Wall clock time and date at job start Mon Mar 30 2020 03:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99973 * 2 1 4 4 H 1.48498 * 109.46890 * 240.00104 * 3 2 1 5 5 H 1.48498 * 109.47143 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47011 * 120.00186 * 3 2 1 7 7 C 1.37872 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00087 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00166 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47042 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47001 * 180.02562 * 10 9 7 12 12 N 1.46905 * 109.46895 * 180.02562 * 11 10 9 13 13 C 1.46901 * 110.99463 * 180.02562 * 12 11 10 14 14 C 1.53008 * 109.46729 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.46697 * 180.02562 * 14 13 12 16 16 C 1.34511 * 125.79278 * 90.00315 * 15 14 13 17 17 C 1.41386 * 106.84141 * 180.02562 * 16 15 14 18 18 C 1.34507 * 106.84010 * 0.02562 * 17 16 15 19 19 O 1.34304 * 108.42311 * 359.97438 * 18 17 16 20 20 H 0.97002 * 120.00007 * 359.97438 * 1 2 3 21 21 H 1.08996 * 109.46676 * 60.00706 * 9 7 2 22 22 H 1.08998 * 109.46932 * 300.00396 * 9 7 2 23 23 H 1.09001 * 109.47378 * 60.00524 * 10 9 7 24 24 H 1.08999 * 109.47236 * 300.00426 * 10 9 7 25 25 H 1.08996 * 109.46883 * 60.00434 * 11 10 9 26 26 H 1.08998 * 109.46766 * 300.00099 * 11 10 9 27 27 H 1.00893 * 110.99867 * 303.94934 * 12 11 10 28 28 H 1.09001 * 109.46999 * 60.00464 * 13 12 11 29 29 H 1.08995 * 109.47557 * 300.00047 * 13 12 11 30 30 H 1.08994 * 109.46939 * 60.00146 * 14 13 12 31 31 H 1.09003 * 109.47242 * 299.99732 * 14 13 12 32 32 H 1.07999 * 126.58024 * 359.97438 * 16 15 14 33 33 H 1.08004 * 126.57483 * 179.97438 * 17 16 15 34 34 H 1.08004 * 125.79019 * 180.26381 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 7 2.4349 -6.1036 -0.0006 13 6 1.7345 -7.3949 -0.0018 14 6 2.7595 -8.5310 -0.0017 15 6 2.0411 -9.8556 -0.0036 16 6 1.6671 -10.5462 -1.0957 17 6 1.0286 -11.7218 -0.6381 18 6 1.0500 -11.6789 0.7061 19 8 1.6647 -10.5465 1.0849 20 1 -0.4850 0.8401 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6246 -2.5570 0.8896 23 1 2.8719 -3.6044 0.8895 24 1 2.8719 -3.6042 -0.8905 25 1 0.8540 -5.0446 -0.8914 26 1 0.8533 -5.0450 0.8886 27 1 3.0702 -6.0365 -0.7815 28 1 1.1107 -7.4690 -0.8925 29 1 1.1087 -7.4697 0.8874 30 1 3.3838 -8.4570 0.8887 31 1 3.3850 -8.4560 -0.8913 32 1 1.8238 -10.2577 -2.1245 33 1 0.6042 -12.5037 -1.2506 34 1 0.6460 -12.4302 1.3685 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042225238.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:30 Heat of formation + Delta-G solvation = -8.418675 kcal Electronic energy + Delta-G solvation = -14107.581748 eV Core-core repulsion = 11620.270437 eV Total energy + Delta-G solvation = -2487.311311 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.69851 -36.84368 -34.12406 -33.14882 -32.40130 -30.62889 -27.81244 -25.69371 -22.96565 -22.00179 -21.90330 -20.57717 -19.96932 -17.47456 -16.33662 -16.18701 -15.76724 -14.98421 -14.51733 -14.26171 -13.89691 -13.59159 -12.98780 -12.81184 -12.62132 -12.25130 -12.02759 -11.53400 -11.47518 -11.11416 -10.77909 -10.55864 -10.51778 -10.08294 -9.67344 -9.33244 -9.05714 -8.59610 -8.32066 -8.21651 -5.97230 -3.99455 1.57386 2.45079 2.84406 3.35541 3.39534 3.42338 4.27621 4.49030 4.74771 4.82326 4.85829 5.03846 5.15427 5.38432 5.43442 5.58990 5.66082 5.78226 5.82834 5.89040 5.97997 6.01759 6.32891 6.35151 6.72569 6.76294 6.99380 7.15351 7.29894 7.60091 7.70783 7.85981 8.03193 8.46289 9.07630 9.64408 11.14253 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.092142 B = 0.003339 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 303.805098 B = 8384.844962 C = 8477.641928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.059 3.941 12 N -0.691 5.691 13 C 0.062 3.938 14 C -0.040 4.040 15 C -0.001 4.001 16 C -0.216 4.216 17 C -0.214 4.214 18 C -0.048 4.048 19 O -0.175 6.175 20 H 0.261 0.739 21 H 0.014 0.986 22 H 0.016 0.984 23 H 0.056 0.944 24 H 0.045 0.955 25 H 0.025 0.975 26 H 0.067 0.933 27 H 0.338 0.662 28 H 0.031 0.969 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.946 -21.596 -1.140 21.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.069 4.069 12 N -0.322 5.322 13 C -0.068 4.068 14 C -0.078 4.078 15 C -0.052 4.052 16 C -0.235 4.235 17 C -0.233 4.233 18 C -0.115 4.115 19 O -0.071 6.071 20 H 0.070 0.930 21 H 0.032 0.968 22 H 0.034 0.966 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.044 0.956 26 H 0.086 0.914 27 H 0.155 0.845 28 H 0.050 0.950 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.164 0.836 33 H 0.164 0.836 34 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 2.916 -21.361 -0.156 21.560 hybrid contribution -0.106 0.657 -1.165 1.342 sum 2.810 -20.705 -1.322 20.936 Atomic orbital electron populations 1.69958 1.06074 1.26672 1.50954 1.25033 0.94854 0.99268 0.95380 0.86647 0.79564 0.83102 0.78624 1.20265 1.21320 1.20210 1.21228 0.93038 0.91076 1.50464 0.92693 1.19064 0.94025 0.91360 0.97136 1.21631 0.99201 0.92912 1.00774 1.22140 0.94084 0.90650 1.00057 1.60553 1.20543 1.01264 1.49855 1.21915 0.95177 0.88530 1.01165 1.20133 0.96966 0.85906 1.04757 1.22478 1.02482 0.96093 0.84112 1.21617 1.05748 0.96591 0.99535 1.21832 1.06095 1.00542 0.94876 1.24013 1.01846 0.89544 0.96104 1.84041 1.58723 1.29115 1.35189 0.92979 0.96801 0.96561 0.92486 0.93607 0.95638 0.91402 0.84491 0.95043 0.90778 0.89066 0.88948 0.83571 0.83591 0.78237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.25 5.41 -26.73 -0.14 -2.39 16 11 C 0.06 1.04 5.69 -3.82 -0.02 1.02 16 12 N -0.69 -10.04 6.50 -113.77 -0.74 -10.78 16 13 C 0.06 0.77 5.67 -3.82 -0.02 0.75 16 14 C -0.04 -0.42 6.01 -27.88 -0.17 -0.59 16 15 C 0.00 -0.01 6.57 -35.63 -0.23 -0.24 16 16 C -0.22 -2.28 10.81 -39.70 -0.43 -2.71 16 17 C -0.21 -2.04 10.91 -39.70 -0.43 -2.47 16 18 C -0.05 -0.44 12.09 29.41 0.36 -0.08 16 19 O -0.17 -2.07 10.65 5.70 0.06 -2.01 16 20 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 21 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 22 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 24 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.34 4.42 8.73 -39.30 -0.34 4.07 16 28 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.15 1.32 8.06 -52.49 -0.42 0.89 16 33 H 0.15 1.05 8.06 -52.48 -0.42 0.63 16 34 H 0.20 1.07 8.06 -52.48 -0.42 0.65 16 LS Contribution 294.37 15.07 4.44 4.44 Total: -1.00 -31.59 294.37 -7.55 -39.14 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -5.38 Total: -0.98 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: -1.65 Total: -20.08 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.00 Total: -37.42 kcal Atomic # 8 Polarization: -2.07 SS G_CDS: 0.06 Total: -2.01 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.59 -7.55 -39.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042225238.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.724 kcal (2) G-P(sol) polarization free energy of solvation -31.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds