Wall clock time and date at job start Mon Mar 30 2020 03:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34508 * 125.78796 * 2 1 4 4 C 1.41391 * 106.83915 * 180.02562 * 3 2 1 5 5 C 1.34515 * 106.83758 * 359.97438 * 4 3 2 6 6 C 1.50698 * 125.78488 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.47461 * 339.99984 * 6 5 4 8 8 C 1.52999 * 109.47220 * 100.00302 * 6 5 4 9 9 N 1.46905 * 109.46823 * 219.99810 * 6 5 4 10 10 C 1.46905 * 110.99756 * 154.99946 * 9 6 5 11 11 H 1.09004 * 109.46892 * 35.00043 * 10 9 6 12 12 C 1.52996 * 109.47294 * 275.00205 * 10 9 6 13 13 C 1.50699 * 109.47025 * 155.00360 * 10 9 6 14 14 H 1.07998 * 119.99942 * 5.45767 * 13 10 9 15 15 C 1.37872 * 119.99884 * 185.46321 * 13 10 9 16 16 N 1.31516 * 120.00551 * 9.54808 * 15 13 10 17 17 Si 1.86809 * 119.99784 * 189.55023 * 15 13 10 18 18 H 1.48496 * 109.47180 * 84.99283 * 17 15 13 19 19 H 1.48503 * 109.46776 * 204.99301 * 17 15 13 20 20 H 1.48500 * 109.47040 * 324.99339 * 17 15 13 21 21 O 1.34301 * 108.42422 * 0.02562 * 5 4 3 22 22 H 1.08993 * 109.46946 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.46774 * 300.02850 * 1 2 3 24 24 H 1.08993 * 109.46879 * 60.02582 * 1 2 3 25 25 H 1.07995 * 126.58197 * 359.97438 * 3 2 1 26 26 H 1.07994 * 126.57798 * 179.97438 * 4 3 2 27 27 H 1.09001 * 109.46724 * 299.99885 * 8 6 5 28 28 H 1.08998 * 109.47163 * 59.99500 * 8 6 5 29 29 H 1.08999 * 109.47150 * 179.97438 * 8 6 5 30 30 H 1.00896 * 111.00067 * 31.05347 * 9 6 5 31 31 H 1.09003 * 109.47195 * 63.67394 * 12 10 9 32 32 H 1.08992 * 109.47340 * 183.67811 * 12 10 9 33 33 H 1.09005 * 109.47159 * 303.67634 * 12 10 9 34 34 H 0.96994 * 120.00220 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6310 0.6320 -0.0006 5 6 3.5814 -0.7123 -0.0004 6 6 4.7706 -1.6379 -0.0003 7 1 5.6505 -1.0991 -0.3519 8 6 5.0193 -2.1486 1.4204 9 7 4.5052 -2.7761 -0.8903 10 6 5.7586 -3.3594 -1.3871 11 1 6.5208 -3.2982 -0.6101 12 6 6.2264 -2.5870 -2.6221 13 6 5.5301 -4.8030 -1.7542 14 1 4.5342 -5.2190 -1.7148 15 6 6.5923 -5.5926 -2.1402 16 7 7.8234 -5.1485 -2.0101 17 14 6.2830 -7.2934 -2.8484 18 1 6.0197 -7.1825 -4.3056 19 1 7.4771 -8.1473 -2.6246 20 1 5.1063 -7.9022 -2.1777 21 8 2.2925 -1.0895 -0.0002 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5143 0.8897 24 1 -0.3633 0.5134 -0.8902 25 1 1.9666 2.1203 -0.0004 26 1 4.5212 1.2433 -0.0012 27 1 5.2161 -1.3041 2.0808 28 1 4.1394 -2.6874 1.7720 29 1 5.8791 -2.8185 1.4203 30 1 3.9047 -2.5052 -1.6545 31 1 6.4542 -1.5583 -2.3427 32 1 7.1203 -3.0594 -3.0291 33 1 5.4377 -2.5929 -3.3746 34 1 8.5706 -5.7039 -2.2820 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038097781.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:10 Heat of formation + Delta-G solvation = -14.597545 kcal Electronic energy + Delta-G solvation = -15254.906120 eV Core-core repulsion = 12767.326874 eV Total energy + Delta-G solvation = -2487.579247 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.50509 -38.36608 -35.17483 -34.04664 -33.09862 -31.59734 -28.83221 -27.34578 -27.10517 -23.53279 -22.62923 -21.77476 -20.83465 -18.70946 -17.42086 -17.11958 -16.77559 -16.10702 -15.63112 -14.77510 -14.65445 -14.21085 -13.91450 -13.80599 -13.66527 -13.61428 -13.37877 -13.01348 -12.89340 -12.77811 -12.66974 -12.43754 -12.27988 -12.13576 -11.67347 -11.10806 -10.76935 -10.45936 -9.17304 -9.08325 -8.12693 -6.19296 0.80144 1.43155 1.43632 1.53920 1.69729 2.04221 2.44463 3.17517 3.44631 3.72850 4.06095 4.16893 4.29395 4.39839 4.59488 4.67664 4.76005 4.76747 4.82820 4.85411 4.89251 4.95172 5.06758 5.09397 5.25256 5.35320 5.38132 5.61607 5.69245 5.75606 6.18413 6.31991 6.61538 6.75077 6.92199 7.48473 8.95611 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.042576 B = 0.006263 C = 0.005931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.488190 B = 4469.353552 C = 4719.908196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.032 4.032 3 C -0.220 4.220 4 C -0.214 4.214 5 C -0.023 4.023 6 C 0.163 3.837 7 H 0.064 0.936 8 C -0.128 4.128 9 N -0.680 5.680 10 C 0.215 3.785 11 H 0.017 0.983 12 C -0.152 4.152 13 C -0.517 4.517 14 H 0.051 0.949 15 C 0.014 3.986 16 N -0.922 5.922 17 Si 0.956 3.044 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.272 1.272 21 O -0.184 6.184 22 H 0.073 0.927 23 H 0.104 0.896 24 H 0.102 0.898 25 H 0.173 0.827 26 H 0.159 0.841 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.330 0.670 31 H 0.031 0.969 32 H 0.047 0.953 33 H 0.036 0.964 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.815 11.944 3.811 16.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.082 4.082 3 C -0.239 4.239 4 C -0.233 4.233 5 C -0.073 4.073 6 C 0.053 3.947 7 H 0.082 0.918 8 C -0.186 4.186 9 N -0.311 5.311 10 C 0.106 3.894 11 H 0.035 0.965 12 C -0.211 4.211 13 C -0.555 4.555 14 H 0.070 0.930 15 C -0.185 4.185 16 N -0.562 5.562 17 Si 0.782 3.218 18 H -0.200 1.200 19 H -0.209 1.209 20 H -0.197 1.197 21 O -0.081 6.081 22 H 0.092 0.908 23 H 0.123 0.877 24 H 0.120 0.880 25 H 0.190 0.810 26 H 0.177 0.823 27 H 0.094 0.906 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.147 0.853 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.797 11.129 4.315 16.095 hybrid contribution 0.753 -0.180 -1.074 1.323 sum -10.044 10.950 3.241 15.208 Atomic orbital electron populations 1.20465 0.82532 1.04503 1.05144 1.23347 0.95774 0.83952 1.05150 1.21816 0.91829 1.00444 1.09788 1.21851 0.99553 0.93227 1.08710 1.22568 0.83011 0.94649 1.07105 1.20086 0.89909 0.88756 0.95955 0.91847 1.21732 1.01584 1.00996 0.94265 1.60820 1.17731 1.29566 1.22941 1.19025 0.86143 0.92781 0.91411 0.96548 1.22219 1.01066 0.97474 1.00365 1.21358 0.93875 0.96023 1.44280 0.93024 1.25666 0.94738 1.01881 0.96219 1.70064 0.98612 1.39273 1.48203 0.85598 0.77499 0.79744 0.78945 1.19971 1.20925 1.19698 1.84029 1.16575 1.36139 1.71367 0.90812 0.87730 0.87971 0.80962 0.82311 0.90579 0.92924 0.93188 0.85294 0.95047 0.93428 0.94490 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.16 10.42 71.24 0.74 -0.42 16 2 C -0.03 -0.85 7.32 24.83 0.18 -0.67 16 3 C -0.22 -5.46 10.81 22.19 0.24 -5.23 16 4 C -0.21 -6.17 10.80 22.19 0.24 -5.93 16 5 C -0.02 -0.78 5.81 24.83 0.14 -0.64 16 6 C 0.16 6.14 2.88 44.17 0.13 6.27 16 7 H 0.06 2.39 7.13 -2.39 -0.02 2.37 16 8 C -0.13 -4.57 9.38 71.98 0.68 -3.90 16 9 N -0.68 -30.33 6.03 -477.14 -2.88 -33.21 16 10 C 0.21 11.02 2.25 44.17 0.10 11.11 16 11 H 0.02 0.94 7.06 -2.38 -0.02 0.92 16 12 C -0.15 -7.26 9.03 71.98 0.65 -6.61 16 13 C -0.52 -29.31 8.76 25.60 0.22 -29.09 16 14 H 0.05 2.98 7.83 -2.91 -0.02 2.95 16 15 C 0.01 0.76 5.17 84.65 0.44 1.20 16 16 N -0.92 -53.81 12.16 21.45 0.26 -53.54 16 17 Si 0.96 44.56 29.55 68.60 2.03 46.59 16 18 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 19 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 20 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 21 O -0.18 -6.34 10.64 -2.49 -0.03 -6.37 16 22 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 23 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.17 3.10 8.06 -2.91 -0.02 3.08 16 26 H 0.16 3.93 8.06 -2.91 -0.02 3.91 16 27 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.05 1.96 7.43 -2.39 -0.02 1.94 16 30 H 0.33 14.42 8.05 -89.70 -0.72 13.70 16 31 H 0.03 1.32 7.47 -2.39 -0.02 1.30 16 32 H 0.05 2.50 6.83 -2.39 -0.02 2.49 16 33 H 0.04 1.67 8.07 -2.38 -0.02 1.65 16 34 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -63.69 287.34 3.50 -60.19 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.36 Total: 20.23 kcal Atomic # 6 Polarization: -37.65 SS G_CDS: 3.76 Total: -33.89 kcal Atomic # 7 Polarization: -84.14 SS G_CDS: -2.62 Total: -86.75 kcal Atomic # 8 Polarization: -6.34 SS G_CDS: -0.03 Total: -6.37 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -63.69 3.50 -60.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038097781.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.593 kcal (2) G-P(sol) polarization free energy of solvation -63.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds