Wall clock time and date at job start Mon Mar 30 2020 03:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34508 * 125.78796 * 2 1 4 4 C 1.41391 * 106.83915 * 180.02562 * 3 2 1 5 5 C 1.34515 * 106.83758 * 359.97438 * 4 3 2 6 6 C 1.50698 * 125.78488 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.47461 * 339.99984 * 6 5 4 8 8 C 1.52999 * 109.47220 * 100.00302 * 6 5 4 9 9 N 1.46905 * 109.46823 * 219.99810 * 6 5 4 10 10 C 1.46905 * 110.99756 * 154.99946 * 9 6 5 11 11 H 1.09004 * 109.46892 * 35.00043 * 10 9 6 12 12 C 1.52996 * 109.47294 * 275.00205 * 10 9 6 13 13 C 1.50699 * 109.47025 * 155.00360 * 10 9 6 14 14 H 1.07998 * 119.99942 * 5.45767 * 13 10 9 15 15 C 1.37872 * 119.99884 * 185.46321 * 13 10 9 16 16 N 1.31516 * 120.00551 * 9.54808 * 15 13 10 17 17 Si 1.86809 * 119.99784 * 189.55023 * 15 13 10 18 18 H 1.48496 * 109.47180 * 84.99283 * 17 15 13 19 19 H 1.48503 * 109.46776 * 204.99301 * 17 15 13 20 20 H 1.48500 * 109.47040 * 324.99339 * 17 15 13 21 21 O 1.34301 * 108.42422 * 0.02562 * 5 4 3 22 22 H 1.08993 * 109.46946 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.46774 * 300.02850 * 1 2 3 24 24 H 1.08993 * 109.46879 * 60.02582 * 1 2 3 25 25 H 1.07995 * 126.58197 * 359.97438 * 3 2 1 26 26 H 1.07994 * 126.57798 * 179.97438 * 4 3 2 27 27 H 1.09001 * 109.46724 * 299.99885 * 8 6 5 28 28 H 1.08998 * 109.47163 * 59.99500 * 8 6 5 29 29 H 1.08999 * 109.47150 * 179.97438 * 8 6 5 30 30 H 1.00896 * 111.00067 * 31.05347 * 9 6 5 31 31 H 1.09003 * 109.47195 * 63.67394 * 12 10 9 32 32 H 1.08992 * 109.47340 * 183.67811 * 12 10 9 33 33 H 1.09005 * 109.47159 * 303.67634 * 12 10 9 34 34 H 0.96994 * 120.00220 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6310 0.6320 -0.0006 5 6 3.5814 -0.7123 -0.0004 6 6 4.7706 -1.6379 -0.0003 7 1 5.6505 -1.0991 -0.3519 8 6 5.0193 -2.1486 1.4204 9 7 4.5052 -2.7761 -0.8903 10 6 5.7586 -3.3594 -1.3871 11 1 6.5208 -3.2982 -0.6101 12 6 6.2264 -2.5870 -2.6221 13 6 5.5301 -4.8030 -1.7542 14 1 4.5342 -5.2190 -1.7148 15 6 6.5923 -5.5926 -2.1402 16 7 7.8234 -5.1485 -2.0101 17 14 6.2830 -7.2934 -2.8484 18 1 6.0197 -7.1825 -4.3056 19 1 7.4771 -8.1473 -2.6246 20 1 5.1063 -7.9022 -2.1777 21 8 2.2925 -1.0895 -0.0002 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5143 0.8897 24 1 -0.3633 0.5134 -0.8902 25 1 1.9666 2.1203 -0.0004 26 1 4.5212 1.2433 -0.0012 27 1 5.2161 -1.3041 2.0808 28 1 4.1394 -2.6874 1.7720 29 1 5.8791 -2.8185 1.4203 30 1 3.9047 -2.5052 -1.6545 31 1 6.4542 -1.5583 -2.3427 32 1 7.1203 -3.0594 -3.0291 33 1 5.4377 -2.5929 -3.3746 34 1 8.5706 -5.7039 -2.2820 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038097781.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:11 Heat of formation + Delta-G solvation = 3.861566 kcal Electronic energy + Delta-G solvation = -15254.105673 eV Core-core repulsion = 12767.326874 eV Total energy + Delta-G solvation = -2486.778800 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.32092 -36.64716 -33.32593 -32.91651 -31.57041 -30.17341 -27.07838 -26.14241 -25.07877 -22.04926 -21.43458 -20.05747 -19.50139 -16.92508 -15.91286 -15.77422 -14.87947 -14.66705 -14.05983 -13.23775 -13.20801 -13.03498 -12.75172 -12.54677 -12.48059 -11.92509 -11.83931 -11.56325 -11.38209 -11.09412 -10.86814 -10.74990 -10.47239 -10.16985 -9.77072 -9.62881 -9.05249 -8.31759 -8.01823 -7.31660 -5.99577 -3.98610 1.97575 2.82271 3.17591 3.34994 3.40893 3.45119 4.45865 4.81365 5.01838 5.21060 5.24290 5.33364 5.42305 5.44811 5.66220 5.77567 5.87598 6.00614 6.11477 6.27726 6.35759 6.47921 6.60951 6.72811 6.76612 6.79121 7.01871 7.26308 7.50635 7.59405 7.90106 8.20409 8.51051 8.59692 9.07710 9.64839 11.09898 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.042576 B = 0.006263 C = 0.005931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.488190 B = 4469.353552 C = 4719.908196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.029 4.029 3 C -0.214 4.214 4 C -0.223 4.223 5 C 0.011 3.989 6 C 0.161 3.839 7 H 0.065 0.935 8 C -0.135 4.135 9 N -0.675 5.675 10 C 0.208 3.792 11 H 0.045 0.955 12 C -0.164 4.164 13 C -0.496 4.496 14 H 0.063 0.937 15 C 0.058 3.942 16 N -0.896 5.896 17 Si 0.894 3.106 18 H -0.281 1.281 19 H -0.289 1.289 20 H -0.274 1.274 21 O -0.157 6.157 22 H 0.075 0.925 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.142 0.858 26 H 0.143 0.857 27 H 0.047 0.953 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.329 0.671 31 H 0.010 0.990 32 H 0.072 0.928 33 H 0.030 0.970 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.415 10.802 3.887 14.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.080 4.080 3 C -0.233 4.233 4 C -0.242 4.242 5 C -0.040 4.040 6 C 0.051 3.949 7 H 0.083 0.917 8 C -0.192 4.192 9 N -0.305 5.305 10 C 0.100 3.900 11 H 0.063 0.937 12 C -0.224 4.224 13 C -0.535 4.535 14 H 0.081 0.919 15 C -0.143 4.143 16 N -0.535 5.535 17 Si 0.722 3.278 18 H -0.208 1.208 19 H -0.215 1.215 20 H -0.199 1.199 21 O -0.053 6.053 22 H 0.094 0.906 23 H 0.099 0.901 24 H 0.099 0.901 25 H 0.160 0.840 26 H 0.161 0.839 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.146 0.854 31 H 0.029 0.971 32 H 0.091 0.909 33 H 0.049 0.951 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.389 9.975 4.385 14.383 hybrid contribution 0.387 0.090 -1.144 1.211 sum -9.001 10.065 3.241 13.887 Atomic orbital electron populations 1.20232 0.85591 1.03886 1.02974 1.22407 0.94009 0.84606 1.06961 1.21443 0.92789 0.99018 1.10057 1.21525 0.98002 0.93923 1.10787 1.22884 0.83242 0.94305 1.03586 1.20166 0.88738 0.89475 0.96551 0.91720 1.21795 1.02996 1.00447 0.94011 1.60962 1.19218 1.27523 1.22842 1.19286 0.85555 0.93294 0.91817 0.93744 1.22407 1.02226 0.96774 1.00983 1.21075 0.94286 0.94334 1.43763 0.91917 1.24933 0.95002 0.98230 0.96107 1.69960 0.97957 1.37908 1.47689 0.86580 0.77601 0.84096 0.79538 1.20754 1.21460 1.19916 1.84059 1.16246 1.34348 1.70627 0.90614 0.90148 0.90098 0.84031 0.83890 0.93381 0.92078 0.91108 0.85361 0.97127 0.90868 0.95109 0.93045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.42 36.01 0.38 -0.31 16 2 C -0.03 -0.42 7.32 -35.62 -0.26 -0.68 16 3 C -0.21 -2.97 10.81 -39.70 -0.43 -3.40 16 4 C -0.22 -3.44 10.80 -39.70 -0.43 -3.87 16 5 C 0.01 0.19 5.81 -35.63 -0.21 -0.01 16 6 C 0.16 3.02 2.88 -68.86 -0.20 2.82 16 7 H 0.07 1.22 7.13 -51.93 -0.37 0.85 16 8 C -0.13 -2.38 9.38 37.16 0.35 -2.03 16 9 N -0.67 -14.79 6.03 -102.17 -0.62 -15.41 16 10 C 0.21 5.22 2.25 -68.86 -0.15 5.06 16 11 H 0.04 1.21 7.06 -51.93 -0.37 0.85 16 12 C -0.16 -3.91 9.03 37.16 0.34 -3.57 16 13 C -0.50 -13.81 8.76 -34.44 -0.30 -14.12 16 14 H 0.06 1.78 7.83 -52.49 -0.41 1.36 16 15 C 0.06 1.63 5.17 -17.82 -0.09 1.53 16 16 N -0.90 -25.79 12.16 55.43 0.67 -25.12 16 17 Si 0.89 21.62 29.55 -169.99 -5.02 16.59 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 21 O -0.16 -2.77 10.64 5.71 0.06 -2.71 16 22 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 26 H 0.14 1.94 8.06 -52.49 -0.42 1.52 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.07 1.34 7.43 -51.93 -0.39 0.96 16 30 H 0.33 7.11 8.05 -39.29 -0.32 6.79 16 31 H 0.01 0.21 7.47 -51.93 -0.39 -0.18 16 32 H 0.07 1.91 6.83 -51.93 -0.35 1.55 16 33 H 0.03 0.69 8.07 -51.93 -0.42 0.27 16 34 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 287.34 15.07 4.33 4.33 Total: -1.00 -29.59 287.34 -6.69 -36.29 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -5.11 Total: 4.59 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: -1.01 Total: -18.57 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.06 Total: -40.53 kcal Atomic # 8 Polarization: -2.77 SS G_CDS: 0.06 Total: -2.71 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.59 -6.69 -36.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038097781.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.149 kcal (2) G-P(sol) polarization free energy of solvation -29.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds