Wall clock time and date at job start Mon Mar 30 2020 03:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.34516 * 125.78751 * 2 1 4 4 C 1.41382 * 106.83884 * 180.02562 * 3 2 1 5 5 C 1.34511 * 106.84002 * 359.97438 * 4 3 2 6 6 C 1.50702 * 125.78662 * 179.73278 * 5 4 3 7 7 H 1.09004 * 109.46741 * 20.00690 * 6 5 4 8 8 C 1.52993 * 109.47524 * 260.00691 * 6 5 4 9 9 N 1.46902 * 109.46913 * 140.00062 * 6 5 4 10 10 C 1.46894 * 111.00330 * 206.40080 * 9 6 5 11 11 H 1.09004 * 109.47442 * 325.13663 * 10 9 6 12 12 C 1.52990 * 109.47287 * 205.13182 * 10 9 6 13 13 C 1.50699 * 109.46960 * 85.12863 * 10 9 6 14 14 H 1.08003 * 120.00133 * 0.02562 * 13 10 9 15 15 C 1.37876 * 120.00300 * 179.97438 * 13 10 9 16 16 N 1.31511 * 119.99790 * 0.02562 * 15 13 10 17 17 Si 1.86798 * 120.00120 * 180.02562 * 15 13 10 18 18 H 1.48496 * 109.47338 * 90.00308 * 17 15 13 19 19 H 1.48502 * 109.46992 * 210.00221 * 17 15 13 20 20 H 1.48495 * 109.47468 * 330.00117 * 17 15 13 21 21 O 1.34300 * 125.78964 * 180.02562 * 2 1 3 22 22 H 1.08999 * 109.46933 * 89.99819 * 1 2 3 23 23 H 1.08998 * 109.46907 * 209.99367 * 1 2 3 24 24 H 1.08999 * 109.47297 * 329.99657 * 1 2 3 25 25 H 1.08003 * 126.57828 * 0.02562 * 3 2 1 26 26 H 1.08000 * 126.57845 * 179.97438 * 4 3 2 27 27 H 1.09003 * 109.46899 * 304.56555 * 8 6 5 28 28 H 1.08998 * 109.47371 * 64.55976 * 8 6 5 29 29 H 1.09003 * 109.47609 * 184.56575 * 8 6 5 30 30 H 1.00905 * 110.99553 * 82.44950 * 9 6 5 31 31 H 1.09002 * 109.47177 * 294.14872 * 12 10 9 32 32 H 1.08998 * 109.47851 * 54.15221 * 12 10 9 33 33 H 1.09006 * 109.47428 * 174.15509 * 12 10 9 34 34 H 0.97006 * 120.00263 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2937 1.0912 0.0000 4 6 3.6309 0.6321 -0.0006 5 6 3.5814 -0.7121 -0.0004 6 6 4.7706 -1.6378 -0.0065 7 1 5.6523 -1.0988 0.3406 8 6 5.0121 -2.1486 -1.4283 9 7 4.5099 -2.7758 0.8851 10 6 5.7648 -3.3382 1.4016 11 1 6.5373 -3.2671 0.6359 12 6 5.5502 -4.8063 1.7748 13 6 6.1957 -2.5672 2.6227 14 1 5.5969 -1.7422 2.9796 15 6 7.3537 -2.9157 3.2849 16 7 8.0825 -3.9205 2.8507 17 14 7.8874 -1.9604 4.7989 18 1 7.3007 -2.5859 6.0112 19 1 9.3688 -1.9798 4.8996 20 1 7.4170 -0.5562 4.6896 21 8 2.2925 -1.0894 -0.0005 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5137 24 1 -0.3634 0.8899 0.5139 25 1 1.9665 2.1205 0.0004 26 1 4.5213 1.2434 -0.0012 27 1 4.1028 -2.6165 -1.8055 28 1 5.2851 -1.3132 -2.0731 29 1 5.8203 -2.8799 -1.4194 30 1 3.9620 -3.4828 0.4181 31 1 4.8547 -4.8705 2.6117 32 1 5.1397 -5.3425 0.9193 33 1 6.5034 -5.2519 2.0597 34 1 8.8971 -4.1660 3.3168 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038097782.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:13 Heat of formation + Delta-G solvation = 4.521672 kcal Electronic energy + Delta-G solvation = -15332.250182 eV Core-core repulsion = 12845.500007 eV Total energy + Delta-G solvation = -2486.750175 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.12172 -36.64964 -33.33042 -32.75389 -31.51654 -30.14616 -26.91547 -26.07997 -25.12744 -21.88752 -21.32136 -20.15500 -19.50609 -16.26344 -16.08650 -15.68990 -14.92005 -14.39842 -13.99457 -13.57785 -13.04246 -12.99752 -12.84429 -12.52685 -12.36988 -12.24278 -11.77202 -11.48974 -11.22284 -10.93787 -10.80302 -10.62754 -10.29968 -10.05707 -9.86993 -9.44303 -9.15310 -8.39581 -7.82659 -7.28628 -5.97574 -4.00635 2.16811 3.02704 3.33723 3.36206 3.39890 3.44748 4.45608 4.93249 5.11254 5.31483 5.35494 5.40542 5.50895 5.54468 5.65616 5.73237 5.79181 6.04443 6.19544 6.32193 6.35355 6.47945 6.63060 6.75198 6.93840 6.96687 7.02911 7.42198 7.66772 7.72998 7.92863 8.23535 8.34250 8.71800 9.07314 9.64684 11.09209 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.031432 B = 0.007311 C = 0.006670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.589799 B = 3829.048308 C = 4197.185635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.038 4.038 3 C -0.210 4.210 4 C -0.229 4.229 5 C 0.038 3.962 6 C 0.164 3.836 7 H 0.112 0.888 8 C -0.177 4.177 9 N -0.678 5.678 10 C 0.211 3.789 11 H 0.006 0.994 12 C -0.140 4.140 13 C -0.495 4.495 14 H 0.062 0.938 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.895 3.105 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.274 1.274 21 O -0.164 6.164 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.082 0.918 25 H 0.140 0.860 26 H 0.143 0.857 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.322 0.678 31 H 0.036 0.964 32 H 0.006 0.994 33 H 0.086 0.914 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.849 5.909 -7.296 13.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.088 4.088 3 C -0.229 4.229 4 C -0.249 4.249 5 C -0.013 4.013 6 C 0.053 3.947 7 H 0.130 0.870 8 C -0.236 4.236 9 N -0.308 5.308 10 C 0.104 3.896 11 H 0.023 0.977 12 C -0.198 4.198 13 C -0.534 4.534 14 H 0.080 0.920 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.724 3.276 18 H -0.208 1.208 19 H -0.214 1.214 20 H -0.199 1.199 21 O -0.060 6.060 22 H 0.092 0.908 23 H 0.092 0.908 24 H 0.101 0.899 25 H 0.157 0.843 26 H 0.161 0.839 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.139 0.861 31 H 0.056 0.944 32 H 0.025 0.975 33 H 0.104 0.896 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.878 5.893 -6.676 13.299 hybrid contribution 0.795 0.290 0.142 0.858 sum -9.083 6.182 -6.534 12.783 Atomic orbital electron populations 1.20188 0.85856 1.03600 1.02756 1.22293 0.93821 0.84721 1.08000 1.21428 0.92926 0.98813 1.09754 1.21463 0.97866 0.94020 1.11503 1.22821 0.82648 0.94304 1.01565 1.20095 0.90771 0.92330 0.91482 0.87046 1.22517 1.01952 1.01676 0.97428 1.60700 1.22654 1.10316 1.37089 1.19213 0.84185 0.91560 0.94637 0.97687 1.21923 1.02557 0.97621 0.97694 1.21197 1.06401 1.15261 1.10548 0.92009 1.24946 0.96493 0.95367 0.97645 1.69893 1.15402 1.27942 1.40502 0.86536 0.77389 0.80425 0.83294 1.20752 1.21395 1.19942 1.83975 1.16551 1.34514 1.70951 0.90804 0.90813 0.89947 0.84259 0.83947 0.92784 0.92449 0.91449 0.86133 0.94439 0.97521 0.89559 0.93089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 10.42 36.01 0.38 -0.34 16 2 C -0.04 -0.59 7.32 -35.62 -0.26 -0.85 16 3 C -0.21 -3.23 10.81 -39.70 -0.43 -3.66 16 4 C -0.23 -3.94 10.80 -39.70 -0.43 -4.37 16 5 C 0.04 0.72 6.16 -35.62 -0.22 0.50 16 6 C 0.16 3.18 2.84 -68.87 -0.20 2.99 16 7 H 0.11 2.33 7.62 -51.93 -0.40 1.94 16 8 C -0.18 -2.88 9.14 37.15 0.34 -2.54 16 9 N -0.68 -14.79 6.03 -102.18 -0.62 -15.41 16 10 C 0.21 5.28 2.41 -68.87 -0.17 5.11 16 11 H 0.01 0.15 7.20 -51.93 -0.37 -0.23 16 12 C -0.14 -3.38 8.93 37.15 0.33 -3.05 16 13 C -0.50 -13.80 8.51 -34.44 -0.29 -14.10 16 14 H 0.06 1.78 7.81 -52.48 -0.41 1.37 16 15 C 0.06 1.56 5.30 -17.82 -0.09 1.47 16 16 N -0.90 -25.61 11.38 55.43 0.63 -24.98 16 17 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 O -0.16 -3.02 10.65 5.72 0.06 -2.96 16 22 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.14 1.74 8.06 -52.48 -0.42 1.32 16 26 H 0.14 2.22 8.06 -52.49 -0.42 1.79 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.07 1.13 7.49 -51.93 -0.39 0.74 16 30 H 0.32 6.51 7.99 -39.29 -0.31 6.19 16 31 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.01 0.13 8.00 -51.93 -0.42 -0.29 16 33 H 0.09 2.27 6.25 -51.93 -0.32 1.95 16 34 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 287.20 15.07 4.33 4.33 Total: -1.00 -29.81 287.20 -6.80 -36.61 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -5.14 Total: 4.53 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: -1.04 Total: -18.84 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.02 Total: -40.38 kcal Atomic # 8 Polarization: -3.02 SS G_CDS: 0.06 Total: -2.96 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.81 -6.80 -36.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038097782.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.132 kcal (2) G-P(sol) polarization free energy of solvation -29.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds