304 16 1 7.1848 7.8231 3.6193 17 1 5.4020 8.0703 1.9946 18 6 3.5814 -0.7122 -0.0015 19 6 4.7705 -1.6379 -0.0030 20 8 2.2924 -1.0894 -0.0005 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5142 0.8898 23 1 -0.3634 0.5135 -0.8901 24 1 1.9665 2.1205 -0.0004 25 1 6.2623 2.2872 -1.4392 26 1 5.5907 0.6974 -1.8737 27 1 4.5869 2.1593 -2.0272 28 1 4.1292 3.4024 -0.0930 29 1 6.1875 2.7756 1.9217 30 1 6.5134 3.5525 0.3538 31 1 8.3307 5.6445 2.7798 32 1 4.4260 -2.6720 -0.0030 33 1 5.3723 -1.4549 -0.8933 34 1 5.3735 -1.4561 0.8867 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000026516472.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:05 Heat of formation + Delta-G solvation = -2.696836 kcal Electronic energy + Delta-G solvation = -15069.153629 eV Core-core repulsion = 12582.090436 eV Total energy + Delta-G solvation = -2487.063193 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.25492 -36.53227 -33.25552 -32.72128 -31.91176 -29.45116 -29.02472 -25.94388 -24.55652 -22.75892 -21.65432 -20.21501 -18.82952 -16.51134 -15.99726 -15.83941 -14.80835 -14.13468 -13.97963 -13.78088 -13.28900 -13.10090 -13.02234 -12.58609 -12.54248 -12.32949 -12.10186 -11.85170 -11.52097 -11.32925 -11.23212 -10.72418 -10.62847 -10.53183 -9.88569 -9.23223 -9.06890 -8.46520 -7.81312 -7.22534 -6.01350 -4.02964 2.03334 3.01968 3.21853 3.34799 3.38455 3.41831 4.44569 4.90697 5.11225 5.17641 5.30235 5.34441 5.46453 5.51130 5.60657 5.61266 5.73674 5.78110 5.81261 5.86258 6.07496 6.15749 6.41879 6.48881 6.56934 6.66909 6.97161 7.29227 7.45998 7.54685 7.81564 8.15999 8.44332 8.65376 9.06144 9.61670 11.09730 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.035481 B = 0.006107 C = 0.005512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.962147 B = 4584.160387 C = 5078.501220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.041 4.041 3 C -0.174 4.174 4 C -0.139 4.139 5 C 0.148 3.852 6 H 0.077 0.923 7 C -0.172 4.172 8 N -0.680 5.680 9 C 0.195 3.805 10 C -0.513 4.513 11 H 0.061 0.939 12 C 0.056 3.944 13 N -0.899 5.899 14 Si 0.899 3.101 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.277 1.277 18 C -0.037 4.037 19 C -0.067 4.067 20 O -0.181 6.181 21 H 0.069 0.931 22 H 0.081 0.919 23 H 0.079 0.921 24 H 0.147 0.853 25 H 0.061 0.939 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.329 0.671 29 H 0.027 0.973 30 H -0.012 1.012 31 H 0.262 0.738 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.954 -11.129 -6.590 15.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.090 4.090 3 C -0.193 4.193 4 C -0.141 4.141 5 C 0.037 3.963 6 H 0.096 0.904 7 C -0.231 4.231 8 N -0.309 5.309 9 C 0.068 3.932 10 C -0.552 4.552 11 H 0.079 0.921 12 C -0.145 4.145 13 N -0.538 5.538 14 Si 0.727 3.273 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.203 1.203 18 C -0.086 4.086 19 C -0.124 4.124 20 O -0.079 6.079 21 H 0.088 0.912 22 H 0.100 0.900 23 H 0.098 0.902 24 H 0.165 0.835 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.146 0.854 29 H 0.045 0.955 30 H 0.006 0.994 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.059 -11.621 -5.901 15.873 hybrid contribution 0.417 1.411 -0.318 1.505 sum -8.642 -10.210 -6.219 14.752 Atomic orbital electron populations 1.20189 0.85657 1.03186 1.03230 1.22246 0.93637 0.84380 1.08771 1.21371 0.92090 0.99247 1.06628 1.20308 0.96065 0.92412 1.05342 1.19799 0.91569 0.91721 0.93210 0.90449 1.22435 1.01513 1.01310 0.97837 1.60658 1.30304 1.02673 1.37294 1.19573 0.85762 0.94031 0.93796 1.21152 0.94933 1.01859 1.37270 0.92072 1.24983 0.94905 0.98431 0.96226 1.69955 1.00795 1.38043 1.45017 0.86546 0.77621 0.83669 0.79470 1.20183 1.21348 1.20293 1.22014 0.83072 0.94248 1.09295 1.20218 0.91614 0.97092 1.03431 1.83881 1.16276 1.34998 1.72781 0.91240 0.90026 0.90213 0.83548 0.92045 0.93140 0.92863 0.85413 0.95522 0.99446 0.92892 0.91223 0.90169 0.89878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.42 36.00 0.38 -0.31 16 2 C -0.04 -0.61 7.32 -35.63 -0.26 -0.87 16 3 C -0.17 -2.92 10.26 -39.70 -0.41 -3.33 16 4 C -0.14 -2.44 5.26 -104.74 -0.55 -2.99 16 5 C 0.15 2.77 2.79 -68.86 -0.19 2.58 16 6 H 0.08 1.50 7.68 -51.93 -0.40 1.10 16 7 C -0.17 -2.82 9.14 37.16 0.34 -2.48 16 8 N -0.68 -15.00 5.82 -109.22 -0.64 -15.63 16 9 C 0.19 5.16 5.24 -4.98 -0.03 5.14 16 10 C -0.51 -14.73 9.32 -34.44 -0.32 -15.05 16 11 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 12 C 0.06 1.61 5.46 -17.81 -0.10 1.51 16 13 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 14 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 C -0.04 -0.58 7.32 -35.63 -0.26 -0.84 16 19 C -0.07 -0.80 10.03 36.00 0.36 -0.44 16 20 O -0.18 -2.90 10.65 5.71 0.06 -2.83 16 21 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 22 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.15 2.39 8.06 -52.48 -0.42 1.97 16 25 H 0.06 1.07 7.45 -51.93 -0.39 0.69 16 26 H 0.05 0.71 8.05 -51.93 -0.42 0.30 16 27 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 28 H 0.33 6.97 8.46 -39.29 -0.33 6.63 16 29 H 0.03 0.77 8.06 -51.93 -0.42 0.35 16 30 H -0.01 -0.34 7.44 -51.93 -0.39 -0.72 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.86 8.05 -51.93 -0.42 0.44 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 291.37 15.07 4.39 4.39 Total: -1.00 -31.55 291.37 -6.77 -38.33 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -5.26 Total: 2.25 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: -1.04 Total: -17.09 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: 0.10 Total: -41.92 kcal Atomic # 8 Polarization: -2.90 SS G_CDS: 0.06 Total: -2.83 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.55 -6.77 -38.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026516472.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.628 kcal (2) G-P(sol) polarization free energy of solvation -31.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds