Wall clock time and date at job start Mon Mar 30 2020 03:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34512 * 125.79090 * 2 1 4 4 C 1.41379 * 106.84332 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.58124 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47156 * 145.04254 * 5 4 3 7 7 C 1.53002 * 109.47090 * 265.04331 * 5 4 3 8 8 N 1.46901 * 109.47198 * 25.04647 * 5 4 3 9 9 C 1.46893 * 111.00424 * 154.99875 * 8 5 4 10 10 C 1.50694 * 109.47261 * 179.97438 * 9 8 5 11 11 H 1.07997 * 120.00525 * 0.02562 * 10 9 8 12 12 C 1.37884 * 120.00035 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99840 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99916 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47227 * 60.00151 * 14 12 10 16 16 H 1.48499 * 109.46847 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47421 * 300.00093 * 14 12 10 18 18 C 1.34512 * 106.84086 * 0.02562 * 4 3 2 19 19 C 1.50695 * 125.79226 * 179.97438 * 18 4 3 20 20 O 1.34301 * 125.79037 * 180.02562 * 2 1 3 21 21 H 1.08998 * 109.47520 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47044 * 300.02034 * 1 2 3 23 23 H 1.08997 * 109.47638 * 60.01929 * 1 2 3 24 24 H 1.08007 * 126.58064 * 359.97438 * 3 2 1 25 25 H 1.09002 * 109.46694 * 180.02562 * 7 5 4 26 26 H 1.08996 * 109.46984 * 299.99464 * 7 5 4 27 27 H 1.08996 * 109.46760 * 60.00070 * 7 5 4 28 28 H 1.00904 * 110.99630 * 278.95423 * 8 5 4 29 29 H 1.09004 * 109.47191 * 300.00430 * 9 8 5 30 30 H 1.09001 * 109.47012 * 59.99651 * 9 8 5 31 31 H 0.96998 * 119.99488 * 179.97438 * 13 12 10 32 32 H 1.09004 * 109.47797 * 179.97438 * 19 18 4 33 33 H 1.09006 * 109.47078 * 299.99936 * 19 18 4 34 34 H 1.09005 * 109.47246 * 59.99506 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6320 -0.0006 5 6 4.8732 1.4850 -0.0014 6 1 5.6498 0.9964 0.5871 7 6 5.3635 1.6707 -1.4388 8 7 4.5670 2.7967 0.5849 9 6 5.7748 3.4183 1.1440 10 6 5.4222 4.7592 1.7344 11 1 4.4028 5.1140 1.6984 12 6 6.4010 5.5328 2.3217 13 7 7.6421 5.1001 2.3670 14 14 5.9638 7.1946 3.0541 15 1 4.9571 7.0118 4.1304 16 1 7.1848 7.8231 3.6193 17 1 5.4020 8.0703 1.9946 18 6 3.5814 -0.7122 -0.0015 19 6 4.7705 -1.6379 -0.0030 20 8 2.2924 -1.0894 -0.0005 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5142 0.8898 23 1 -0.3634 0.5135 -0.8901 24 1 1.9665 2.1205 -0.0004 25 1 6.2623 2.2872 -1.4392 26 1 5.5907 0.6974 -1.8737 27 1 4.5869 2.1593 -2.0272 28 1 4.1292 3.4024 -0.0930 29 1 6.1875 2.7756 1.9217 30 1 6.5134 3.5525 0.3538 31 1 8.3307 5.6445 2.7798 32 1 4.4260 -2.6720 -0.0030 33 1 5.3723 -1.4549 -0.8933 34 1 5.3735 -1.4561 0.8867 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000026516472.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:05 Heat of formation + Delta-G solvation = -22.938489 kcal Electronic energy + Delta-G solvation = -15070.031373 eV Core-core repulsion = 12582.090436 eV Total energy + Delta-G solvation = -2487.940937 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.47675 -38.16986 -35.18031 -33.78642 -33.58875 -30.88587 -30.19320 -27.92550 -25.71390 -24.37766 -23.37478 -21.62314 -20.19904 -18.49023 -17.26910 -17.12788 -16.75371 -15.80298 -15.53420 -15.24738 -14.50798 -14.24136 -14.13323 -14.04307 -13.77195 -13.50965 -13.41490 -13.29732 -13.14907 -12.90924 -12.65346 -12.60970 -12.34547 -12.01821 -11.88881 -11.33034 -10.66953 -10.40378 -9.13089 -8.93985 -8.22225 -6.33353 0.84221 1.40717 1.44413 1.52398 1.73607 2.10231 2.40099 3.10791 3.54218 3.84426 3.97888 4.14885 4.34499 4.35992 4.44526 4.52463 4.66400 4.76209 4.76986 4.81090 4.89963 5.02048 5.05934 5.07882 5.20228 5.29951 5.35115 5.46676 5.62754 5.72332 6.03217 6.32139 6.48266 6.73265 6.89482 7.37348 8.89035 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.035481 B = 0.006107 C = 0.005512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.962147 B = 4584.160387 C = 5078.501220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.033 4.033 3 C -0.204 4.204 4 C -0.167 4.167 5 C 0.150 3.850 6 H 0.064 0.936 7 C -0.162 4.162 8 N -0.680 5.680 9 C 0.212 3.788 10 C -0.537 4.537 11 H 0.062 0.938 12 C 0.002 3.998 13 N -0.933 5.933 14 Si 0.973 3.027 15 H -0.270 1.270 16 H -0.281 1.281 17 H -0.266 1.266 18 C -0.036 4.036 19 C -0.068 4.068 20 O -0.186 6.186 21 H 0.085 0.915 22 H 0.092 0.908 23 H 0.098 0.902 24 H 0.143 0.857 25 H 0.044 0.956 26 H 0.076 0.924 27 H 0.058 0.942 28 H 0.334 0.666 29 H -0.004 1.004 30 H -0.033 1.033 31 H 0.265 0.735 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.348 -11.399 -6.897 16.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.083 4.083 3 C -0.224 4.224 4 C -0.169 4.169 5 C 0.040 3.960 6 H 0.082 0.918 7 C -0.221 4.221 8 N -0.310 5.310 9 C 0.085 3.915 10 C -0.575 4.575 11 H 0.081 0.919 12 C -0.196 4.196 13 N -0.573 5.573 14 Si 0.797 3.203 15 H -0.195 1.195 16 H -0.207 1.207 17 H -0.190 1.190 18 C -0.086 4.086 19 C -0.125 4.125 20 O -0.084 6.084 21 H 0.104 0.896 22 H 0.110 0.890 23 H 0.117 0.883 24 H 0.161 0.839 25 H 0.063 0.937 26 H 0.095 0.905 27 H 0.077 0.923 28 H 0.151 0.849 29 H 0.014 0.986 30 H -0.015 1.015 31 H 0.074 0.926 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.471 -11.910 -6.225 17.036 hybrid contribution 0.823 1.415 -0.238 1.655 sum -9.648 -10.495 -6.463 15.652 Atomic orbital electron populations 1.20402 0.82362 1.04754 1.04653 1.22995 0.95412 0.83463 1.06386 1.21474 0.92323 0.99824 1.08757 1.20246 0.95725 0.93238 1.07725 1.19761 0.92281 0.89897 0.94073 0.91824 1.22313 1.00730 1.02534 0.96524 1.60520 1.28258 1.03837 1.38380 1.19188 0.86775 0.93214 0.92359 1.21512 0.95192 1.02927 1.37916 0.91946 1.25940 0.94650 1.02619 0.96376 1.70084 1.01895 1.39717 1.45630 0.85386 0.77589 0.78519 0.78801 1.19508 1.20656 1.19039 1.22559 0.83932 0.94278 1.07812 1.20383 0.90363 0.97597 1.04122 1.83916 1.16433 1.35403 1.72615 0.89588 0.88951 0.88304 0.83921 0.93705 0.90496 0.92298 0.84875 0.98610 1.01522 0.92593 0.89057 0.88683 0.89880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.18 10.42 71.23 0.74 -0.44 16 2 C -0.03 -0.94 7.32 24.83 0.18 -0.76 16 3 C -0.20 -6.77 10.26 22.19 0.23 -6.54 16 4 C -0.17 -5.83 5.26 -19.94 -0.10 -5.93 16 5 C 0.15 5.71 2.79 44.17 0.12 5.84 16 6 H 0.06 2.55 7.68 -2.39 -0.02 2.54 16 7 C -0.16 -5.30 9.14 71.98 0.66 -4.65 16 8 N -0.68 -30.82 5.82 -499.48 -2.91 -33.72 16 9 C 0.21 11.68 5.24 85.56 0.45 12.13 16 10 C -0.54 -31.34 9.32 25.60 0.24 -31.10 16 11 H 0.06 3.54 7.81 -2.91 -0.02 3.52 16 12 C 0.00 0.14 5.46 84.66 0.46 0.60 16 13 N -0.93 -56.99 13.29 21.45 0.28 -56.70 16 14 Si 0.97 44.84 29.54 68.60 2.03 46.86 16 15 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 16 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 17 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 18 C -0.04 -1.10 7.32 24.83 0.18 -0.92 16 19 C -0.07 -1.52 10.03 71.23 0.71 -0.81 16 20 O -0.19 -5.61 10.65 -2.47 -0.03 -5.64 16 21 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 22 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.14 4.69 8.06 -2.91 -0.02 4.67 16 25 H 0.04 1.59 7.45 -2.39 -0.02 1.57 16 26 H 0.08 2.08 8.05 -2.39 -0.02 2.06 16 27 H 0.06 1.84 8.13 -2.39 -0.02 1.82 16 28 H 0.33 14.45 8.46 -89.69 -0.76 13.69 16 29 H 0.00 -0.25 8.06 -2.38 -0.02 -0.27 16 30 H -0.03 -1.91 7.44 -2.39 -0.02 -1.92 16 31 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 32 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.09 1.83 8.05 -2.38 -0.02 1.81 16 34 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 Total: -1.00 -68.08 291.37 3.57 -64.51 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 0.32 Total: 17.26 kcal Atomic # 6 Polarization: -36.44 SS G_CDS: 3.87 Total: -32.57 kcal Atomic # 7 Polarization: -87.80 SS G_CDS: -2.62 Total: -90.42 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.03 Total: -5.64 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -68.08 3.57 -64.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026516472.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.575 kcal (2) G-P(sol) polarization free energy of solvation -68.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds