Wall clock time and date at job start Mon Mar 30 2020 03:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.34516 * 125.78751 * 2 1 4 4 C 1.41382 * 106.83884 * 180.02562 * 3 2 1 5 5 C 1.34511 * 106.84002 * 359.97438 * 4 3 2 6 6 C 1.50702 * 125.78662 * 179.73278 * 5 4 3 7 7 H 1.09004 * 109.46741 * 20.00690 * 6 5 4 8 8 C 1.52993 * 109.47524 * 260.00691 * 6 5 4 9 9 N 1.46902 * 109.46913 * 140.00062 * 6 5 4 10 10 C 1.46894 * 111.00330 * 206.40080 * 9 6 5 11 11 H 1.09004 * 109.47442 * 325.13663 * 10 9 6 12 12 C 1.52990 * 109.47287 * 205.13182 * 10 9 6 13 13 C 1.50699 * 109.46960 * 85.12863 * 10 9 6 14 14 H 1.08003 * 120.00133 * 0.02562 * 13 10 9 15 15 C 1.37876 * 120.00300 * 179.97438 * 13 10 9 16 16 N 1.31511 * 119.99790 * 0.02562 * 15 13 10 17 17 Si 1.86798 * 120.00120 * 180.02562 * 15 13 10 18 18 H 1.48496 * 109.47338 * 90.00308 * 17 15 13 19 19 H 1.48502 * 109.46992 * 210.00221 * 17 15 13 20 20 H 1.48495 * 109.47468 * 330.00117 * 17 15 13 21 21 O 1.34300 * 125.78964 * 180.02562 * 2 1 3 22 22 H 1.08999 * 109.46933 * 89.99819 * 1 2 3 23 23 H 1.08998 * 109.46907 * 209.99367 * 1 2 3 24 24 H 1.08999 * 109.47297 * 329.99657 * 1 2 3 25 25 H 1.08003 * 126.57828 * 0.02562 * 3 2 1 26 26 H 1.08000 * 126.57845 * 179.97438 * 4 3 2 27 27 H 1.09003 * 109.46899 * 304.56555 * 8 6 5 28 28 H 1.08998 * 109.47371 * 64.55976 * 8 6 5 29 29 H 1.09003 * 109.47609 * 184.56575 * 8 6 5 30 30 H 1.00905 * 110.99553 * 82.44950 * 9 6 5 31 31 H 1.09002 * 109.47177 * 294.14872 * 12 10 9 32 32 H 1.08998 * 109.47851 * 54.15221 * 12 10 9 33 33 H 1.09006 * 109.47428 * 174.15509 * 12 10 9 34 34 H 0.97006 * 120.00263 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2937 1.0912 0.0000 4 6 3.6309 0.6321 -0.0006 5 6 3.5814 -0.7121 -0.0004 6 6 4.7706 -1.6378 -0.0065 7 1 5.6523 -1.0988 0.3406 8 6 5.0121 -2.1486 -1.4283 9 7 4.5099 -2.7758 0.8851 10 6 5.7648 -3.3382 1.4016 11 1 6.5373 -3.2671 0.6359 12 6 5.5502 -4.8063 1.7748 13 6 6.1957 -2.5672 2.6227 14 1 5.5969 -1.7422 2.9796 15 6 7.3537 -2.9157 3.2849 16 7 8.0825 -3.9205 2.8507 17 14 7.8874 -1.9604 4.7989 18 1 7.3007 -2.5859 6.0112 19 1 9.3688 -1.9798 4.8996 20 1 7.4170 -0.5562 4.6896 21 8 2.2925 -1.0894 -0.0005 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5137 24 1 -0.3634 0.8899 0.5139 25 1 1.9665 2.1205 0.0004 26 1 4.5213 1.2434 -0.0012 27 1 4.1028 -2.6165 -1.8055 28 1 5.2851 -1.3132 -2.0731 29 1 5.8203 -2.8799 -1.4194 30 1 3.9620 -3.4828 0.4181 31 1 4.8547 -4.8705 2.6117 32 1 5.1397 -5.3425 0.9193 33 1 6.5034 -5.2519 2.0597 34 1 8.8971 -4.1660 3.3168 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038097782.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:13 Heat of formation + Delta-G solvation = -14.021462 kcal Electronic energy + Delta-G solvation = -15333.054273 eV Core-core repulsion = 12845.500007 eV Total energy + Delta-G solvation = -2487.554266 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.40970 -38.37186 -35.20712 -33.98941 -33.07900 -31.62003 -28.62773 -27.33227 -27.16639 -23.32335 -22.65807 -22.04627 -20.82008 -18.25775 -17.59543 -16.98183 -16.84556 -15.80671 -15.73876 -15.21834 -14.57865 -14.31016 -13.87312 -13.76078 -13.66171 -13.62901 -13.35160 -13.00134 -12.86050 -12.63215 -12.59263 -12.32274 -12.24340 -12.00140 -11.76477 -11.18497 -10.71363 -10.52333 -9.16435 -9.00542 -8.10210 -6.20905 0.89251 1.40373 1.41451 1.51907 1.75880 2.13289 2.42839 3.16725 3.47129 3.86712 4.07568 4.18191 4.27459 4.34217 4.61424 4.72205 4.76194 4.77314 4.86045 4.92863 4.95100 4.99097 5.06850 5.09195 5.23014 5.36412 5.47014 5.69998 5.74828 5.82238 6.27452 6.33072 6.47120 6.89507 6.91371 7.48212 8.94663 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.031432 B = 0.007311 C = 0.006670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.589799 B = 3829.048308 C = 4197.185635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.039 4.039 3 C -0.220 4.220 4 C -0.233 4.233 5 C 0.006 3.994 6 C 0.166 3.834 7 H 0.086 0.914 8 C -0.165 4.165 9 N -0.683 5.683 10 C 0.217 3.783 11 H -0.016 1.016 12 C -0.129 4.129 13 C -0.514 4.514 14 H 0.045 0.955 15 C 0.013 3.987 16 N -0.919 5.919 17 Si 0.955 3.045 18 H -0.277 1.277 19 H -0.280 1.280 20 H -0.274 1.274 21 O -0.184 6.184 22 H 0.095 0.905 23 H 0.075 0.925 24 H 0.106 0.894 25 H 0.170 0.830 26 H 0.151 0.849 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.331 0.669 31 H 0.029 0.971 32 H 0.035 0.965 33 H 0.062 0.938 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.213 6.960 -7.528 15.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.089 4.089 3 C -0.239 4.239 4 C -0.253 4.253 5 C -0.045 4.045 6 C 0.055 3.945 7 H 0.104 0.896 8 C -0.224 4.224 9 N -0.314 5.314 10 C 0.110 3.890 11 H 0.001 0.999 12 C -0.188 4.188 13 C -0.552 4.552 14 H 0.063 0.937 15 C -0.186 4.186 16 N -0.559 5.559 17 Si 0.781 3.219 18 H -0.203 1.203 19 H -0.205 1.205 20 H -0.199 1.199 21 O -0.080 6.080 22 H 0.114 0.886 23 H 0.094 0.906 24 H 0.125 0.875 25 H 0.187 0.813 26 H 0.169 0.831 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.148 0.852 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.253 6.948 -6.921 14.926 hybrid contribution 1.145 0.013 0.177 1.158 sum -10.108 6.961 -6.744 14.004 Atomic orbital electron populations 1.20431 0.82398 1.04907 1.04566 1.23287 0.95754 0.83968 1.05886 1.21793 0.91882 1.00392 1.09812 1.21786 0.99376 0.93740 1.10364 1.22622 0.82813 0.94626 1.04449 1.19970 0.90679 0.91307 0.92524 0.89568 1.22383 1.02104 1.02061 0.95846 1.60563 1.21203 1.10951 1.38659 1.18982 0.84948 0.91890 0.93229 0.99877 1.21751 1.01185 0.97328 0.98511 1.21389 1.06738 1.15310 1.11794 0.93688 1.25639 0.96477 0.96213 1.00222 1.69997 1.15621 1.28791 1.41495 0.85609 0.77264 0.79066 0.80004 1.20281 1.20540 1.19873 1.83947 1.16569 1.36030 1.71501 0.88620 0.90598 0.87514 0.81296 0.83136 0.91685 0.90610 0.92343 0.85170 0.95190 0.94626 0.91871 0.92910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.20 10.42 71.24 0.74 -0.46 16 2 C -0.04 -1.13 7.32 24.84 0.18 -0.95 16 3 C -0.22 -6.28 10.81 22.19 0.24 -6.04 16 4 C -0.23 -7.83 10.80 22.19 0.24 -7.59 16 5 C 0.01 0.22 6.16 24.83 0.15 0.37 16 6 C 0.17 6.51 2.84 44.17 0.13 6.64 16 7 H 0.09 3.76 7.62 -2.38 -0.02 3.74 16 8 C -0.17 -5.32 9.14 71.98 0.66 -4.67 16 9 N -0.68 -30.18 6.03 -477.18 -2.88 -33.05 16 10 C 0.22 11.09 2.41 44.17 0.11 11.19 16 11 H -0.02 -0.89 7.20 -2.39 -0.02 -0.91 16 12 C -0.13 -6.31 8.93 71.98 0.64 -5.66 16 13 C -0.51 -29.20 8.51 25.60 0.22 -28.98 16 14 H 0.04 2.65 7.81 -2.91 -0.02 2.63 16 15 C 0.01 0.73 5.30 84.65 0.45 1.18 16 16 N -0.92 -52.97 11.38 21.45 0.24 -52.73 16 17 Si 0.95 44.80 29.54 68.60 2.03 46.83 16 18 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 19 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 20 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 21 O -0.18 -6.60 10.65 -2.44 -0.03 -6.63 16 22 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.17 3.66 8.06 -2.91 -0.02 3.64 16 26 H 0.15 4.62 8.06 -2.91 -0.02 4.59 16 27 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.06 1.96 7.49 -2.39 -0.02 1.95 16 30 H 0.33 13.33 7.99 -89.69 -0.72 12.61 16 31 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.03 1.47 8.00 -2.39 -0.02 1.46 16 33 H 0.06 3.37 6.25 -2.38 -0.01 3.35 16 34 H 0.26 14.34 8.31 -92.70 -0.77 13.57 16 Total: -1.00 -63.94 287.20 3.48 -60.46 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.36 Total: 20.08 kcal Atomic # 6 Polarization: -38.71 SS G_CDS: 3.76 Total: -34.96 kcal Atomic # 7 Polarization: -83.15 SS G_CDS: -2.63 Total: -85.78 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -0.03 Total: -6.63 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -63.94 3.48 -60.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038097782.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.434 kcal (2) G-P(sol) polarization free energy of solvation -63.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds